mRNA_A-nodosum_M_contig8511.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig8511.2.1
Unique NamemRNA_A-nodosum_M_contig8511.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig8511.2.1 vs. uniprot
Match: B3VMZ7_FUCSE (Heat shock protein 70 (Fragment) n=1 Tax=Fucus serratus TaxID=87148 RepID=B3VMZ7_FUCSE)

HSP 1 Score: 182 bits (462), Expect = 2.590e-53
Identity = 94/95 (98.95%), Postives = 95/95 (100.00%), Query Frame = 1 
Query:    1 EKNVLIFDLGGGTFDVSVLTIEEGIFEVKATAGDTHLGGEDFDNRMVDYFLQEFKRKFRKDMRSNSRALRRLRTACERAKRTLSSSTQAHIEIDS 285
            EKNVLIFDLGGGTFDVSVLTIEEGIFEVKATAGDTHLGGEDFDNRMVDYFLQEFKRKFRKDMRSNSRALRRLRTACERAKRTLS+STQAHIEIDS
Sbjct:   49 EKNVLIFDLGGGTFDVSVLTIEEGIFEVKATAGDTHLGGEDFDNRMVDYFLQEFKRKFRKDMRSNSRALRRLRTACERAKRTLSASTQAHIEIDS 143
[Close]
BLAST of mRNA_A-nodosum_M_contig8511.2.1 vs. uniprot
Match: A0A7S1E4B1_9STRA (Hypothetical protein (Fragment) n=2 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E4B1_9STRA)

HSP 1 Score: 171 bits (432), Expect = 3.700e-51
Identity = 87/95 (91.58%), Postives = 91/95 (95.79%), Query Frame = 1 
Query:    1 EKNVLIFDLGGGTFDVSVLTIEEGIFEVKATAGDTHLGGEDFDNRMVDYFLQEFKRKFRKDMRSNSRALRRLRTACERAKRTLSSSTQAHIEIDS 285
            EKNVLIFDLGGGTFDVS+LTIEEGIFEVKATAGDTHLGGEDFDNRMVDYFLQ+FKR+ RKDM  N R+LRRLRTACERAKRTLSSSTQAHIEIDS
Sbjct:  108 EKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVDYFLQDFKRRHRKDMSENQRSLRRLRTACERAKRTLSSSTQAHIEIDS 202
[Close]
BLAST of mRNA_A-nodosum_M_contig8511.2.1 vs. uniprot
Match: A0A7S2JW65_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JW65_9STRA)

HSP 1 Score: 169 bits (427), Expect = 3.780e-51
Identity = 85/95 (89.47%), Postives = 91/95 (95.79%), Query Frame = 1 
Query:    1 EKNVLIFDLGGGTFDVSVLTIEEGIFEVKATAGDTHLGGEDFDNRMVDYFLQEFKRKFRKDMRSNSRALRRLRTACERAKRTLSSSTQAHIEIDS 285
            EKNVLIFDLGGGTFDVS+LTIEEGIFEVKATAGDTHLGGEDFDNRMVDYFL +FK++F+KDM  N R+LRRLRTACERAKRTLSSSTQAHIEIDS
Sbjct:  123 EKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVDYFLADFKKRFKKDMSKNQRSLRRLRTACERAKRTLSSSTQAHIEIDS 217
[Close]
BLAST of mRNA_A-nodosum_M_contig8511.2.1 vs. uniprot
Match: A0A6H5JJT8_9PHAE (HSP70 protein n=10 Tax=Phaeophyceae TaxID=2870 RepID=A0A6H5JJT8_9PHAE)

HSP 1 Score: 177 bits (449), Expect = 1.810e-50
Identity = 91/95 (95.79%), Postives = 93/95 (97.89%), Query Frame = 1 
Query:    1 EKNVLIFDLGGGTFDVSVLTIEEGIFEVKATAGDTHLGGEDFDNRMVDYFLQEFKRKFRKDMRSNSRALRRLRTACERAKRTLSSSTQAHIEIDS 285
            E+NVLIFDLGGGTFDVSVLTIEEGIFEVKATAGDTHLGGEDFDNRMVDYFLQEFKRKFRKDM +N RALRRLRTACERAKRTLSSSTQAHIEIDS
Sbjct:  194 ERNVLIFDLGGGTFDVSVLTIEEGIFEVKATAGDTHLGGEDFDNRMVDYFLQEFKRKFRKDMSTNQRALRRLRTACERAKRTLSSSTQAHIEIDS 288
[Close]
BLAST of mRNA_A-nodosum_M_contig8511.2.1 vs. uniprot
Match: A0A7S3L8T6_9STRA (Hypothetical protein (Fragment) n=3 Tax=Bacillariophyta TaxID=2836 RepID=A0A7S3L8T6_9STRA)

HSP 1 Score: 173 bits (438), Expect = 2.420e-50
Identity = 89/95 (93.68%), Postives = 91/95 (95.79%), Query Frame = 1 
Query:    1 EKNVLIFDLGGGTFDVSVLTIEEGIFEVKATAGDTHLGGEDFDNRMVDYFLQEFKRKFRKDMRSNSRALRRLRTACERAKRTLSSSTQAHIEIDS 285
            EKNVLIFDLGGGTFDVS+LTIEEGIFEVKATAGDTHLGGEDFDNRMVDYFLQEFKR+ RKDM  N RALRRLRTACERAKRTLSSSTQAHIEIDS
Sbjct:  193 EKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVDYFLQEFKRRHRKDMSENQRALRRLRTACERAKRTLSSSTQAHIEIDS 287
[Close]
BLAST of mRNA_A-nodosum_M_contig8511.2.1 vs. uniprot
Match: A0A7S2MB93_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2MB93_9STRA)

HSP 1 Score: 171 bits (432), Expect = 3.150e-50
Identity = 87/95 (91.58%), Postives = 91/95 (95.79%), Query Frame = 1 
Query:    1 EKNVLIFDLGGGTFDVSVLTIEEGIFEVKATAGDTHLGGEDFDNRMVDYFLQEFKRKFRKDMRSNSRALRRLRTACERAKRTLSSSTQAHIEIDS 285
            EKNVLIFDLGGGTFDVS+LTIEEGIFEVKATAGDTHLGGEDFDNRMVDYFLQ+FKR+ RKDM  N R+LRRLRTACERAKRTLSSSTQAHIEIDS
Sbjct:   14 EKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVDYFLQDFKRRHRKDMSQNQRSLRRLRTACERAKRTLSSSTQAHIEIDS 108
[Close]
BLAST of mRNA_A-nodosum_M_contig8511.2.1 vs. uniprot
Match: A0A7S3H838_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H838_9STRA)

HSP 1 Score: 164 bits (415), Expect = 5.320e-50
Identity = 82/94 (87.23%), Postives = 90/94 (95.74%), Query Frame = 1 
Query:    4 KNVLIFDLGGGTFDVSVLTIEEGIFEVKATAGDTHLGGEDFDNRMVDYFLQEFKRKFRKDMRSNSRALRRLRTACERAKRTLSSSTQAHIEIDS 285
            KNVLIFDLGGGTFDVS+L+IEEGIFEVKATAGDTHLGGEDFDNR+VDYF+ EFKRK++KDM  N RALRRLRTACERAKRTLS++TQAHIEIDS
Sbjct:   51 KNVLIFDLGGGTFDVSLLSIEEGIFEVKATAGDTHLGGEDFDNRLVDYFVDEFKRKYKKDMSQNQRALRRLRTACERAKRTLSNTTQAHIEIDS 144
[Close]
BLAST of mRNA_A-nodosum_M_contig8511.2.1 vs. uniprot
Match: A0A7S2UY12_9STRA (Hypothetical protein (Fragment) n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UY12_9STRA)

HSP 1 Score: 174 bits (442), Expect = 1.260e-49
Identity = 88/95 (92.63%), Postives = 93/95 (97.89%), Query Frame = 1 
Query:    1 EKNVLIFDLGGGTFDVSVLTIEEGIFEVKATAGDTHLGGEDFDNRMVDYFLQEFKRKFRKDMRSNSRALRRLRTACERAKRTLSSSTQAHIEIDS 285
            EKNVLIFDLGGGTFDVS+LTIEEGIFEVKATAGDTHLGGEDFDNRMVDYF+QEFK+KF+KD+RSN RALRRLRTACERAKRTLSSS QAHIEIDS
Sbjct:  195 EKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVDYFIQEFKKKFKKDLRSNQRALRRLRTACERAKRTLSSSAQAHIEIDS 289
[Close]
BLAST of mRNA_A-nodosum_M_contig8511.2.1 vs. uniprot
Match: A0A7S3Y1R9_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1R9_HETAK)

HSP 1 Score: 168 bits (426), Expect = 1.650e-49
Identity = 85/95 (89.47%), Postives = 92/95 (96.84%), Query Frame = 1 
Query:    1 EKNVLIFDLGGGTFDVSVLTIEEGIFEVKATAGDTHLGGEDFDNRMVDYFLQEFKRKFRKDMRSNSRALRRLRTACERAKRTLSSSTQAHIEIDS 285
            EKNVLIFDLGGGTFDVS+L+IEEGIFEVKATAGDTHLGGEDFDNR+VD+F+ EFKRKFRKD+R N RALRRLRTACERAKR+LSSSTQAHIEIDS
Sbjct:  220 EKNVLIFDLGGGTFDVSLLSIEEGIFEVKATAGDTHLGGEDFDNRLVDHFMAEFKRKFRKDIRDNQRALRRLRTACERAKRSLSSSTQAHIEIDS 314
[Close]
BLAST of mRNA_A-nodosum_M_contig8511.2.1 vs. uniprot
Match: Q2TTE3_9STRA (HSP70 (Fragment) n=1 Tax=Stramenopile sp. ex Nuclearia delicatula CCAP1552/1 TaxID=289359 RepID=Q2TTE3_9STRA)

HSP 1 Score: 167 bits (424), Expect = 2.910e-49
Identity = 85/95 (89.47%), Postives = 91/95 (95.79%), Query Frame = 1 
Query:    1 EKNVLIFDLGGGTFDVSVLTIEEGIFEVKATAGDTHLGGEDFDNRMVDYFLQEFKRKFRKDMRSNSRALRRLRTACERAKRTLSSSTQAHIEIDS 285
            EKNVLIFDLGGGTFDVS+LTIEEGIFEVKATAGDTHLGGEDFDNR+V++F QEFKRKF+KD+  N RALRRLRTACERAKRTLSSSTQAHIEIDS
Sbjct:  162 EKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVEHFTQEFKRKFKKDISENQRALRRLRTACERAKRTLSSSTQAHIEIDS 256
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8511.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
B3VMZ7_FUCSE2.590e-5398.95Heat shock protein 70 (Fragment) n=1 Tax=Fucus ser... [more]
A0A7S1E4B1_9STRA3.700e-5191.58Hypothetical protein (Fragment) n=2 Tax=Thalassion... [more]
A0A7S2JW65_9STRA3.780e-5189.47Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A6H5JJT8_9PHAE1.810e-5095.79HSP70 protein n=10 Tax=Phaeophyceae TaxID=2870 Rep... [more]
A0A7S3L8T6_9STRA2.420e-5093.68Hypothetical protein (Fragment) n=3 Tax=Bacillario... [more]
A0A7S2MB93_9STRA3.150e-5091.58Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A7S3H838_9STRA5.320e-5087.23Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S2UY12_9STRA1.260e-4992.63Hypothetical protein (Fragment) n=2 Tax=Fibrocapsa... [more]
A0A7S3Y1R9_HETAK1.650e-4989.47Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
Q2TTE3_9STRA2.910e-4989.47HSP70 (Fragment) n=1 Tax=Stramenopile sp. ex Nucle... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8511contigA-nodosum_M_contig8511:7440..7930 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LI58
PFAMsHSP70
Model size287
Max annot lvl2759|Eukaryota
KEGG koko:K03283
KEGG TC1.A.33.1
KEGG Pathwayko03040,ko04010,ko04141,ko04144,ko04213,ko04612,ko04915,ko05134,ko05145,ko05162,ko05164,ko05169,map03040,map04010,map04141,map04144,map04213,map04612,map04915,map05134,map05145,map05162,map05164,map05169
KEGG ModuleM00353,M00355
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005815,GO:0005829,GO:0005856,GO:0015630,GO:0031982,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464
Exons2
Evalue9.51e-50
EggNOG OGsCOG0443@1|root,KOG0101@2759|Eukaryota
DescriptionATP binding
Cds size285
COG categoryO
BRITEko00000,ko00001,ko00002,ko01009,ko03009,ko03029,ko03041,ko03051,ko03110,ko04131,ko04147,ko04516
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870229.7600539-CDS-A-nodosum_M_contig8511:7441..75701680870229.7600539-CDS-A-nodosum_M_contig8511:7441..7570Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8511 7442..7570 -
1680870229.7736504-CDS-A-nodosum_M_contig8511:7774..79301680870229.7736504-CDS-A-nodosum_M_contig8511:7774..7930Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8511 7775..7930 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8511.2.1prot_A-nodosum_M_contig8511.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig8511 7442..7930 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig8511.2.1

>prot_A-nodosum_M_contig8511.2.1 ID=prot_A-nodosum_M_contig8511.2.1|Name=mRNA_A-nodosum_M_contig8511.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=95bp
EKNVLIFDLGGGTFDVSVLTIEEGIFEVKATAGDTHLGGEDFDNRMVDYF
LQEFKRKFRKDMRSNSRALRRLRTACERAKRTLSSSTQAHIEIDS
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mRNA from alignment at A-nodosum_M_contig8511:7440..7930-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig8511.2.1 ID=mRNA_A-nodosum_M_contig8511.2.1|Name=mRNA_A-nodosum_M_contig8511.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=491bp|location=Sequence derived from alignment at A-nodosum_M_contig8511:7440..7930- (Ascophyllum nodosum dioecious)
GAGAAGAACGTTCTTATCTTCGACCTCGGTGGCGGCACGTTCGACGTGTC
TGTTCTCACGATCGAGGAAGGGATCTTCGAGGTTAAGGCCACTGCGGGAG
ACACTCACTTGGGAGGGGAGGACTTCGACAACCGTATGGTGGACTACTTC
CTCCAGGTATAGCTTGCTCTGCTTGCCTTATAGAACAAAATCATAACGGT
TTAAGATAAAAAATACTATACGCGCGATACTGTAAGGGAAGGTGGTCCAC
ACAGAGCAGTGAAAATTGGCACGTCATGTAGTGCAGTGCGACGCCATGAA
ATCTTATCGCCCCTTGACGACGTTGGTGCGTTTTTGGTCATCTATGTCCA
CAATCTGCAGGAGTTTAAGCGTAAGTTCCGCAAGGACATGCGCTCCAACA
GCCGCGCACTACGACGTCTGCGCACGGCGTGCGAGCGCGCGAAGCGTACG
CTCTCGTCGTCGACCCAGGCGCACATCGAGATCGACTCGCT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig8511:7440..7930-

>mRNA_A-nodosum_M_contig8511.2.1 ID=mRNA_A-nodosum_M_contig8511.2.1|Name=mRNA_A-nodosum_M_contig8511.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=285bp|location=Sequence derived from alignment at A-nodosum_M_contig8511:7440..7930- (Ascophyllum nodosum dioecious)
GAGAAGAACGTTCTTATCTTCGACCTCGGTGGCGGCACGTTCGACGTGTC
TGTTCTCACGATCGAGGAAGGGATCTTCGAGGTTAAGGCCACTGCGGGAG
ACACTCACTTGGGAGGGGAGGACTTCGACAACCGTATGGTGGACTACTTC
CTCCAGGAGTTTAAGCGTAAGTTCCGCAAGGACATGCGCTCCAACAGCCG
CGCACTACGACGTCTGCGCACGGCGTGCGAGCGCGCGAAGCGTACGCTCT
CGTCGTCGACCCAGGCGCACATCGAGATCGACTCG
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