mRNA_A-nodosum_M_contig8532.3.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig8532.3.1
Unique NamemRNA_A-nodosum_M_contig8532.3.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig8532.3.1 vs. uniprot
Match: PRXV_ASCNO (Vanadium-dependent bromoperoxidase n=1 Tax=Ascophyllum nodosum TaxID=52969 RepID=PRXV_ASCNO)

HSP 1 Score: 228 bits (582), Expect = 4.880e-70
Identity = 108/131 (82.44%), Postives = 117/131 (89.31%), Query Frame = 1
Query:    1 PKLTTFAPNINYLVDFDEWLNIQNGGFPAGPEDEDPQLRFVRNARDLARVSFTDNINTEAYRGSLILLELDAYNRTGVNGPFIGSDRQVGFNNFGTSHYFRLIGAAELAQRASWYQKFQVHNFARPEALGG 393
            PK  TFAP++NY+VDFDEWLNIQNGG PAGPE  D +LRFVRNARDLARV+FTDNINTEAYRG+LILL LDA+NR GVNGPFI  DRQ GF NFG SHYFRLIGAAELAQR+SWYQK+QVH FARPEALGG
Sbjct:  225 PKQETFAPDVNYMVDFDEWLNIQNGGPPAGPELLDDELRFVRNARDLARVTFTDNINTEAYRGALILLGLDAFNRAGVNGPFIDIDRQAGFVNFGISHYFRLIGAAELAQRSSWYQKWQVHRFARPEALGG 355          
BLAST of mRNA_A-nodosum_M_contig8532.3.1 vs. uniprot
Match: O82433_FUCDI (Vanadium bromoperoxidase n=1 Tax=Fucus distichus TaxID=3012 RepID=O82433_FUCDI)

HSP 1 Score: 228 bits (582), Expect = 5.050e-69
Identity = 108/131 (82.44%), Postives = 118/131 (90.08%), Query Frame = 1
Query:    1 PKLTTFAPNINYLVDFDEWLNIQNGGFPAGPEDEDPQLRFVRNARDLARVSFTDNINTEAYRGSLILLELDAYNRTGVNGPFIGSDRQVGFNNFGTSHYFRLIGAAELAQRASWYQKFQVHNFARPEALGG 393
            PK  TFAP++NY+VDFDEWLNIQNGG PAGPE+ D +LRF+RNARDLARVSF DNINTEAYRGSLILLEL A++R G+NGPFI SDRQ GF NFGTSHYFRLIGAAELAQRAS YQK+QVH FARPEALGG
Sbjct:  344 PKQETFAPDLNYMVDFDEWLNIQNGGPPAGPEELDEELRFIRNARDLARVSFVDNINTEAYRGSLILLELGAFSRPGINGPFIDSDRQAGFVNFGTSHYFRLIGAAELAQRASCYQKWQVHRFARPEALGG 474          
BLAST of mRNA_A-nodosum_M_contig8532.3.1 vs. uniprot
Match: A0A3G3BM28_SACJA (Vanadium-dependent iodine peroxidase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A0A3G3BM28_SACJA)

HSP 1 Score: 169 bits (429), Expect = 5.060e-47
Identity = 75/130 (57.69%), Postives = 98/130 (75.38%), Query Frame = 1
Query:    4 KLTTFAPNINYLVDFDEWLNIQNGGFPAGPEDEDPQLRFVRNARDLARVSFTDNINTEAYRGSLILLELDAYNRTGVNGPFIGSDRQVGFNNFGTSHYFRLIGAAELAQRASWYQKFQVHNFARPEALGG 393
            K  TFAP  +Y+ +FDEWL+IQNG FP  PE  DP  R++RN RDL+ ++ TD INTEAYR +LIL+E DA +R G+NGP++   RQ GF N+G SH  RL+G+ EL+ R+SWYQK+ VH +ARPEA+GG
Sbjct:  274 KQNTFAPGEDYMAEFDEWLSIQNGEFPVEPEILDPVPRYIRNGRDLSTMAATDTINTEAYRSALILIEQDAISRFGINGPYVADGRQSGFVNYGISHTMRLVGSGELSMRSSWYQKWNVHLYARPEAIGG 403          
BLAST of mRNA_A-nodosum_M_contig8532.3.1 vs. uniprot
Match: B7ZGM5_9PHAE (Putative vanadium-dependent bromoperoxidase 7 (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=B7ZGM5_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 3.340e-25
Identity = 55/132 (41.67%), Postives = 73/132 (55.30%), Query Frame = 1
Query:    1 PKLTTFAPNINYLVDFDEWLNIQNGGFPAGPEDEDP-QLRFVRNARDLARVSFTDNINTEAYRGSLILLELDAYNRTGVNGPFIGSDRQVGFNNFGTSHYFRLIGAAELAQRASWYQKFQVHNFARPEALGG 393
            P   T  P ++Y+  F  WL++QNG      E  DP +  F+RN RDLA +SF D + TEA+R +LIL         G  GP+  S RQ GF  FG SH    + ++  + R +WY K+QVH   RPEA GG
Sbjct:   43 PTAVTLVPRMDYMTAFQPWLDVQNGDSDVVTEFIDPAEPLFIRNGRDLANLSFNDQLYTEAFRAALILFSESVLG--GSIGPYAESLRQQGFTTFGESHILAAMASSSSSTRHAWYTKWQVHRVLRPEAYGG 172          
BLAST of mRNA_A-nodosum_M_contig8532.3.1 vs. uniprot
Match: B7ZGM1_9PHAE (Putative vanadium-dependent bromoperoxidase 3 n=4 Tax=Laminaria digitata TaxID=80365 RepID=B7ZGM1_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 2.240e-24
Identity = 54/132 (40.91%), Postives = 73/132 (55.30%), Query Frame = 1
Query:    1 PKLTTFAPNINYLVDFDEWLNIQNGGFPAGPEDEDP-QLRFVRNARDLARVSFTDNINTEAYRGSLILLELDAYNRTGVNGPFIGSDRQVGFNNFGTSHYFRLIGAAELAQRASWYQKFQVHNFARPEALGG 393
            P   T  P ++Y+  F  WL++QNG      E  DP +  F+RN RDLA +SF D + TEA+R +LIL         G  GP+  S RQ GF  FG SH    + ++  + R +WY K+QVH   RP+A GG
Sbjct:  260 PTAVTLVPRMDYMTAFQPWLDVQNGDSDVVTEFIDPAEPLFIRNGRDLANLSFNDQLYTEAFRAALILFSESVLG--GSIGPYAESLRQQGFTTFGESHILAAMASSSSSTRHAWYTKWQVHRVLRPQAYGG 389          
BLAST of mRNA_A-nodosum_M_contig8532.3.1 vs. uniprot
Match: A0ZCI9_NODSP (Uncharacterized protein n=2 Tax=Nodularia spumigena TaxID=70799 RepID=A0ZCI9_NODSP)

HSP 1 Score: 100 bits (248), Expect = 5.140e-22
Identity = 53/128 (41.41%), Postives = 71/128 (55.47%), Query Frame = 1
Query:   13 TFAPNINYLVDFDEWLNIQNGGFPAGPEDEDPQLRFVRNARDLARVSFTDNINTEAYRGSLILLELDAYNRTGVNGPFIGSDRQVGFNNFGTSHYFRLIG-AAELAQRASWYQKFQVHNFARPEALGG 393
            T  P+INYL D+DEWLN+QNGG  AG +  DP  R++RN RD+ +    D +  EAY  + ++L  D         P+  S  Q+GF   G  H   L+   A  A +A W+QK+ VH   RPEA GG
Sbjct:  231 TVQPDINYLTDYDEWLNVQNGGL-AGADKFDPTPRYIRNIRDIGQYVHVDALY-EAYLNACLILLDDIKAPLDEGNPYNNSKTQIGFGTLGGPHILSLVTEVATRALKAVWFQKWYVHRRIRPEAFGG 356          
BLAST of mRNA_A-nodosum_M_contig8532.3.1 vs. uniprot
Match: UPI00187FF134 (vanadium-dependent haloperoxidase n=1 Tax=unclassified Nodularia TaxID=2656917 RepID=UPI00187FF134)

HSP 1 Score: 99.4 bits (246), Expect = 1.010e-21
Identity = 53/129 (41.09%), Postives = 71/129 (55.04%), Query Frame = 1
Query:   13 TFAPNINYLVDFDEWLNIQNGGF-PAGPEDEDPQLRFVRNARDLARVSFTDNINTEAYRGSLILLELDAYNRTGVNGPFIGSDRQVGFNNFGTSHYFRLIG-AAELAQRASWYQKFQVHNFARPEALGG 393
            T  P+INYL D+D+WLN+QNG   P G +  DP  R++RN RD+ +    D +        LILL++ A    G   P+  S  Q+GF  FG  H   L+   A  A +A W+QK+ VH   RPEA GG
Sbjct:  234 TVLPDINYLTDYDDWLNVQNGDSDPIGKDKFDPTPRYIRNIRDIGQYVHVDALYEAYLNACLILLDIKAPVDEG--NPYKKSQNQMGFGTFGDPHILSLVTEVATRALKAVWFQKWSVHRRLRPEAFGG 360          
BLAST of mRNA_A-nodosum_M_contig8532.3.1 vs. uniprot
Match: UPI0019EFA36E (Vanadium-dependent haloperoxidase n=1 Tax=Nostocales cyanobacterium LEGE 11386 TaxID=1828825 RepID=UPI0019EFA36E)

HSP 1 Score: 98.6 bits (244), Expect = 1.930e-21
Identity = 52/128 (40.62%), Postives = 70/128 (54.69%), Query Frame = 1
Query:   13 TFAPNINYLVDFDEWLNIQNGGFPAGPEDEDPQLRFVRNARDLARVSFTDNINTEAYRGSLILLELDAYNRTGVNGPFIGSDRQVGFNNFGTSHYFRLIG-AAELAQRASWYQKFQVHNFARPEALGG 393
            T   N++Y+ ++DEWLN+QNGG   G +  DPQ R++RN RD+ +    D +        LILL L A    G   P+  S  Q+GF  FG  H   L+   A  A +A W+QK+ VH   RPEA GG
Sbjct:  249 TVVANVDYMTEYDEWLNVQNGG-SVGQDKFDPQRRYIRNIRDIGQYVHVDALYEAYLNACLILLGLGAPVDEG--NPYKNSKNQIGFGTFGGPHVLSLVTEVATRALKAVWFQKWSVHRRLRPEAFGG 373          
BLAST of mRNA_A-nodosum_M_contig8532.3.1 vs. uniprot
Match: UPI0013E8E755 (NTTRR-F1 domain n=1 Tax=Longirhabdus pacifica TaxID=2305227 RepID=UPI0013E8E755)

HSP 1 Score: 98.6 bits (244), Expect = 2.130e-21
Identity = 52/131 (39.69%), Postives = 69/131 (52.67%), Query Frame = 1
Query:    4 KLTTFAPNINYLVDFDEWLNIQNGGFPAGPEDEDPQLRFVRNARDLARVSFTDNINTEAYRGSLILLELDAYNRTGVNGPFIGSDRQVGFNNFGTSHYFRLIG-AAELAQRASWYQKFQVHNFARPEALGG 393
            +  T  P  N+L D+ EWLN+QNG  P+ PE  DP  R++RN RDLA     D    E     L+LL   + N      P+I S  Q GF  FG +HY      A+ +    +W+QK++VH   RPEA GG
Sbjct:  375 RYRTTLPGTNFLTDYKEWLNVQNGEPPSFPEQFDPTPRYIRNGRDLANYVHIDYPFQEYVNACLLLLSYGS-NALDPADPYIDSKTQYGFVTFGAAHYLDFAARASRVGLIQAWFQKWRVHRRLRPEAFGG 504          
BLAST of mRNA_A-nodosum_M_contig8532.3.1 vs. uniprot
Match: UPI00158C58FC (hypothetical protein n=1 Tax=Bacillus sp. Marseille-Q1617 TaxID=2736887 RepID=UPI00158C58FC)

HSP 1 Score: 92.8 bits (229), Expect = 3.370e-21
Identity = 49/122 (40.16%), Postives = 65/122 (53.28%), Query Frame = 1
Query:   37 LVDFDEWLNIQNGGFPAGPEDEDPQLRFVRNARDLARVSFTDNINTEAYRGSLILLELDAYNRTGV--NGPFIGSDRQVGFNNFGTSHYFRLIG-AAELAQRASWYQKFQVHNFARPEALGG 393
            + D+DEWL +QNG  P GP D DP  R++RNARD+A     D          LI+L   +Y    +  N P++ SD Q+GF+ FG  H    +  AA      +WYQK+ VH   RPE  GG
Sbjct:    1 MTDYDEWLAVQNGAIPPGP-DYDPTPRYIRNARDMAEFVHNDLSIESGLDACLIML---SYGPAALDKNNPYLNSDTQIGFSTFGIPHILDFVTRAARSGLEGAWYQKWLVHRRLRPEEFGG 118          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8532.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
PRXV_ASCNO4.880e-7082.44Vanadium-dependent bromoperoxidase n=1 Tax=Ascophy... [more]
O82433_FUCDI5.050e-6982.44Vanadium bromoperoxidase n=1 Tax=Fucus distichus T... [more]
A0A3G3BM28_SACJA5.060e-4757.69Vanadium-dependent iodine peroxidase n=1 Tax=Sacch... [more]
B7ZGM5_9PHAE3.340e-2541.67Putative vanadium-dependent bromoperoxidase 7 (Fra... [more]
B7ZGM1_9PHAE2.240e-2440.91Putative vanadium-dependent bromoperoxidase 3 n=4 ... [more]
A0ZCI9_NODSP5.140e-2241.41Uncharacterized protein n=2 Tax=Nodularia spumigen... [more]
UPI00187FF1341.010e-2141.09vanadium-dependent haloperoxidase n=1 Tax=unclassi... [more]
UPI0019EFA36E1.930e-2140.63Vanadium-dependent haloperoxidase n=1 Tax=Nostocal... [more]
UPI0013E8E7552.130e-2139.69NTTRR-F1 domain n=1 Tax=Longirhabdus pacifica TaxI... [more]
UPI00158C58FC3.370e-2140.16hypothetical protein n=1 Tax=Bacillus sp. Marseill... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8532contigA-nodosum_M_contig8532:7903..9112 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LTP5
Model size397
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.61e-26
EggNOG OGs2EKT6@1|root,2SQKZ@2759|Eukaryota
Cds size393
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870232.9784658-CDS-A-nodosum_M_contig8532:7904..81241680870232.9784658-CDS-A-nodosum_M_contig8532:7904..8124Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8532 7905..8124 -
1680870233.0510736-CDS-A-nodosum_M_contig8532:8311..84151680870233.0510736-CDS-A-nodosum_M_contig8532:8311..8415Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8532 8312..8415 -
1680870233.062171-CDS-A-nodosum_M_contig8532:9043..91121680870233.062171-CDS-A-nodosum_M_contig8532:9043..9112Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8532 9044..9112 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8532.3.1prot_A-nodosum_M_contig8532.3.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig8532 7905..9112 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig8532.3.1

>prot_A-nodosum_M_contig8532.3.1 ID=prot_A-nodosum_M_contig8532.3.1|Name=mRNA_A-nodosum_M_contig8532.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=131bp
PKLTTFAPNINYLVDFDEWLNIQNGGFPAGPEDEDPQLRFVRNARDLARV
SFTDNINTEAYRGSLILLELDAYNRTGVNGPFIGSDRQVGFNNFGTSHYF
RLIGAAELAQRASWYQKFQVHNFARPEALGG
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mRNA from alignment at A-nodosum_M_contig8532:7903..9112-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig8532.3.1 ID=mRNA_A-nodosum_M_contig8532.3.1|Name=mRNA_A-nodosum_M_contig8532.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1210bp|location=Sequence derived from alignment at A-nodosum_M_contig8532:7903..9112- (Ascophyllum nodosum dioecious)
CCGAAGCTGACGACATTCGCCCCCAACATAAACTACTTGGTCGATTTTGA CGAATGGCTGAACATTCAGGTAGGTCCAGTCCAACCGTCTCGTCTTTGAA CGAGCCCTTGATGAGACGCGACTTATTTAAAAGTTTTTTTCTTCGAAAAG AAGCTCCCATTTTTTTTCTTTTTTTTTTTATCTCACTTATAGCCGATGGA CCTCATCATTACCATTCTGCCTGTGGTAACAAAGGATCTTCCCGTCTCTC CCCGGTTCACGCCTTACGATTTTTGATCGCGATGCAAGTTCAGCACTCTA ACAACTTGTCAACCAATGGTTGGATTTTACTTACTCACGTTCCCACGCTT TCCGTTACGAAAGAAAGAACACAAATCCTACTTTGGTAAGAATCGAACTC ACGACTTCCGCACTAGCAGGTATGCAGGTTACCTACTAGACCACTCGGGC GACGAGGGCTGCGACCACTACGCCCTGCAAACCGCGTTTTTGGGGTCCCG AACGGCATTCAAGTCTTTTGACCTACATAGCATTTCCGCTTGTGGTCATT GCAGAGTTTACAGTACACGACAACAATAATAACACATATGCGAATTAATG TCGTTTGCCTGTCACTAGCTGACCTTCAAGCAGTATCACCTATATTTGTG GTGAACGGTCCTTCCTTGCACTTTGTTGTTGTTGTCTTGTTGTGCAGAAT GGTGGATTCCCGGCCGGCCCCGAAGATGAAGACCCCCAGCTGCGTTTCGT CCGTAACGCCCGCGACCTGGCCAGGGTCTCCTTCACAGACAATATCAACA CGTGAGTGATTCTAACCAATTATAGTTGAGTACCTTGAACTTTCCTTTAG CTCTCTAAACAGCCCTTAACGACACCATCCATGGATGCCTTCTTGCTCAT TTCCTCGTCTCCGGCGGTCATAACCTTGTTCTCATTCCCTGTTATAAACC TTAACAGCCGTATTTTACATGTTTTTAAAAACCGCCAGCGAAGCTTATCG CGGGTCTCTTATCCTACTCGAGCTGGACGCCTACAACAGGACCGGTGTCA ACGGCCCATTCATCGGCAGTGATCGCCAGGTGGGCTTCAACAACTTCGGC ACGTCTCACTACTTCAGATTGATAGGTGCCGCCGAGTTGGCGCAGCGTGC CTCGTGGTACCAAAAGTTCCAGGTGCATAATTTCGCACGCCCCGAGGCCC TCGGAGGTAC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig8532:7903..9112-

>mRNA_A-nodosum_M_contig8532.3.1 ID=mRNA_A-nodosum_M_contig8532.3.1|Name=mRNA_A-nodosum_M_contig8532.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=393bp|location=Sequence derived from alignment at A-nodosum_M_contig8532:7903..9112- (Ascophyllum nodosum dioecious)
CCGAAGCTGACGACATTCGCCCCCAACATAAACTACTTGGTCGATTTTGA
CGAATGGCTGAACATTCAGAATGGTGGATTCCCGGCCGGCCCCGAAGATG
AAGACCCCCAGCTGCGTTTCGTCCGTAACGCCCGCGACCTGGCCAGGGTC
TCCTTCACAGACAATATCAACACCGAAGCTTATCGCGGGTCTCTTATCCT
ACTCGAGCTGGACGCCTACAACAGGACCGGTGTCAACGGCCCATTCATCG
GCAGTGATCGCCAGGTGGGCTTCAACAACTTCGGCACGTCTCACTACTTC
AGATTGATAGGTGCCGCCGAGTTGGCGCAGCGTGCCTCGTGGTACCAAAA
GTTCCAGGTGCATAATTTCGCACGCCCCGAGGCCCTCGGAGGT
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