mRNA_A-nodosum_M_contig85.54.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig85.54.1
Unique NamemRNA_A-nodosum_M_contig85.54.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig85.54.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig85contigA-nodosum_M_contig85:971707..972540 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size309
Hectar predicted targeting categoryother localisation
Exons3
Cds size306
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870225.0107963-CDS-A-nodosum_M_contig85:971706..9718661680870225.0107963-CDS-A-nodosum_M_contig85:971706..971866Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig85 971707..971866 +
1680870225.0243995-CDS-A-nodosum_M_contig85:972236..9723501680870225.0243995-CDS-A-nodosum_M_contig85:972236..972350Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig85 972237..972350 +
1680870225.0355172-CDS-A-nodosum_M_contig85:972506..9725381680870225.0355172-CDS-A-nodosum_M_contig85:972506..972538Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig85 972507..972538 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig85.54.1prot_A-nodosum_M_contig85.54.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig85 971707..972538 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig85.54.1

>prot_A-nodosum_M_contig85.54.1 ID=prot_A-nodosum_M_contig85.54.1|Name=mRNA_A-nodosum_M_contig85.54.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=102bp
SWDLNAGTRSTETESFRSARVARRRATYAERTERQRLRDAHERRMAGGAS
PAAVLTNAVTRLAWQQHQANVNAAAEAAALRAMHEESARLAAANAAADEA
AR
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mRNA from alignment at A-nodosum_M_contig85:971707..972540+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig85.54.1 ID=mRNA_A-nodosum_M_contig85.54.1|Name=mRNA_A-nodosum_M_contig85.54.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=834bp|location=Sequence derived from alignment at A-nodosum_M_contig85:971707..972540+ (Ascophyllum nodosum dioecious)
TCGTGGGATTTGAACGCCGGCACAAGGTCCACGGAAACTGAAAGTTTTAG
GTCGGCTCGTGTGGCTAGAAGACGGGCTACGTACGCCGAGCGAACGGAAC
GACAGCGCCTGCGTGATGCTCACGAAAGACGTATGGCGGGAGGCGCTAGT
CCTGCTGCAGGTGACAGCACCAGCAATTGGAAAACAAGGTTCTGTTGAGA
GAGCGTTCATTCGTTTGTGCCTTCAGTGTACGTAGACGAACTGCTGTGCT
ATTATAAAAACAAGAGAATTATATTTGCGATATTTGTTCGTCAAGCGTTC
CTGCCATGTTATACTATCTACCAATGTTTTCATATTACGTACGTCTCTCC
TGCCCACTGCATTCGTTTGTGCCTTAAGTTTACGTAGACGAACTGCTGTG
CTATTATAAAAACAAGAGAATTCTATTTGCGATATTTGTTCAAGTGTTCC
TGCCATGTTATACTATCTACTAATGTTTTTGATATTACGTACGTCTCTCC
TGCCCACTGCACTGTGCGTACGTTTCGTAGTCCTTACAAACGCGGTAACA
CGGCTAGCTTGGCAACAACACCAGGCAAATGTTAATGCAGCTGCGGAGGC
GGCGGCATTGCGAGCTATGCATGAAGAATCGGCACGACTGGCAGGTGAAT
CTAACGGCGGGCGTGTAGCATAGACCTTTTACCTCCCGAAAATTAAGTGG
AAATAATATTTACATCAGTCAGGGGAAAAAACACCAACGAATTTCAAATT
cCCTCGTCCTCTGTTCTATGCGCCTGTGCCACTCTGCTTGGGTTTCATAG
CCGCGAACGCTGCTGCAGACGAGGCCGCAAGGAT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig85:971707..972540+

>mRNA_A-nodosum_M_contig85.54.1 ID=mRNA_A-nodosum_M_contig85.54.1|Name=mRNA_A-nodosum_M_contig85.54.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=306bp|location=Sequence derived from alignment at A-nodosum_M_contig85:971707..972540+ (Ascophyllum nodosum dioecious)
TCGTGGGATTTGAACGCCGGCACAAGGTCCACGGAAACTGAAAGTTTTAG
GTCGGCTCGTGTGGCTAGAAGACGGGCTACGTACGCCGAGCGAACGGAAC
GACAGCGCCTGCGTGATGCTCACGAAAGACGTATGGCGGGAGGCGCTAGT
CCTGCTGCAGTCCTTACAAACGCGGTAACACGGCTAGCTTGGCAACAACA
CCAGGCAAATGTTAATGCAGCTGCGGAGGCGGCGGCATTGCGAGCTATGC
ATGAAGAATCGGCACGACTGGCAGCCGCGAACGCTGCTGCAGACGAGGCC
GCAAGG
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