mRNA_A-nodosum_M_contig852.13.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig852.13.1
Unique NamemRNA_A-nodosum_M_contig852.13.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig852.13.1 vs. uniprot
Match: A0A3M7P2T5_BRAPC (ATP-dependent DNA helicase pif1 (Fragment) n=1 Tax=Brachionus plicatilis TaxID=10195 RepID=A0A3M7P2T5_BRAPC)

HSP 1 Score: 128 bits (321), Expect = 5.300e-34
Identity = 52/91 (57.14%), Postives = 64/91 (70.33%), Query Frame = 1 
Query:    1 FITLSAADNHWEDLHRLMPPSYPDTARGRRLAVIDNPHIVDWYFGHRVNSLINSFFDGVLGSEWRWFRFEYQGRGSIHLHGTVKLKNDPGL 273
            F T S ADNHWEDLHRL+P  +    + R L V++NPH+VDWYFG R+N  +   FDG+L  EWRW R+E+Q R SIH HG  + KNDPGL
Sbjct:  119 FFTFSYADNHWEDLHRLLPGGFSTDPKKRYLNVLNNPHLVDWYFGIRLNEFLKIVFDGILDCEWRWHRYEWQSRSSIHAHGAARFKNDPGL 209
[Close]
BLAST of mRNA_A-nodosum_M_contig852.13.1 vs. uniprot
Match: A0A3M7P3U3_BRAPC (ATP-dependent DNA helicase pif1 (Fragment) n=1 Tax=Brachionus plicatilis TaxID=10195 RepID=A0A3M7P3U3_BRAPC)

HSP 1 Score: 122 bits (305), Expect = 1.150e-33
Identity = 48/91 (52.75%), Postives = 62/91 (68.13%), Query Frame = 1 
Query:    1 FITLSAADNHWEDLHRLMPPSYPDTARGRRLAVIDNPHIVDWYFGHRVNSLINSFFDGVLGSEWRWFRFEYQGRGSIHLHGTVKLKNDPGL 273
            F T S  DNHW+DLH LMP   P     +R  VI+NPH+VDW+FGH++N  +++ FD +L  EWRW RFE+Q R +IH HG  + KNDP L
Sbjct:   35 FFTFSYPDNHWDDLHALMPGPNPKNDADKRKNVINNPHLVDWFFGHKLNEFLHTVFDNILECEWRWHRFEWQSRSTIHAHGAARFKNDPNL 125
[Close]
BLAST of mRNA_A-nodosum_M_contig852.13.1 vs. uniprot
Match: A0A3M7T2K9_BRAPC (ATP-dependent DNA helicase pif1 n=1 Tax=Brachionus plicatilis TaxID=10195 RepID=A0A3M7T2K9_BRAPC)

HSP 1 Score: 120 bits (302), Expect = 1.340e-32
Identity = 50/91 (54.95%), Postives = 60/91 (65.93%), Query Frame = 1 
Query:    1 FITLSAADNHWEDLHRLMPPSYPDTARGRRLAVIDNPHIVDWYFGHRVNSLINSFFDGVLGSEWRWFRFEYQGRGSIHLHGTVKLKNDPGL 273
            F T S ADNHW DLHRLMP  +      R   V++NPH+VDWYF  R+N  +   FDG+L  EWRW R+E+Q R +IH HG  K KNDPGL
Sbjct:   36 FFTFSYADNHWHDLHRLMPGQFTLDKNKRYQNVLNNPHLVDWYFTFRLNEFLKVVFDGILDCEWRWHRYEWQSRSTIHAHGAAKFKNDPGL 126
[Close]
BLAST of mRNA_A-nodosum_M_contig852.13.1 vs. uniprot
Match: A0A813XGG1_9BILA (Hypothetical protein n=1 Tax=Brachionus calyciflorus TaxID=104777 RepID=A0A813XGG1_9BILA)

HSP 1 Score: 121 bits (304), Expect = 5.120e-32
Identity = 50/91 (54.95%), Postives = 61/91 (67.03%), Query Frame = 1 
Query:    1 FITLSAADNHWEDLHRLMPPSYPDTARGRRLAVIDNPHIVDWYFGHRVNSLINSFFDGVLGSEWRWFRFEYQGRGSIHLHGTVKLKNDPGL 273
            F T S ADNHWEDLH L+P  + D  + R   V+ NPH+VDWYF  R+N  +   FDG+L  EWRW R+E+Q R SIH HG  + KNDPGL
Sbjct:   88 FFTFSFADNHWEDLHNLLPGGFSDDPKLRYENVLRNPHLVDWYFSVRLNEFLRVVFDGILQCEWRWHRYEWQARSSIHAHGAARFKNDPGL 178
[Close]
BLAST of mRNA_A-nodosum_M_contig852.13.1 vs. uniprot
Match: A0A3M7P8N5_BRAPC (ATP-dependent DNA helicase (Fragment) n=1 Tax=Brachionus plicatilis TaxID=10195 RepID=A0A3M7P8N5_BRAPC)

HSP 1 Score: 123 bits (309), Expect = 7.980e-31
Identity = 51/91 (56.04%), Postives = 62/91 (68.13%), Query Frame = 1 
Query:    1 FITLSAADNHWEDLHRLMPPSYPDTARGRRLAVIDNPHIVDWYFGHRVNSLINSFFDGVLGSEWRWFRFEYQGRGSIHLHGTVKLKNDPGL 273
            F T S ADNHWEDLHRL P  + +  + R   V++NPHIVDWYFG R+N  +   FD +L  EWRW R+E+Q R SIH HG  + KNDPGL
Sbjct:    9 FFTFSYADNHWEDLHRLFPGGFSNDPKVRYKNVLNNPHIVDWYFGIRLNEFLKIVFDSILQCEWRWHRYEWQSRSSIHAHGAARFKNDPGL 99
[Close]
BLAST of mRNA_A-nodosum_M_contig852.13.1 vs. uniprot
Match: A0A3M7RLM2_BRAPC (ATP-dependent DNA helicase PIF1 n=1 Tax=Brachionus plicatilis TaxID=10195 RepID=A0A3M7RLM2_BRAPC)

HSP 1 Score: 121 bits (304), Expect = 8.070e-31
Identity = 51/91 (56.04%), Postives = 60/91 (65.93%), Query Frame = 1 
Query:    1 FITLSAADNHWEDLHRLMPPSYPDTARGRRLAVIDNPHIVDWYFGHRVNSLINSFFDGVLGSEWRWFRFEYQGRGSIHLHGTVKLKNDPGL 273
            F T S ADNHW DLHRL+P  Y D  + R   V+ NPH+VDWYF  R+N  +   FDG L  EWRW R+E+Q R SIH HG  + KNDPGL
Sbjct:  178 FFTFSYADNHWIDLHRLLPGGYSDDPKVRYKNVLRNPHLVDWYFSVRLNEFLQIVFDGTLQCEWRWHRYEWQARSSIHAHGAARFKNDPGL 268
[Close]
BLAST of mRNA_A-nodosum_M_contig852.13.1 vs. uniprot
Match: A0A3M7P4G0_BRAPC (ATP-dependent DNA helicase pif1 (Fragment) n=1 Tax=Brachionus plicatilis TaxID=10195 RepID=A0A3M7P4G0_BRAPC)

HSP 1 Score: 118 bits (295), Expect = 8.860e-31
Identity = 48/91 (52.75%), Postives = 60/91 (65.93%), Query Frame = 1 
Query:    1 FITLSAADNHWEDLHRLMPPSYPDTARGRRLAVIDNPHIVDWYFGHRVNSLINSFFDGVLGSEWRWFRFEYQGRGSIHLHGTVKLKNDPGL 273
            F T S ADN+WEDLHRL+P  +    + R   V++NPH+VDWYFG R+N  +   F G+L  EWRW R+E+Q R SIH H     KNDPGL
Sbjct:   48 FFTFSYADNYWEDLHRLLPGGFSTDPKKRYFNVLNNPHLVDWYFGIRLNEFLKIVFGGILDCEWRWHRYEWQSRSSIHAHSAAHFKNDPGL 138
[Close]
BLAST of mRNA_A-nodosum_M_contig852.13.1 vs. uniprot
Match: A0A813YMV4_9BILA (ATP-dependent DNA helicase n=1 Tax=Brachionus calyciflorus TaxID=104777 RepID=A0A813YMV4_9BILA)

HSP 1 Score: 122 bits (305), Expect = 2.780e-30
Identity = 50/91 (54.95%), Postives = 62/91 (68.13%), Query Frame = 1 
Query:    1 FITLSAADNHWEDLHRLMPPSYPDTARGRRLAVIDNPHIVDWYFGHRVNSLINSFFDGVLGSEWRWFRFEYQGRGSIHLHGTVKLKNDPGL 273
            F T S ADN+WEDLHRL+P  + D  + R   V+ NPH+VDWYF  R+N  +   FDG+L  EWRW R+E+Q R SIH HG  + KNDPGL
Sbjct:  349 FFTFSYADNYWEDLHRLLPGGFSDNPKVRYENVLRNPHLVDWYFSVRLNEFLRVVFDGILQCEWRWHRYEWQARSSIHAHGAARFKNDPGL 439
[Close]
BLAST of mRNA_A-nodosum_M_contig852.13.1 vs. uniprot
Match: UPI0010692B95 (uncharacterized protein LOC114526576 n=2 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI0010692B95)

HSP 1 Score: 116 bits (291), Expect = 4.400e-29
Identity = 50/91 (54.95%), Postives = 61/91 (67.03%), Query Frame = 1 
Query:    1 FITLSAADNHWEDLHRLMPPSYPDTARGRRLAVIDNPHIVDWYFGHRVNSLINSFFDGVLGSEWRWFRFEYQGRGSIHLHGTVKLKNDPGL 273
            F T SAAD+HW DL RL+  +   +   R  AVIDNPH+ DW+F  R+   I  +  GVLG+EW W+RFEYQ RGSIH HG  KLKNDP +
Sbjct:  283 FFTFSAADSHWPDLQRLLQSNEGASRTERAQAVIDNPHMTDWFFMQRLQEFIKHWLQGVLGAEWFWYRFEYQARGSIHAHGCAKLKNDPDI 373
[Close]
BLAST of mRNA_A-nodosum_M_contig852.13.1 vs. uniprot
Match: A0A7D9ECY5_PARCT (ATP-dependent DNA helicase PIF1 (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9ECY5_PARCT)

HSP 1 Score: 118 bits (296), Expect = 4.530e-29
Identity = 53/93 (56.99%), Postives = 64/93 (68.82%), Query Frame = 1 
Query:    1 FITLSAADNHWEDLHRLMPPSYPDTARG--RRLAVIDNPHIVDWYFGHRVNSLINSFFDGVLGSEWRWFRFEYQGRGSIHLHGTVKLKNDPGL 273
            F T S+AD HW +LH L   +  +TA    RR  VI+NPHIVDW+F  R+ S I  +    LG++W WFR+EYQGRGSIH HGT KLKNDPGL
Sbjct:  727 FFTFSSADMHWPELHALFGENTDNTASAQIRRQNVINNPHIVDWFFTQRLESFIKHWLYDTLGAQWHWFRYEYQGRGSIHCHGTAKLKNDPGL 819
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig852.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3M7P2T5_BRAPC5.300e-3457.14ATP-dependent DNA helicase pif1 (Fragment) n=1 Tax... [more]
A0A3M7P3U3_BRAPC1.150e-3352.75ATP-dependent DNA helicase pif1 (Fragment) n=1 Tax... [more]
A0A3M7T2K9_BRAPC1.340e-3254.95ATP-dependent DNA helicase pif1 n=1 Tax=Brachionus... [more]
A0A813XGG1_9BILA5.120e-3254.95Hypothetical protein n=1 Tax=Brachionus calyciflor... [more]
A0A3M7P8N5_BRAPC7.980e-3156.04ATP-dependent DNA helicase (Fragment) n=1 Tax=Brac... [more]
A0A3M7RLM2_BRAPC8.070e-3156.04ATP-dependent DNA helicase PIF1 n=1 Tax=Brachionus... [more]
A0A3M7P4G0_BRAPC8.860e-3152.75ATP-dependent DNA helicase pif1 (Fragment) n=1 Tax... [more]
A0A813YMV4_9BILA2.780e-3054.95ATP-dependent DNA helicase n=1 Tax=Brachionus caly... [more]
UPI0010692B954.400e-2954.95uncharacterized protein LOC114526576 n=2 Tax=Dendr... [more]
A0A7D9ECY5_PARCT4.530e-2956.99ATP-dependent DNA helicase PIF1 (Fragment) n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig852contigA-nodosum_M_contig852:124087..124359 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog400682.PAC_15725762
PFAMsHelitron_like_N
Model size273
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.66e-19
EggNOG OGs2CC8B@1|root,2S3BW@2759|Eukaryota,3A3QP@33154|Opisthokonta,3C1YH@33208|Metazoa
Cds size273
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870230.4294026-CDS-A-nodosum_M_contig852:124086..1243591680870230.4294026-CDS-A-nodosum_M_contig852:124086..124359Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig852 124087..124359 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig852.13.1prot_A-nodosum_M_contig852.13.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig852 124087..124359 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig852.13.1

>prot_A-nodosum_M_contig852.13.1 ID=prot_A-nodosum_M_contig852.13.1|Name=mRNA_A-nodosum_M_contig852.13.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=91bp
FITLSAADNHWEDLHRLMPPSYPDTARGRRLAVIDNPHIVDWYFGHRVNS
LINSFFDGVLGSEWRWFRFEYQGRGSIHLHGTVKLKNDPGL
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mRNA from alignment at A-nodosum_M_contig852:124087..124359+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig852.13.1 ID=mRNA_A-nodosum_M_contig852.13.1|Name=mRNA_A-nodosum_M_contig852.13.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=273bp|location=Sequence derived from alignment at A-nodosum_M_contig852:124087..124359+ (Ascophyllum nodosum dioecious)
TTCATAACTCTTTCTGCCGCCGACAATCACTGGGAGGACCTCCACCGCCT
CATGCCGCCAAGTTACCCAGATACAGCACGTGGTAGACGCCTGGCCGTCA
TCGACAACCCCCACATAGTGGACTGGTATTTCGGGCACCGGGTGAATTCT
CTCATAAATTCTTTCTTCGACGGAGTGCTAGGCTCTGAATGGCGCTGGTT
CAGGTTTGAATATCAGGGCAGGGGAAGTATTCACCTACACGGGACGGTCA
AGCTGAAGAACGACCCGGGCCTT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig852:124087..124359+

>mRNA_A-nodosum_M_contig852.13.1 ID=mRNA_A-nodosum_M_contig852.13.1|Name=mRNA_A-nodosum_M_contig852.13.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=273bp|location=Sequence derived from alignment at A-nodosum_M_contig852:124087..124359+ (Ascophyllum nodosum dioecious)
TTCATAACTCTTTCTGCCGCCGACAATCACTGGGAGGACCTCCACCGCCT
CATGCCGCCAAGTTACCCAGATACAGCACGTGGTAGACGCCTGGCCGTCA
TCGACAACCCCCACATAGTGGACTGGTATTTCGGGCACCGGGTGAATTCT
CTCATAAATTCTTTCTTCGACGGAGTGCTAGGCTCTGAATGGCGCTGGTT
CAGGTTTGAATATCAGGGCAGGGGAAGTATTCACCTACACGGGACGGTCA
AGCTGAAGAACGACCCGGGCCTT
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