mRNA_A-nodosum_M_contig8511.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig8511.1.1
Unique NamemRNA_A-nodosum_M_contig8511.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig8511.1.1 vs. uniprot
Match: A0A220VZE0_9PHAE (Heat shock protein 70 (Fragment) n=1 Tax=Sargassum thunbergii TaxID=127542 RepID=A0A220VZE0_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 2.080e-43
Identity = 77/78 (98.72%), Postives = 77/78 (98.72%), Query Frame = 1 
Query:    1 TVQAAILSGQDKSDKLNSLLLLDVTPLGLGLETAGGVMTTLIKRNTTVPAKKSQVFSTYADNQPGVLIQVYEGERTMT 234
            TVQAAILSGQDKSDKLNSLLLLDVTPLGLGLETAGGVMTTLIKRNTTVPAKKSQVFSTYADNQPGVLIQVYEGERT T
Sbjct:   86 TVQAAILSGQDKSDKLNSLLLLDVTPLGLGLETAGGVMTTLIKRNTTVPAKKSQVFSTYADNQPGVLIQVYEGERTTT 163
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BLAST of mRNA_A-nodosum_M_contig8511.1.1 vs. uniprot
Match: B3VMZ7_FUCSE (Heat shock protein 70 (Fragment) n=1 Tax=Fucus serratus TaxID=87148 RepID=B3VMZ7_FUCSE)

HSP 1 Score: 149 bits (375), Expect = 6.590e-41
Identity = 77/78 (98.72%), Postives = 77/78 (98.72%), Query Frame = 1 
Query:    1 TVQAAILSGQDKSDKLNSLLLLDVTPLGLGLETAGGVMTTLIKRNTTVPAKKSQVFSTYADNQPGVLIQVYEGERTMT 234
            TVQA ILSGQDKSDKLNSLLLLDVTPLGLGLETAGGVMTTLIKRNTTVPAKKSQVFSTYADNQPGVLIQVYEGERTMT
Sbjct:  231 TVQAGILSGQDKSDKLNSLLLLDVTPLGLGLETAGGVMTTLIKRNTTVPAKKSQVFSTYADNQPGVLIQVYEGERTMT 308
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BLAST of mRNA_A-nodosum_M_contig8511.1.1 vs. uniprot
Match: A0A7S3M861_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M861_9STRA)

HSP 1 Score: 135 bits (341), Expect = 6.030e-40
Identity = 70/78 (89.74%), Postives = 72/78 (92.31%), Query Frame = 1 
Query:    1 TVQAAILSGQDKSDKLNSLLLLDVTPLGLGLETAGGVMTTLIKRNTTVPAKKSQVFSTYADNQPGVLIQVYEGERTMT 234
            TVQAAILSG DKS+KL  LLLLDVTPL LGLETAGGVMTTLIKRNTTVPAKKSQ FSTYADNQPGVLIQV+EGER MT
Sbjct:   11 TVQAAILSGHDKSEKLQDLLLLDVTPLSLGLETAGGVMTTLIKRNTTVPAKKSQTFSTYADNQPGVLIQVFEGERAMT 88
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BLAST of mRNA_A-nodosum_M_contig8511.1.1 vs. uniprot
Match: A0A6H5JJT8_9PHAE (HSP70 protein n=10 Tax=Phaeophyceae TaxID=2870 RepID=A0A6H5JJT8_9PHAE)

HSP 1 Score: 143 bits (360), Expect = 3.520e-38
Identity = 74/78 (94.87%), Postives = 76/78 (97.44%), Query Frame = 1 
Query:    1 TVQAAILSGQDKSDKLNSLLLLDVTPLGLGLETAGGVMTTLIKRNTTVPAKKSQVFSTYADNQPGVLIQVYEGERTMT 234
            TVQAAILSG+DKSDKL+SLLLLDVTPLG GLETAGGVMTTLIKRNTTVP KKSQVFSTYADNQPGVLIQVYEGERTMT
Sbjct:  376 TVQAAILSGKDKSDKLDSLLLLDVTPLGQGLETAGGVMTTLIKRNTTVPVKKSQVFSTYADNQPGVLIQVYEGERTMT 453
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BLAST of mRNA_A-nodosum_M_contig8511.1.1 vs. uniprot
Match: A0A7S0Q7M8_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0Q7M8_9EUKA)

HSP 1 Score: 137 bits (344), Expect = 3.930e-38
Identity = 70/78 (89.74%), Postives = 73/78 (93.59%), Query Frame = 1 
Query:    1 TVQAAILSGQDKSDKLNSLLLLDVTPLGLGLETAGGVMTTLIKRNTTVPAKKSQVFSTYADNQPGVLIQVYEGERTMT 234
            TVQAAILSGQDKS+KL  LLLLDVTPL LG+ETAGGVMTTLIKRNTTVPAKKSQ FSTYADNQPGVLIQV+EGER MT
Sbjct:  160 TVQAAILSGQDKSEKLQDLLLLDVTPLSLGIETAGGVMTTLIKRNTTVPAKKSQTFSTYADNQPGVLIQVFEGERAMT 237
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BLAST of mRNA_A-nodosum_M_contig8511.1.1 vs. uniprot
Match: A0A0H5R7E5_9EUKA (Uncharacterized protein (Fragment) n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5R7E5_9EUKA)

HSP 1 Score: 130 bits (328), Expect = 3.000e-37
Identity = 67/78 (85.90%), Postives = 71/78 (91.03%), Query Frame = 1 
Query:    1 TVQAAILSGQDKSDKLNSLLLLDVTPLGLGLETAGGVMTTLIKRNTTVPAKKSQVFSTYADNQPGVLIQVYEGERTMT 234
            TVQAAILSG D+S+KL  LLLLDVTPL LGLETAGGVMTTLI RNTTVP KKSQ FSTYADNQPGVLIQV+EGER+MT
Sbjct:   23 TVQAAILSGNDQSEKLQDLLLLDVTPLSLGLETAGGVMTTLIARNTTVPTKKSQTFSTYADNQPGVLIQVFEGERSMT 100
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BLAST of mRNA_A-nodosum_M_contig8511.1.1 vs. uniprot
Match: A0A835Z7M3_9STRA (Heat shock protein 70 n=3 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7M3_9STRA)

HSP 1 Score: 139 bits (351), Expect = 6.530e-37
Identity = 72/78 (92.31%), Postives = 74/78 (94.87%), Query Frame = 1 
Query:    1 TVQAAILSGQDKSDKLNSLLLLDVTPLGLGLETAGGVMTTLIKRNTTVPAKKSQVFSTYADNQPGVLIQVYEGERTMT 234
            TVQAAILSGQDKS+KL+ LLLLDVTPL LGLETAGGVMTTLIKRNTTVPAKKSQ FSTYADNQPGVLIQVYEGER MT
Sbjct:  376 TVQAAILSGQDKSEKLSDLLLLDVTPLSLGLETAGGVMTTLIKRNTTVPAKKSQTFSTYADNQPGVLIQVYEGERAMT 453
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BLAST of mRNA_A-nodosum_M_contig8511.1.1 vs. uniprot
Match: Q5G8Z8_HETAK (Heat shock protein 70 (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=Q5G8Z8_HETAK)

HSP 1 Score: 137 bits (346), Expect = 6.770e-37
Identity = 71/78 (91.03%), Postives = 74/78 (94.87%), Query Frame = 1 
Query:    1 TVQAAILSGQDKSDKLNSLLLLDVTPLGLGLETAGGVMTTLIKRNTTVPAKKSQVFSTYADNQPGVLIQVYEGERTMT 234
            TVQAAILSGQD+S+KL  LLLLDVTPL LGLETAGGVMT LIKRNTTVPAKKSQVFSTYADNQPGVLIQVYEGER+MT
Sbjct:  368 TVQAAILSGQDQSEKLQDLLLLDVTPLSLGLETAGGVMTVLIKRNTTVPAKKSQVFSTYADNQPGVLIQVYEGERSMT 445
[Close]
BLAST of mRNA_A-nodosum_M_contig8511.1.1 vs. uniprot
Match: A0A7S1H2V1_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1H2V1_9STRA)

HSP 1 Score: 133 bits (335), Expect = 9.390e-37
Identity = 68/78 (87.18%), Postives = 74/78 (94.87%), Query Frame = 1 
Query:    1 TVQAAILSGQDKSDKLNSLLLLDVTPLGLGLETAGGVMTTLIKRNTTVPAKKSQVFSTYADNQPGVLIQVYEGERTMT 234
            +VQAAILSG DKS+KL+ LLLLDVTPL LGLETAGGVMTTLIKRNTTVPAKK+Q FSTYADNQPGVLIQV+EGER+MT
Sbjct:    6 SVQAAILSGADKSEKLSELLLLDVTPLSLGLETAGGVMTTLIKRNTTVPAKKTQTFSTYADNQPGVLIQVFEGERSMT 83
[Close]
BLAST of mRNA_A-nodosum_M_contig8511.1.1 vs. uniprot
Match: A0A6H5KQY2_9PHAE (HSP70 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQY2_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 1.560e-36
Identity = 71/78 (91.03%), Postives = 76/78 (97.44%), Query Frame = 1 
Query:    1 TVQAAILSGQDKSDKLNSLLLLDVTPLGLGLETAGGVMTTLIKRNTTVPAKKSQVFSTYADNQPGVLIQVYEGERTMT 234
            TVQAAILSG+DKSDKL+SLLLLDVTPLGLGLETAGGVM+ LIKRNTTVP KKSQVFSTYADNQPGVLIQV+EGER+MT
Sbjct:  376 TVQAAILSGKDKSDKLDSLLLLDVTPLGLGLETAGGVMSVLIKRNTTVPVKKSQVFSTYADNQPGVLIQVFEGERSMT 453
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8511.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A220VZE0_9PHAE2.080e-4398.72Heat shock protein 70 (Fragment) n=1 Tax=Sargassum... [more]
B3VMZ7_FUCSE6.590e-4198.72Heat shock protein 70 (Fragment) n=1 Tax=Fucus ser... [more]
A0A7S3M861_9STRA6.030e-4089.74Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A6H5JJT8_9PHAE3.520e-3894.87HSP70 protein n=10 Tax=Phaeophyceae TaxID=2870 Rep... [more]
A0A7S0Q7M8_9EUKA3.930e-3889.74Hypothetical protein (Fragment) n=1 Tax=Coccolithu... [more]
A0A0H5R7E5_9EUKA3.000e-3785.90Uncharacterized protein (Fragment) n=1 Tax=Spongos... [more]
A0A835Z7M3_9STRA6.530e-3792.31Heat shock protein 70 n=3 Tax=Tribonema minus TaxI... [more]
Q5G8Z8_HETAK6.770e-3791.03Heat shock protein 70 (Fragment) n=1 Tax=Heterosig... [more]
A0A7S1H2V1_9STRA9.390e-3787.18Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]
A0A6H5KQY2_9PHAE1.560e-3691.03HSP70 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8511contigA-nodosum_M_contig8511:6740..6975 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog35128.Thaps269120
PFAMsHSP70
Model size236
Max annot lvl2836|Bacillariophyta
KEGG koko:K03283
KEGG TC1.A.33.1
KEGG Pathwayko03040,ko04010,ko04141,ko04144,ko04213,ko04612,ko04915,ko05134,ko05145,ko05162,ko05164,ko05169,map03040,map04010,map04141,map04144,map04213,map04612,map04915,map05134,map05145,map05162,map05164,map05169
KEGG ModuleM00353,M00355
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.65e-36
EggNOG OGsCOG0443@1|root,KOG0101@2759|Eukaryota,2XB2X@2836|Bacillariophyta
DescriptionHeat shock protein
Cds size234
COG categoryO
BRITEko00000,ko00001,ko00002,ko01009,ko03009,ko03029,ko03041,ko03051,ko03110,ko04131,ko04147,ko04516
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870229.7263923-CDS-A-nodosum_M_contig8511:6741..69751680870229.7263923-CDS-A-nodosum_M_contig8511:6741..6975Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8511 6742..6975 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8511.1.1prot_A-nodosum_M_contig8511.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig8511 6742..6975 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig8511.1.1

>prot_A-nodosum_M_contig8511.1.1 ID=prot_A-nodosum_M_contig8511.1.1|Name=mRNA_A-nodosum_M_contig8511.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=78bp
TVQAAILSGQDKSDKLNSLLLLDVTPLGLGLETAGGVMTTLIKRNTTVPA
KKSQVFSTYADNQPGVLIQVYEGERTMT
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mRNA from alignment at A-nodosum_M_contig8511:6740..6975-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig8511.1.1 ID=mRNA_A-nodosum_M_contig8511.1.1|Name=mRNA_A-nodosum_M_contig8511.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=236bp|location=Sequence derived from alignment at A-nodosum_M_contig8511:6740..6975- (Ascophyllum nodosum dioecious)
ACCGTGCAGGCTGCGATCCTGTCTGGCCAGGACAAGTCCGACAAGCTCAA
CTCTCTTCTGCTGCTGGACGTGACTCCTCTTGGCCTCGGTCTGGAAACGG
CCGGCGGCGTGATGACCACGCTCATCAAGCGCAACACTACGGTACCGGCA
AAGAAATCTCAGGTGTTCTCGACCTACGCCGACAACCAGCCCGGGGTGCT
TATCCAGGTGTACGAGGGAGAGCGCACCATGACCCG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig8511:6740..6975-

>mRNA_A-nodosum_M_contig8511.1.1 ID=mRNA_A-nodosum_M_contig8511.1.1|Name=mRNA_A-nodosum_M_contig8511.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=234bp|location=Sequence derived from alignment at A-nodosum_M_contig8511:6740..6975- (Ascophyllum nodosum dioecious)
ACCGTGCAGGCTGCGATCCTGTCTGGCCAGGACAAGTCCGACAAGCTCAA
CTCTCTTCTGCTGCTGGACGTGACTCCTCTTGGCCTCGGTCTGGAAACGG
CCGGCGGCGTGATGACCACGCTCATCAAGCGCAACACTACGGTACCGGCA
AAGAAATCTCAGGTGTTCTCGACCTACGCCGACAACCAGCCCGGGGTGCT
TATCCAGGTGTACGAGGGAGAGCGCACCATGACC
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