mRNA_A-nodosum_M_contig8492.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig8492.1.1
Unique NamemRNA_A-nodosum_M_contig8492.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8492.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8492contigA-nodosum_M_contig8492:13395..14175 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size781
Hectar predicted targeting categoryother localisation
Exons1
Cds size441
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870224.8079658-UTR-A-nodosum_M_contig8492:13394..136981680870224.8079658-UTR-A-nodosum_M_contig8492:13394..13698Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig8492 13395..13698 -
1680870224.8295512-UTR-A-nodosum_M_contig8492:14139..141751680870224.8295512-UTR-A-nodosum_M_contig8492:14139..14175Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig8492 14140..14175 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870224.8189547-CDS-A-nodosum_M_contig8492:13698..141391680870224.8189547-CDS-A-nodosum_M_contig8492:13698..14139Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8492 13699..14139 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8492.1.1prot_A-nodosum_M_contig8492.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig8492 13699..14139 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig8492.1.1

>prot_A-nodosum_M_contig8492.1.1 ID=prot_A-nodosum_M_contig8492.1.1|Name=mRNA_A-nodosum_M_contig8492.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=147bp
MSTRIATRSTSQARGNHQEIIDVGSSNVYRGRGSSLASSQSSGKNTPIDK
EERTHRGRHCRAHPVRKDGRLRYERARKEPSPINGRVVPYDTTTTGQLVP
LAEGNHTATGGIGNKIYCLGYSRGESMVANGKAETELSGAAPKTGA*
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mRNA from alignment at A-nodosum_M_contig8492:13395..14175-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig8492.1.1 ID=mRNA_A-nodosum_M_contig8492.1.1|Name=mRNA_A-nodosum_M_contig8492.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=781bp|location=Sequence derived from alignment at A-nodosum_M_contig8492:13395..14175- (Ascophyllum nodosum dioecious)
AACCTGTCTGGGGGATATCATCTAGTTCAACATGGGATGTCCACCAGGAT
CGCGACGAGGTCGACCTCGCAGGCACGGGGGAATCACCAAGAAATAATTG
ACGTAGGCAGCTCCAATGTCTATCGCGGACGAGGTTCATCGCTGGCATCT
TCACAATCAAGCGGGAAGAATACACCCATCGACAAGGAGGAGAGAACACA
CCGCGGTCGTCATTGTCGTGCACACCCAGTCCGGAAAGACGGTAGGTTGA
GATATGAGCGAGCGAGGAAGGAGCCTTCGCCAATCAACGGCCGGGTCGTT
CCGTATGATACCACAACGACCGGCCAGCTCGTTCCCCTGGCCGAGGGCAA
CCATACGGCGACAGGCGGAATCGGTAACAAGATTTACTGCCTCGGCTATA
GCAGAGGCGAGAGTATGGTGGCAAACGGGAAAGCCGAGACAGAATTATCT
GGGGCGGCTCCGAAGACCGGTGCGTAGAAAACTTGAGAGTTGATGGGCGC
GAGCGCGGGAAAGGGACCGTTACAAGTAACGAGTGGCGCTACGACGAACC
CCCGGAGAGGCGCGGTATCTGCTACAACAGCCCAAAATCACCGCGAGGAC
GACGGTTGGGGGCTCGATCGTACACGCAGAATAAGCCGTGACGATGACGG
TTACACCGCGTCGTATACGTCTGGCGAGAAGACCACTGAGTCTGTGCCCC
ACCCAGCTAGACAGCATCATGTGTGCGCCCTCGCCAATATCGCTTCAACG
CTGCTGCGGGATATGGGGGATTTAAGGGCGG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig8492:13395..14175-

>mRNA_A-nodosum_M_contig8492.1.1 ID=mRNA_A-nodosum_M_contig8492.1.1|Name=mRNA_A-nodosum_M_contig8492.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=441bp|location=Sequence derived from alignment at A-nodosum_M_contig8492:13395..14175- (Ascophyllum nodosum dioecious)
ATGTCCACCAGGATCGCGACGAGGTCGACCTCGCAGGCACGGGGGAATCA
CCAAGAAATAATTGACGTAGGCAGCTCCAATGTCTATCGCGGACGAGGTT
CATCGCTGGCATCTTCACAATCAAGCGGGAAGAATACACCCATCGACAAG
GAGGAGAGAACACACCGCGGTCGTCATTGTCGTGCACACCCAGTCCGGAA
AGACGGTAGGTTGAGATATGAGCGAGCGAGGAAGGAGCCTTCGCCAATCA
ACGGCCGGGTCGTTCCGTATGATACCACAACGACCGGCCAGCTCGTTCCC
CTGGCCGAGGGCAACCATACGGCGACAGGCGGAATCGGTAACAAGATTTA
CTGCCTCGGCTATAGCAGAGGCGAGAGTATGGTGGCAAACGGGAAAGCCG
AGACAGAATTATCTGGGGCGGCTCCGAAGACCGGTGCGTAG
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