mRNA_A-nodosum_M_contig856.8.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig856.8.1
Unique NamemRNA_A-nodosum_M_contig856.8.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig856.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig856contigA-nodosum_M_contig856:60007..63308 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size299
Hectar predicted targeting categoryother localisation
Exons3
Cds size267
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870240.9964797-UTR-A-nodosum_M_contig856:60006..600381680870240.9964797-UTR-A-nodosum_M_contig856:60006..60038Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig856 60007..60038 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870241.0085838-CDS-A-nodosum_M_contig856:60038..600851680870241.0085838-CDS-A-nodosum_M_contig856:60038..60085Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig856 60039..60085 +
1680870241.0216033-CDS-A-nodosum_M_contig856:60366..605081680870241.0216033-CDS-A-nodosum_M_contig856:60366..60508Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig856 60367..60508 +
1680870241.0317008-CDS-A-nodosum_M_contig856:63230..633081680870241.0317008-CDS-A-nodosum_M_contig856:63230..63308Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig856 63231..63308 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig856.8.1prot_A-nodosum_M_contig856.8.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig856 60039..63308 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig856.8.1

>prot_A-nodosum_M_contig856.8.1 ID=prot_A-nodosum_M_contig856.8.1|Name=mRNA_A-nodosum_M_contig856.8.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=89bp
MIQALKNNPGSPALKMNKNKRARFGIASPSKDACLGYIDHFAEVYGQLMP
HENATYLYLGSKQELYDDFAEERRLAGEYTISYPYFTKI
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mRNA from alignment at A-nodosum_M_contig856:60007..63308+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig856.8.1 ID=mRNA_A-nodosum_M_contig856.8.1|Name=mRNA_A-nodosum_M_contig856.8.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3302bp|location=Sequence derived from alignment at A-nodosum_M_contig856:60007..63308+ (Ascophyllum nodosum dioecious)
TTTTCCGACGGGCTTTCGACGTCAGCAACAACATGATACAAGCTCTCAAG
AACAACCCCGGTTCTCCTGCGTTGAAAATGTGAGATTATTTTGAAATCAT
CACTCTCTACATATGGCGGTGTTTATGATTTGATCGGCAAATTGATTCGA
TCTGAAAATGTGTACATACATGCATGATATGACCAGCCTCTCTCTCGGTG
TGAACGCCTTCTGTACGCTGCTGCTGCTGCTGCTGCTGCTGCTGGCTTTG
TTGCGTGCATGACGTAGCACGCAACCCTCTTACCTTGAACTTGTACCGAT
CCAAGTGCAGCGCACATACATACTCAGAGATATGTCGCATTGCCGCTTAA
TTTCTTGCAGGAACAAGAACAAGCGGGCTCGATTCGGCATAGCATCTCCT
TCCAAGGATGCGTGTCTAGGTTACATCGATCACTTCGCAGAGGTGTACGG
TCAGCTGATGCCGCACGAGAACGCAACGTATCTCTACCTCGGCAGCAAAC
AGGTGAGGCCCGTCTTTTTTGTTTTTCGAAGAAAGATCAAAACGCGCCTA
TTTTGAAATGAGTATAGTACCTACTCTTCTACAGAATCTTCTAGGGTTAT
GAAAGTACAGAGTTATAATAATTTCACAATACGCTGAATGTGAGAAACTA
CAACAGGGTACCGGCGGTTGGGTCATGGAAAAGTTAAATAATTAGTACAG
GATGTAAATAGTTTTTACTTTGTTCTTGAGCCTGATGACGGCGATGCTTC
GCCCTTCTTCCTCACTCAACGTTTCTGCCACACAAGACACTCTGACAAGC
CTGAGGTCCAGCCTGTGAGTGAGCCTGAGAAACTGCATAGTTGTGTCCTG
TTCTGAGTCAGAGTTGGGCAAGCCTGAAGTAGACTTTAGTGTGGTTGCCA
CTTTAGCTGCGATCGTAATGTGTAACGGGCAAGCTTGAAGTAGATTATAG
TGGTCGTATTACAAGTTAGTTCAGCTGCGTTGTTAGCGAAACTTCGTATC
GTCTTTTGTGCTCTTTTTATGTGTGAAAAAACTAGTAAAATATATAGTGT
AGGACCTTATTACCTGAGACATTCCAGCCGGTTTACCCAGACGCGTGCTC
TACACGCTGAGGGAGGAGCCGTACCAATAAGTAAAAAGGTAATCAGGTGA
CACAGGAATTACGAACTCGTGAGAGAGGTCTCAACACCTAGGTAGACCTC
CCACGATCCCTCGTTTATGTCTTTACATTAAAAACCGTTCTGACCGCTAT
CCAAAGAAACGTATTTCCAGTGTCACAAACAAAAGCTATCAAATCACACG
TATGAATAGTCCACCATACTCGGGACGAATCCCGTACGTAAGCACCAGAT
TCAGCCTGGGTGTGGAGATGAACAGGCTGACGCGGGACAGGACGGCTGAA
CCCGTCTCGCGAGACCAAACTCTCAGGCACGCACAGGGACAGGGGATTAT
GCTTTTCCCTGTTCAGCTGACCACGAGCAGGATTGGCAACCTTACCGGTT
GATCCATACTCTGCCATATGGATGACCATACATACATACATTGTGATAGC
ATTGGAGCTCGTGATATATTTATGGGGGACGGCAGTTCGGAATGAAAGAG
TACCCATGTCGGGCTTCGCTGGACGTGTACACTACTCATGAAATATGTAC
AAGCCATTGATCCCACCTAAACGTTTCGATATTTTTTCACCCATAATAAC
GGGGGATGCTCACAAGTTCTAAGTGTGCTTCGATTTTTCTTTAAAAAGGG
CCTCTCTGTTCCCCTTTCAATCCTTAACCCAAAATACAACACGTAAAAAA
AAGTTGAACATGTACTGAACAATATTGTATGAAGTTTCCTATGGTATAGC
GGGCGTGCTGTTGAATGGTAATGTTTTGTCATTTTTTTTATACCATGCTT
GTTCGTGTACTACATTGCCTCTGTTTGTTTTTACTGGGGGATGCTCAGAA
GGTCTAGGCGCGTTCTGATTTACCTTTAAATACCATGTCATGTAGTGGCT
TTGTATTTATAGCCCATCATGTTATAGTATATTATTGCTACCATGTGTGA
TATTGTGCTACATTGTTTTGGTTTTACTGTATTTTCTTGTATGTTGCATG
GCGGTTAATGTAAGCTTACAGTATTACGGGGGGCTTCTCCCCGACATTAT
TATACTGTTGACCCAAGGTAATTTCCATCGGGGAACCCGTTAATACAACA
TGAAGAGGTTTTGCTTTTGCAGCCTTTGCTCCCACTCACTAAACGTCTTA
AAATCCCCCCCCGCCCCTTGACTGGGGGATGCTCAGAAGGACGTTATAGT
TGTAATAGTGTACGATCATAAGTGTCACCGAATGTAAGAACGTTGTGTTC
TTACACGGTTGGCAACAATGTTACATAACGTTTTACTCCACGCCCATAAG
GACGTTATACTGTGTTAGCTACATGCATTCAGTAATAAGTGTTTGTATTG
TTCTCTATGTGTTAGGTTTGGGCCAGCAGGATGATTAGTAAAGGACATGT
AATGAAAGTGGTAGATACATATGGTTTTGTTTCTCGTATTCAGCGCATTG
GTTGCCAACCCGAACAACTACTTTACTCCGGGCCAATCCCGCTCGTGGTC
TACTGATCAGGGAAAAAAGGAAATAGAAAAAGTCTATCAGTGCCCCCCCC
CCCGCCCGCGCTGCTCGTTCGGAGGAAACAATCAGAAAATCACGCCACGC
ATCTACATGCGCCTAGGCGCAACGCAGGTCTCGTTCCGTCTCGCGCCTGC
ACAAAGATTCCTTCGACTTGTCGACTGGGCCAATTGGTGTCGCTTCGGAA
GATTCTACGCTTCTGTGTGCGATGACAACTTCACCAGTCTATCTGCCTCT
CTCTTCTTCTGGCGATGTCTCGCCGCCCGTCTATCTCTTCTTTCCTTCAC
GCGGCCATGAACCTCCGCCCGCCCTCCGCGACAGTTTCAACTCACACCTC
AGCCTATAACGCCGTCGCTTTCCATCCCGCTATGCCGAACGCCCGGATGT
CGTTCTACTTAGGTGGTGGTGCCGGCTAGTATGTTTTTTCTCTACACATT
TCCACCGAATCCCGTGCTGCCTTATTGGCGGTCGTTGCTTGATCTTGACT
ATCAATCAAGAACAATATCCAGCAGAGTAGACGCGTACTGTACACAATAA
CTCATGCGGCCGAGAGCTGTCGTAGACGCGGTTATCTTACTCTCAACCGC
CGTCCTCGACGTTGCCTTTCTTAGGAACTGTATGATGACTTTGCCGAGGA
AAGGCGTCTGGCAGGCGAATACACGATCAGCTACCCCTACTTCACCAAGA
TT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig856:60007..63308+

>mRNA_A-nodosum_M_contig856.8.1 ID=mRNA_A-nodosum_M_contig856.8.1|Name=mRNA_A-nodosum_M_contig856.8.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=267bp|location=Sequence derived from alignment at A-nodosum_M_contig856:60007..63308+ (Ascophyllum nodosum dioecious)
ATGATACAAGCTCTCAAGAACAACCCCGGTTCTCCTGCGTTGAAAATGAA
CAAGAACAAGCGGGCTCGATTCGGCATAGCATCTCCTTCCAAGGATGCGT
GTCTAGGTTACATCGATCACTTCGCAGAGGTGTACGGTCAGCTGATGCCG
CACGAGAACGCAACGTATCTCTACCTCGGCAGCAAACAGGAACTGTATGA
TGACTTTGCCGAGGAAAGGCGTCTGGCAGGCGAATACACGATCAGCTACC
CCTACTTCACCAAGATT
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