mRNA_A-nodosum_M_contig8555.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig8555.1.1
Unique NamemRNA_A-nodosum_M_contig8555.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig8555.1.1 vs. uniprot
Match: A0A6H5JJG6_9PHAE (SWIM-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJG6_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 1.140e-21
Identity = 55/116 (47.41%), Postives = 70/116 (60.34%), Query Frame = 1 
Query:    4 LVEQGRRPMTDWPATVAPRWAIARNHAATVEEDVIREAPVVPTG------------GQAG---RWQAITDTTTIGSSLIDLKEKGATPQDRRFLYVDSIKRTTAALGVGVETIEPD 306
            L EQGR+P ++WP    P WA+A NH A  E +  ++AP+V TG            G AG   +W A     TI SSL+ LKE G TPQDRRFLYVD +K  TAA+ +GVET+ P+
Sbjct:  696 LAEQGRKPTSEWPEGAKPTWAVALNHKALSEGE--KQAPLVATGRLQCATEGDEGGGGAGAGVQWDA--GNVTIESSLVQLKETGPTPQDRRFLYVDCLKEATAAVSLGVETVPPE 807
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BLAST of mRNA_A-nodosum_M_contig8555.1.1 vs. uniprot
Match: D7FLA8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLA8_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 1.470e-20
Identity = 50/112 (44.64%), Postives = 66/112 (58.93%), Query Frame = 1 
Query:   10 EQGRRPMTDWPATVAPRWAIARNHAATVEEDVIREAPVVPTG-------------GQAGRWQAITDTTTIGSSLIDLKEKGATPQDRRFLYVDSIKRTTAALGVGVETIEPD 306
            ++GRR  T+WP    P+WA+ +NH A  E +  ++AP+V TG             G  G  Q      TI SSL+ LKE G TPQDRRFLYVD +K  TAA+ +GVET+ P+
Sbjct:  253 QRGRRATTEWPEGAKPKWAVTKNHEALSEGE--QQAPLVATGRLQCATDGDKGGGGAGGGVQWDAGNVTIESSLVQLKETGPTPQDRRFLYVDCLKEATAAVSLGVETVPPE 362
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BLAST of mRNA_A-nodosum_M_contig8555.1.1 vs. uniprot
Match: A0A6H5JWW3_9PHAE (MULE domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWW3_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 3.650e-13
Identity = 38/101 (37.62%), Postives = 56/101 (55.45%), Query Frame = 1 
Query:    4 LVEQGRRPMTDWPATVAPRWAIARNHAATVEEDVIREAPVVPTGGQAGRWQAITDTTTIGSSLIDLKEKGATPQDRRFLYVDSIKRTTAALGVGVETIEPD 306
            L EQG R +  WP    P+W +A  H+   ++D +R   VV        WQAI +  TI + L  + + G + QDRR LYV+ +K+ TAA+  GV+ + PD
Sbjct:  419 LTEQGLRELEAWPPECKPQWMVALVHSDASKDDQVRPPTVVV----GDTWQAIPEDATIETRLQRVAQTGQSCQDRRLLYVEMLKKATAAVSSGVQLVPPD 515
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BLAST of mRNA_A-nodosum_M_contig8555.1.1 vs. uniprot
Match: A0A6H5JCK5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK5_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 8.350e-12
Identity = 35/61 (57.38%), Postives = 42/61 (68.85%), Query Frame = 1 
Query:  133 GGQAG---RWQAITDTTTIGSSLIDLKEKGATPQDRRFLYVDSIKRTTAALGVGVETIEPD 306
            GG AG   +W A     TI SSL+ LKE G TPQDRRFLYVD +K  TAA+ +GVET+ P+
Sbjct:    4 GGGAGAGVQWDA--GNVTIESSLVQLKETGPTPQDRRFLYVDCLKEATAAVSLGVETVPPE 62
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BLAST of mRNA_A-nodosum_M_contig8555.1.1 vs. uniprot
Match: A0A6H5JMX3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMX3_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 3.710e-11
Identity = 40/83 (48.19%), Postives = 49/83 (59.04%), Query Frame = 1 
Query:  133 GGQAG---RWQAITDTTTIGSSLIDLKEKGATPQDRRFLYVDSIKRTTAALGVGVETIEPD--HHLLNHLVTSLVAQVGRVAS 366
            GG AG   +W A     TI SSL+ LKE G TPQDRRFLYVD +K  TAA+ +GVET+ P+    L+       V Q  R+ S
Sbjct:  103 GGGAGAGVQWDA--GNVTIESSLVQLKETGPTPQDRRFLYVDCLKEATAAVSLGVETVPPEALRALVRQFKQXGVHQASRIGS 183
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8555.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JJG6_9PHAE1.140e-2147.41SWIM-type domain-containing protein n=2 Tax=Ectoca... [more]
D7FLA8_ECTSI1.470e-2044.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JWW3_9PHAE3.650e-1337.62MULE domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A6H5JCK5_9PHAE8.350e-1257.38Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMX3_9PHAE3.710e-1148.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8555contigA-nodosum_M_contig8555:16041..16430 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LU83
Preferred nameFHY3
PFAMsFAR1,MULE,SWIM
Model size390
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003700,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006355,GO:0007154,GO:0007165,GO:0007602,GO:0007623,GO:0008150,GO:0009314,GO:0009416,GO:0009581,GO:0009582,GO:0009583,GO:0009585,GO:0009605,GO:0009628,GO:0009639,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010017,GO:0010018,GO:0010218,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0019219,GO:0019222,GO:0023052,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0042752,GO:0042753,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0045893,GO:0045935,GO:0048511,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051606,GO:0051716,GO:0060255,GO:0065007,GO:0071214,GO:0071478,GO:0071482,GO:0071489,GO:0071490,GO:0080090,GO:0104004,GO:0140110,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
Exons1
Evalue7.07e-11
EggNOG OGs2CMBY@1|root,2QPXR@2759|Eukaryota
DescriptionMULE transposase domain
Cds size363
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870240.232237-UTR-A-nodosum_M_contig8555:16040..160671680870240.232237-UTR-A-nodosum_M_contig8555:16040..16067Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig8555 16041..16067 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870240.2448652-CDS-A-nodosum_M_contig8555:16067..164301680870240.2448652-CDS-A-nodosum_M_contig8555:16067..16430Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8555 16068..16430 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8555.1.1prot_A-nodosum_M_contig8555.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig8555 16068..16430 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig8555.1.1

>prot_A-nodosum_M_contig8555.1.1 ID=prot_A-nodosum_M_contig8555.1.1|Name=mRNA_A-nodosum_M_contig8555.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=121bp
MTDWPATVAPRWAIARNHAATVEEDVIREAPVVPTGGQAGRWQAITDTTT
IGSSLIDLKEKGATPQDRRFLYVDSIKRTTAALGVGVETIEPDHHLLNHL
VTSLVAQVGRVASVEVRGRG*
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mRNA from alignment at A-nodosum_M_contig8555:16041..16430+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig8555.1.1 ID=mRNA_A-nodosum_M_contig8555.1.1|Name=mRNA_A-nodosum_M_contig8555.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=390bp|location=Sequence derived from alignment at A-nodosum_M_contig8555:16041..16430+ (Ascophyllum nodosum dioecious)
TCGCTGGTAGAGCAGGGGCGGAGGCCCATGACTGACTGGCCGGCAACGGT
TGCGCCAAGGTGGGCGATAGCGAGAAACCACGCTGCTACGGTGGAAGAGG
ATGTCATCAGAGAGGCGCCGGTGGTGCCGACTGGAGGCCAGGCGGGTAGG
TGGCAGGCCATCACTGACACCACAACTATCGGGTCTTCTTTAATTGATTT
GAAGGAGAAGGGGGCTACGCCACAGGACAGACGGTTTTTGTATGTAGACT
CTATAAAGAGAACCACAGCAGCTTTGGGTGTCGGGGTAGAAACAATCGAA
CCAGACCACCACCTGCTGAACCACCTCGTAACGTCCTTGGTGGCACAAGT
TGGACGGGTGGCGAGTGTAGAGGTTCGAGGGCGGGGATAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig8555:16041..16430+

>mRNA_A-nodosum_M_contig8555.1.1 ID=mRNA_A-nodosum_M_contig8555.1.1|Name=mRNA_A-nodosum_M_contig8555.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=363bp|location=Sequence derived from alignment at A-nodosum_M_contig8555:16041..16430+ (Ascophyllum nodosum dioecious)
ATGACTGACTGGCCGGCAACGGTTGCGCCAAGGTGGGCGATAGCGAGAAA
CCACGCTGCTACGGTGGAAGAGGATGTCATCAGAGAGGCGCCGGTGGTGC
CGACTGGAGGCCAGGCGGGTAGGTGGCAGGCCATCACTGACACCACAACT
ATCGGGTCTTCTTTAATTGATTTGAAGGAGAAGGGGGCTACGCCACAGGA
CAGACGGTTTTTGTATGTAGACTCTATAAAGAGAACCACAGCAGCTTTGG
GTGTCGGGGTAGAAACAATCGAACCAGACCACCACCTGCTGAACCACCTC
GTAACGTCCTTGGTGGCACAAGTTGGACGGGTGGCGAGTGTAGAGGTTCG
AGGGCGGGGATAG
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