mRNA_A-nodosum_M_contig852.12.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig852.12.1
Unique NamemRNA_A-nodosum_M_contig852.12.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig852.12.1 vs. uniprot
Match: UPI00106C8F71 (uncharacterized protein LOC114545138 n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106C8F71)

HSP 1 Score: 170 bits (431), Expect = 8.790e-50
Identity = 78/142 (54.93%), Postives = 108/142 (76.06%), Query Frame = 1 
Query:    1 KSFSSANDMDPGSVPDQLKGLTQAEEMLIAKGCPVMRVYRLKGGQRGYGGHVVNLAQNIGDFVNSLPRPAEELPIIVVRRQGGEGIHKDLLVRRQRVFDALNWLKANNPFYSDISVNTDNLNSLPDNGSLQDLYETSGDDDL 426
            K+FS+ NDMDPG+VP+QL+GLTQ EEMLI++ CP+M+VYR  GGQRGY GHV+NL Q+I  F+N LP    +LP+++VRRQG +  HKD  VRR +VF+A++WLK NNPF+ DI ++ D +  LP+NG  ++L     D++L
Sbjct:   47 KNFSTGNDMDPGTVPEQLRGLTQVEEMLISRVCPIMQVYRKHGGQRGYKGHVLNLPQDIQSFLNRLPAQVADLPVMIVRRQGADETHKDFTVRRHKVFEAISWLKTNNPFFKDIEIDRDIIQRLPENGVPEELRYIIDDNEL 188
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BLAST of mRNA_A-nodosum_M_contig852.12.1 vs. uniprot
Match: A0A6S7G3B5_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7G3B5_PARCT)

HSP 1 Score: 160 bits (405), Expect = 4.440e-46
Identity = 73/125 (58.40%), Postives = 95/125 (76.00%), Query Frame = 1 
Query:    1 KSFSSANDMDPGSVPDQLKGLTQAEEMLIAKGCPVMRVYRLKGGQRGYGGHVVNLAQNIGDFVNSLPRPAEELPIIVVRRQGGEGIHKDLLVRRQRVFDALNWLKANNPFYSDISVNTDNLNSLP 375
            K FS+ NDMDPG+VP+QL+GLTQ EEMLI++ CP+MRVYR  GGQRGY GHV+NL Q+I  F+N LP    +LP+++VRR G E  H+D  VRR +V +A+ WLK NNPF+ DI ++ D + SLP
Sbjct:  174 KKFSAENDMDPGTVPEQLRGLTQVEEMLISRVCPIMRVYRKHGGQRGYKGHVLNLPQDIQSFLNRLPSRVADLPVLIVRRHGAEDTHRDFTVRRHKVLEAVLWLKTNNPFFKDIEIDRDVIQSLP 298
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BLAST of mRNA_A-nodosum_M_contig852.12.1 vs. uniprot
Match: UPI00106CBCF8 (uncharacterized protein LOC114518711 n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106CBCF8)

HSP 1 Score: 168 bits (426), Expect = 5.010e-46
Identity = 79/142 (55.63%), Postives = 106/142 (74.65%), Query Frame = 1 
Query:    1 KSFSSANDMDPGSVPDQLKGLTQAEEMLIAKGCPVMRVYRLKGGQRGYGGHVVNLAQNIGDFVNSLPRPAEELPIIVVRRQGGEGIHKDLLVRRQRVFDALNWLKANNPFYSDISVNTDNLNSLPDNGSLQDLYETSGDDDL 426
            K+FS+ NDMDPG VP+QL+GLTQ EEMLI++ CP+M+VYR  GGQRGY GHV+NL Q+I  F+N LP    +LP+++VRRQG +  HKD  VRR RV +A+ WLK NNPF+ DI ++ D + SLP+NG  ++L     D++L
Sbjct:  333 KNFSAGNDMDPGIVPEQLRGLTQVEEMLISRVCPIMQVYRKHGGQRGYKGHVLNLPQDIQSFLNRLPAQVADLPVMIVRRQGADETHKDFTVRRHRVLEAILWLKTNNPFFKDIEIDRDVIQSLPENGIPKELRYVIDDNEL 474
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BLAST of mRNA_A-nodosum_M_contig852.12.1 vs. uniprot
Match: A0A6S7JXT5_PARCT (Uncharacterized protein n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JXT5_PARCT)

HSP 1 Score: 162 bits (410), Expect = 9.200e-46
Identity = 75/133 (56.39%), Postives = 99/133 (74.44%), Query Frame = 1 
Query:    1 KSFSSANDMDPGSVPDQLKGLTQAEEMLIAKGCPVMRVYRLKGGQRGYGGHVVNLAQNIGDFVNSLPRPAEELPIIVVRRQGGEGIHKDLLVRRQRVFDALNWLKANNPFYSDISVNTDNLNSLPDNGSLQDL 399
            K FS+ NDMDPG VP+QL+GLTQ EEMLI++ CP+MRVYR  GGQRGY GHV+NL Q+I  F+N LP    +LP+++VRR G E  H+D  VRR +V +A+ WLK NNPF+ +I ++ D + SLP+NG   +L
Sbjct:  159 KKFSAENDMDPGIVPEQLRGLTQVEEMLISRVCPIMRVYRKHGGQRGYKGHVLNLPQDIQSFLNRLPSRVADLPVLIVRRHGAEDTHRDFTVRRHKVLEAVLWLKTNNPFFKNIEIDRDVIQSLPENGIPDEL 291
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BLAST of mRNA_A-nodosum_M_contig852.12.1 vs. uniprot
Match: A0A7D9LMQ1_PARCT (Uncharacterized protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9LMQ1_PARCT)

HSP 1 Score: 162 bits (410), Expect = 1.020e-45
Identity = 75/133 (56.39%), Postives = 99/133 (74.44%), Query Frame = 1 
Query:    1 KSFSSANDMDPGSVPDQLKGLTQAEEMLIAKGCPVMRVYRLKGGQRGYGGHVVNLAQNIGDFVNSLPRPAEELPIIVVRRQGGEGIHKDLLVRRQRVFDALNWLKANNPFYSDISVNTDNLNSLPDNGSLQDL 399
            K FS+ NDMDPG VP+QL+GLTQ EEMLI++ CP+MRVYR  GGQRGY GHV+NL Q+I  F+N LP    +LP+++VRR G E  H+D  VRR +V +A+ WLK NNPF+ +I ++ D + SLP+NG   +L
Sbjct:  148 KKFSAENDMDPGIVPEQLRGLTQVEEMLISRVCPIMRVYRKHGGQRGYKGHVLNLPQDIQSFLNRLPSRVADLPVLIVRRHGAEDTHRDFTVRRHKVLEAVLWLKTNNPFFKNIEIDRDVIQSLPENGIPDEL 280
[Close]
BLAST of mRNA_A-nodosum_M_contig852.12.1 vs. uniprot
Match: UPI00106D8CF5 (uncharacterized protein LOC114518658 n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106D8CF5)

HSP 1 Score: 168 bits (425), Expect = 1.070e-45
Identity = 78/142 (54.93%), Postives = 106/142 (74.65%), Query Frame = 1 
Query:    1 KSFSSANDMDPGSVPDQLKGLTQAEEMLIAKGCPVMRVYRLKGGQRGYGGHVVNLAQNIGDFVNSLPRPAEELPIIVVRRQGGEGIHKDLLVRRQRVFDALNWLKANNPFYSDISVNTDNLNSLPDNGSLQDLYETSGDDDL 426
            K+FS+ NDMDPG VP+QL+GLTQ EEMLI++ CP+M+VYR  GGQRGY GHV+NL Q+I  F+N LP    +LP+++VRR+G +  HKD  VRR +VF+A+ WLK NNPF+ DI ++ D + SLP+NG  ++L     D +L
Sbjct:  253 KNFSAGNDMDPGIVPEQLRGLTQVEEMLISRVCPIMQVYRKHGGQRGYKGHVLNLPQDIQSFLNRLPAQVADLPVMIVRRRGADQTHKDFTVRRHKVFEAILWLKTNNPFFKDIEIDRDVIQSLPENGIPEELRYVIDDQEL 394
[Close]
BLAST of mRNA_A-nodosum_M_contig852.12.1 vs. uniprot
Match: A0A7D9I697_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9I697_PARCT)

HSP 1 Score: 160 bits (406), Expect = 6.360e-45
Identity = 74/133 (55.64%), Postives = 99/133 (74.44%), Query Frame = 1 
Query:    1 KSFSSANDMDPGSVPDQLKGLTQAEEMLIAKGCPVMRVYRLKGGQRGYGGHVVNLAQNIGDFVNSLPRPAEELPIIVVRRQGGEGIHKDLLVRRQRVFDALNWLKANNPFYSDISVNTDNLNSLPDNGSLQDL 399
            K FS+ NDMDPG+VP+QL+GLTQ EEMLI++ CP+MRVYR  GGQRGY GHV+NL Q+I  F+N LP    +LP+++VRR G E  H+D  VRR +V + + WLK NNPF+ +I ++ D + SLP+NG   +L
Sbjct:  262 KKFSAKNDMDPGTVPEQLRGLTQVEEMLISRVCPIMRVYRKHGGQRGYKGHVLNLPQDIQSFLNRLPSRVADLPVLIVRRHGAEDAHQDFTVRRHKVLEDVLWLKTNNPFFKNIKIDRDVIQSLPENGIPNEL 394
[Close]
BLAST of mRNA_A-nodosum_M_contig852.12.1 vs. uniprot
Match: A0A6S7JBU2_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JBU2_PARCT)

HSP 1 Score: 153 bits (386), Expect = 1.290e-44
Identity = 73/128 (57.03%), Postives = 95/128 (74.22%), Query Frame = 1 
Query:    1 KSFSSANDMDPGSVPDQLKGLTQAEEMLIAKGCPVMRVYRLKGGQRGYGGHVVNLAQNIGDFVNSLPRPAEELPIIVVRRQGGEGIHKDLLVRRQRVFDALNWLKANNPFYSDISVNTDNLNSLPDNG 384
            K FS+ NDMDPG VP+QL+GLTQ EEMLI++ CP+MRVYR  GGQRGY GHV+NL Q+I  F+N LP    +LP+++VRR G E    D  VRR +V +A+ WLK NNPF+ +I ++ D + SLP+NG
Sbjct:   48 KKFSAENDMDPGIVPEQLRGLTQVEEMLISRVCPIMRVYRKHGGQRGYKGHVLNLPQDIQSFLNRLPSRVADLPVLIVRRHGAE----DFTVRRHKVLEAVLWLKTNNPFFKNIEIDRDVIQSLPENG 171
[Close]
BLAST of mRNA_A-nodosum_M_contig852.12.1 vs. uniprot
Match: A0A7D9LY68_PARCT (Helitron_like_N domain-containing protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9LY68_PARCT)

HSP 1 Score: 163 bits (412), Expect = 2.360e-44
Identity = 76/133 (57.14%), Postives = 99/133 (74.44%), Query Frame = 1 
Query:    1 KSFSSANDMDPGSVPDQLKGLTQAEEMLIAKGCPVMRVYRLKGGQRGYGGHVVNLAQNIGDFVNSLPRPAEELPIIVVRRQGGEGIHKDLLVRRQRVFDALNWLKANNPFYSDISVNTDNLNSLPDNGSLQDL 399
            K FS+ NDMDPG VP+QL+GLTQ EEMLI++ CP+MRVYR  GGQRGY GHV+NL Q+I  F+N LP    +LP+++VRR G E  H D  VRR +VF+A+ WLK NNPF+ +I ++ D + SLP+NG   +L
Sbjct:  174 KKFSAENDMDPGIVPEQLRGLTQVEEMLISRVCPIMRVYRKHGGQRGYKGHVLNLPQDIQSFLNRLPSRVADLPVLIVRRHGAEDTHLDFTVRRHKVFEAVLWLKTNNPFFKNIEIDRDVIQSLPENGIPDEL 306
[Close]
BLAST of mRNA_A-nodosum_M_contig852.12.1 vs. uniprot
Match: A0A7D9LNP2_PARCT (Uncharacterized protein n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9LNP2_PARCT)

HSP 1 Score: 162 bits (410), Expect = 3.460e-44
Identity = 75/133 (56.39%), Postives = 99/133 (74.44%), Query Frame = 1 
Query:    1 KSFSSANDMDPGSVPDQLKGLTQAEEMLIAKGCPVMRVYRLKGGQRGYGGHVVNLAQNIGDFVNSLPRPAEELPIIVVRRQGGEGIHKDLLVRRQRVFDALNWLKANNPFYSDISVNTDNLNSLPDNGSLQDL 399
            K FS+ NDMDPG VP+QL+GLTQ EEMLI++ CP+MRVYR  GGQRGY GHV+NL Q+I  F+N LP    +LP+++VRR G E  H+D  VRR +V +A+ WLK NNPF+ +I ++ D + SLP+NG   +L
Sbjct:  316 KKFSAENDMDPGIVPEQLRGLTQVEEMLISRVCPIMRVYRKHGGQRGYKGHVLNLPQDIQSFLNRLPSRVADLPVLIVRRHGAEDTHRDFTVRRHKVLEAVLWLKTNNPFFKNIEIDRDVIQSLPENGIPHEL 448
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig852.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00106C8F718.790e-5054.93uncharacterized protein LOC114545138 n=1 Tax=Dendr... [more]
A0A6S7G3B5_PARCT4.440e-4658.40Uncharacterized protein n=1 Tax=Paramuricea clavat... [more]
UPI00106CBCF85.010e-4655.63uncharacterized protein LOC114518711 n=1 Tax=Dendr... [more]
A0A6S7JXT5_PARCT9.200e-4656.39Uncharacterized protein n=2 Tax=Paramuricea clavat... [more]
A0A7D9LMQ1_PARCT1.020e-4556.39Uncharacterized protein (Fragment) n=1 Tax=Paramur... [more]
UPI00106D8CF51.070e-4554.93uncharacterized protein LOC114518658 n=1 Tax=Dendr... [more]
A0A7D9I697_PARCT6.360e-4555.64Uncharacterized protein n=1 Tax=Paramuricea clavat... [more]
A0A6S7JBU2_PARCT1.290e-4457.03Uncharacterized protein n=1 Tax=Paramuricea clavat... [more]
A0A7D9LY68_PARCT2.360e-4457.14Helitron_like_N domain-containing protein (Fragmen... [more]
A0A7D9LNP2_PARCT3.460e-4456.39Uncharacterized protein n=2 Tax=Paramuricea clavat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig852contigA-nodosum_M_contig852:122983..123408 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog588596.U9UFR6
PFAMsHelitron_like_N,PIF1
Model size426
Max annot lvl4751|Fungi
KEGG koko:K15255
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.45e-37
EggNOG OGsCOG0507@1|root,KOG0987@2759|Eukaryota,3ABUV@33154|Opisthokonta,3P9IP@4751|Fungi
EC3.6.4.12
DescriptionBelongs to the helicase family
Cds size402
COG categoryL
BRITEko00000,ko01000,ko03029,ko03032
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870230.383757-UTR-A-nodosum_M_contig852:122982..1230061680870230.383757-UTR-A-nodosum_M_contig852:122982..123006Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig852 122983..123006 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870230.3984118-CDS-A-nodosum_M_contig852:123006..1234081680870230.3984118-CDS-A-nodosum_M_contig852:123006..123408Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig852 123007..123408 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig852.12.1prot_A-nodosum_M_contig852.12.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig852 123007..123408 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig852.12.1

>prot_A-nodosum_M_contig852.12.1 ID=prot_A-nodosum_M_contig852.12.1|Name=mRNA_A-nodosum_M_contig852.12.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=134bp
MDPGSVPDQLKGLTQAEEMLIAKGCPVMRVYRLKGGQRGYGGHVVNLAQN
IGDFVNSLPRPAEELPIIVVRRQGGEGIHKDLLVRRQRVFDALNWLKANN
PFYSDISVNTDNLNSLPDNGSLQDLYETSGDDDL
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mRNA from alignment at A-nodosum_M_contig852:122983..123408+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig852.12.1 ID=mRNA_A-nodosum_M_contig852.12.1|Name=mRNA_A-nodosum_M_contig852.12.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=426bp|location=Sequence derived from alignment at A-nodosum_M_contig852:122983..123408+ (Ascophyllum nodosum dioecious)
AAGTCTTTCTCTTCTGCCAACGACATGGACCCTGGATCTGTGCCGGACCA
ACTCAAGGGTCTCACTCAGGCGGAGGAGATGCTCATCGCCAAAGGCTGTC
CTGTCATGCGTGTCTATCGCCTTAAAGGGGGGCAGCGAGGGTACGGCGGT
CACGTCGTTAACTTGGCTCAGAATATCGGTGATTTCGTCAACAGCCTGCC
TCGGCCTGCTGAAGAGCTTCCCATTATTGTGGTGCGGCGTCAAGGCGGGG
AGGGTATTCACAAAGATCTCTTGGTGCGCCGGCAGAGGGTCTTCGACGCT
CTCAACTGGCTCAAGGCAAACAACCCCTTCTACAGCGATATTAGCGTAAA
CACGGATAACCTTAATTCGCTGCCGGATAACGGCTCCCTCCAAGACCTTT
ATGAGACGAGTGGGGATGATGACCTC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig852:122983..123408+

>mRNA_A-nodosum_M_contig852.12.1 ID=mRNA_A-nodosum_M_contig852.12.1|Name=mRNA_A-nodosum_M_contig852.12.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=402bp|location=Sequence derived from alignment at A-nodosum_M_contig852:122983..123408+ (Ascophyllum nodosum dioecious)
ATGGACCCTGGATCTGTGCCGGACCAACTCAAGGGTCTCACTCAGGCGGA
GGAGATGCTCATCGCCAAAGGCTGTCCTGTCATGCGTGTCTATCGCCTTA
AAGGGGGGCAGCGAGGGTACGGCGGTCACGTCGTTAACTTGGCTCAGAAT
ATCGGTGATTTCGTCAACAGCCTGCCTCGGCCTGCTGAAGAGCTTCCCAT
TATTGTGGTGCGGCGTCAAGGCGGGGAGGGTATTCACAAAGATCTCTTGG
TGCGCCGGCAGAGGGTCTTCGACGCTCTCAACTGGCTCAAGGCAAACAAC
CCCTTCTACAGCGATATTAGCGTAAACACGGATAACCTTAATTCGCTGCC
GGATAACGGCTCCCTCCAAGACCTTTATGAGACGAGTGGGGATGATGACC
TC
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