mRNA_A-nodosum_M_contig861.21.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig861.21.1
Unique NamemRNA_A-nodosum_M_contig861.21.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig861.21.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig861contigA-nodosum_M_contig861:20564..21322 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FGS5
PFAMsPkinase
Model size494
Max annot lvl2759|Eukaryota
KEGG koko:K00870
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005575,GO:0005622,GO:0005623,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0018105,GO:0018193,GO:0018209,GO:0019538,GO:0023052,GO:0035556,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0071704,GO:0140096,GO:1901564
Exons2
Evalue2.91e-11
EggNOG OGsKOG0605@1|root,KOG0605@2759|Eukaryota
EC2.7.1.37
Descriptionprotein serine/threonine kinase activity
Cds size396
COG categoryT
BRITEko00000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870246.7863975-UTR-A-nodosum_M_contig861:20563..206081680870246.7863975-UTR-A-nodosum_M_contig861:20563..20608Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig861 20564..20608 -
1680870246.8273003-UTR-A-nodosum_M_contig861:21269..213221680870246.8273003-UTR-A-nodosum_M_contig861:21269..21322Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig861 21270..21322 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870246.8022418-CDS-A-nodosum_M_contig861:20608..209771680870246.8022418-CDS-A-nodosum_M_contig861:20608..20977Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig861 20609..20977 -
1680870246.8122823-CDS-A-nodosum_M_contig861:21242..212691680870246.8122823-CDS-A-nodosum_M_contig861:21242..21269Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig861 21243..21269 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig861.21.1prot_A-nodosum_M_contig861.21.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig861 20609..21269 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig861.21.1

>prot_A-nodosum_M_contig861.21.1 ID=prot_A-nodosum_M_contig861.21.1|Name=mRNA_A-nodosum_M_contig861.21.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=132bp
MEKVNVQLWRLKLNVGSWVPGEAALAELTTMGSPLSFFVSSEEGSGDDLS
SRHVAACREAKAQPGKLFEEGWPNWLPSSSKFDLKEEIRRTMDFLIGAGV
LALDPGARPPTVESAKKVLMAAADVYKKGNT*
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mRNA from alignment at A-nodosum_M_contig861:20564..21322-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig861.21.1 ID=mRNA_A-nodosum_M_contig861.21.1|Name=mRNA_A-nodosum_M_contig861.21.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=759bp|location=Sequence derived from alignment at A-nodosum_M_contig861:20564..21322- (Ascophyllum nodosum dioecious)
TGCTCCAAGACCTTGAAGAAGTCGAAGAAGATCTCGCGTCAGCCTTGCGC
AAGATGGAGAAAGTTAACGTTCAGCTTTGGGTGAGATGGGCGAGCGATAG
CCGCCACCTAAAGAAAAGTTCACGACAATGAAATATCATGTTAGAAATGC
TCTGTCTTCCGAATGATGACGAAAAAAAATAATATATATAGTCTACAGAT
ATATATTAGTCTAAGACCGATGATACAGTACAGTAGAGCCTGCTTATTAA
TAGAGATTTTGGGACAAGACTGTGTTGTCCCAGGCCGCATGTGTATTGTC
GACATGTCTACTATGAACTCGCTTGCTGCTATCCCCTCCACGCAGAGACT
AAAGCTCAACGTCGGGTCCTGGGTGCCCGGTGAGGCGGCCCTCGCCGAGC
TCACAACGATGGGATCTCCGCTTTCGTTCTTCGTGTCATCAGAAGAGGGA
AGTGGAGACGACCTCAGCTCGAGACACGTGGCAGCGTGCCGGGAGGCCAA
GGCCCAACCCGGCAAGCTCTTTGAGGAGGGGTGGCCCAACTGGCTACCTT
CATCCTCGAAGTTCGACCTGAAGGAGGAGATTCGCCGTACAATGGATTTT
TTGATTGGGGCGGGCGTCCTAGCCCTGGATCCAGGGGCGAGGCCGCCTAC
AGTCGAGTCTGCGAAGAAGGTTCTCATGGCCGCCGCCGACGTATACAAGA
AGGGCAACACATAGTGCCGAGTTGTGTACGTTAGCTCAGGGGAGGTGGGT
GGAGGGACT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig861:20564..21322-

>mRNA_A-nodosum_M_contig861.21.1 ID=mRNA_A-nodosum_M_contig861.21.1|Name=mRNA_A-nodosum_M_contig861.21.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=396bp|location=Sequence derived from alignment at A-nodosum_M_contig861:20564..21322- (Ascophyllum nodosum dioecious)
ATGGAGAAAGTTAACGTTCAGCTTTGGAGACTAAAGCTCAACGTCGGGTC
CTGGGTGCCCGGTGAGGCGGCCCTCGCCGAGCTCACAACGATGGGATCTC
CGCTTTCGTTCTTCGTGTCATCAGAAGAGGGAAGTGGAGACGACCTCAGC
TCGAGACACGTGGCAGCGTGCCGGGAGGCCAAGGCCCAACCCGGCAAGCT
CTTTGAGGAGGGGTGGCCCAACTGGCTACCTTCATCCTCGAAGTTCGACC
TGAAGGAGGAGATTCGCCGTACAATGGATTTTTTGATTGGGGCGGGCGTC
CTAGCCCTGGATCCAGGGGCGAGGCCGCCTACAGTCGAGTCTGCGAAGAA
GGTTCTCATGGCCGCCGCCGACGTATACAAGAAGGGCAACACATAG
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