mRNA_A-nodosum_M_contig852.8.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig852.8.1
Unique NamemRNA_A-nodosum_M_contig852.8.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig852.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig852contigA-nodosum_M_contig852:42811..44319 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size184
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size177
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870229.9246535-UTR-A-nodosum_M_contig852:42810..428161680870229.9246535-UTR-A-nodosum_M_contig852:42810..42816Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig852 42811..42816 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870229.9380786-CDS-A-nodosum_M_contig852:42816..429151680870229.9380786-CDS-A-nodosum_M_contig852:42816..42915Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig852 42817..42915 +
1680870229.9572582-CDS-A-nodosum_M_contig852:44241..443191680870229.9572582-CDS-A-nodosum_M_contig852:44241..44319Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig852 44242..44319 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig852.8.1prot_A-nodosum_M_contig852.8.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig852 42817..44319 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig852.8.1

>prot_A-nodosum_M_contig852.8.1 ID=prot_A-nodosum_M_contig852.8.1|Name=mRNA_A-nodosum_M_contig852.8.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=59bp
MLVLRMMQSPVAREMGTRARRRKRKRKTRRKKKSSGEHRGNGAQENNALC
ALESISTGR
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mRNA from alignment at A-nodosum_M_contig852:42811..44319+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig852.8.1 ID=mRNA_A-nodosum_M_contig852.8.1|Name=mRNA_A-nodosum_M_contig852.8.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1509bp|location=Sequence derived from alignment at A-nodosum_M_contig852:42811..44319+ (Ascophyllum nodosum dioecious)
GTGCTGATGCTTGTTCTACGGATGATGCAATCACCGGTTGCTCGAGAGAT
GGGCACGCGTGCTCGGCGCCGGAAAAGAAAAAGAAAGACGAGAAGAAAGA
AGAAGGTACAAATGTCCCCGCCAGGGTTTCCGTAATCTGTATCATCAGCA
TCTAATCGTGCGCGGAGCAGCAGCAGTAGCAAGCCATAGGTGCGGTGTAC
AGAACTGAGTAGTTTGTGTAGTCCCTGTACCGAACAGAAGTTGGGCGGAA
CTGATTTTGATACGTAACGCATGTTGAAATACGTCTACGAAACAAACTGT
TTTTAAGAAGTACTGGTAAGTTACAGTAGTGACAGCAGTAGTCTTGACGG
TAGCTTTCTCTCTGCCTGTGTTAGGGAAAAAGCGGTATTTTTCATTCTTT
CTTTTTTCGCACATCCCTGGTCGATCGTTCGGTGCGCCTGGGTGTACAGT
TTTACCAGGGCAGGGTAAAGGAGTTCCACAATAAAAGGTGGATATAGGAG
GGCGGGGGTGGATTACGATATGTCACCGAAATAACGGGGGGCGATAACAA
GGCATTCCCTGTTAATACGCCTTCGTCAGAGGGAAGGATAGCTAATCATT
AATAGCGAAGCATGTAGGGAAGACACGTGGAACGTCAATAGACGTCCGGA
GACAATTATTACCGTTTACATCATACAATATAGTATGACCCCAAAGAAGA
ATGTAACCCGTACCAACTCCCGGGTAGGATCATGAATAGATATTTCCCCC
TGGCGCAGTATGATCTATATACTCCAATATCCCCTATCACGATTATAACC
TTGTAAGGGTTAATACCTACTCCCTTCTACTTGACTGGGAGTTTTCGTCC
CGAACGTACGTGCTTTTGTGAACACCATGGGGTTTATGGAATCTGTATTT
GGAAGGGTTTGATTTAACCGCTCCAACCCTCCATCTCGCGGTTCTTTCAT
GTCACAAAACATTGTTCCGGTACTGTACTGCACCAAGTACTGTGCTTTAA
TCGCTCGTGTGTAGCAATTTTTCATCTCGCAATTTTCTAGTGCGGGTTTT
GTGGGTTCGAATCTCGGCAGGATGATCTTCTTTTATTCTGTTTTCCGGTG
CAAAAAGCGTGAGGGGGCATTGGGTAAGCAAAGTTCAACCTATTTATGGT
TGACTAGGCGTGAAGAGTGTGAATCGCTAGCAGCATGAACCGGGGAGAGA
CAGGTAGATTCCTTGTTAAGAGTATCAACACGTGTGTTTGTTGATTGGGC
CCATCTGCAGAGAGTTGAGAATCACACAGAAAAACAACCAAAACACAAAA
TCAAATAGAAGATAAAACACTTTAAAATGCTTGGCCGGCAAGAGTTTTGC
TCTATTTATTGTTGCCGCCGTCGCCACCGTCACCACCTTCGCTATCCCCA
CCGCTGCTGCCGCTGCTTCTCCTCAAAGAAGTCCTCCGGCGAGCATCGTG
GAAATGGGGCACAGGAGAACAATGCGTTGTGTGCTTTGGAGAGTATTTCT
ACGGGGAGG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig852:42811..44319+

>mRNA_A-nodosum_M_contig852.8.1 ID=mRNA_A-nodosum_M_contig852.8.1|Name=mRNA_A-nodosum_M_contig852.8.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=177bp|location=Sequence derived from alignment at A-nodosum_M_contig852:42811..44319+ (Ascophyllum nodosum dioecious)
ATGCTTGTTCTACGGATGATGCAATCACCGGTTGCTCGAGAGATGGGCAC
GCGTGCTCGGCGCCGGAAAAGAAAAAGAAAGACGAGAAGAAAGAAGAAGT
CCTCCGGCGAGCATCGTGGAAATGGGGCACAGGAGAACAATGCGTTGTGT
GCTTTGGAGAGTATTTCTACGGGGAGG
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