mRNA_A-nodosum_M_contig8490.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig8490.2.1
Unique NamemRNA_A-nodosum_M_contig8490.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8490.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8490contigA-nodosum_M_contig8490:20545..21484 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size373
Hectar predicted targeting categorysignal anchor
Exons3
Cds size372
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870224.6663353-CDS-A-nodosum_M_contig8490:20544..207491680870224.6663353-CDS-A-nodosum_M_contig8490:20544..20749Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8490 20545..20749 -
1680870224.680595-CDS-A-nodosum_M_contig8490:21070..212061680870224.680595-CDS-A-nodosum_M_contig8490:21070..21206Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8490 21071..21206 -
1680870224.7729936-CDS-A-nodosum_M_contig8490:21453..214841680870224.7729936-CDS-A-nodosum_M_contig8490:21453..21484Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8490 21454..21484 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8490.2.1prot_A-nodosum_M_contig8490.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig8490 20545..21484 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig8490.2.1

>prot_A-nodosum_M_contig8490.2.1 ID=prot_A-nodosum_M_contig8490.2.1|Name=mRNA_A-nodosum_M_contig8490.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=124bp
MALFFGNFFWGQWIASLIAIVIGCVVLFQFNKCAYTAAAFLYPIAMIFDI
ISVLFWIMCTETIMDYIADDDISEDKAETSIKLLSTAPGLGAVCLLLGTI
VTCAATRNWEKSGAADAVAVVECR
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mRNA from alignment at A-nodosum_M_contig8490:20545..21484-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig8490.2.1 ID=mRNA_A-nodosum_M_contig8490.2.1|Name=mRNA_A-nodosum_M_contig8490.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=940bp|location=Sequence derived from alignment at A-nodosum_M_contig8490:20545..21484- (Ascophyllum nodosum dioecious)
ATGGCTCTCTTCTTCGGCAATTTTTTCTGGGGTAAGAAGTAATTCATCCA
GTCTTGGTCTTGCCTGTTTTCTGAACCGGTCCAATTCACCTTTGGGGAGA
GATATAGATTGTTGGTAAAACACGCTGCCCAATTCCAAGCGAACCGCGCA
TTCTCCCTAATGCTTCGTTCGACATTCATTATTAATAGCACCCCCGAACT
GAATAGTGCGAGATAGAGGTGCTATTTTGCCTCTCATGATATGATGGATG
CTCCCCCTCCGGTCTTCACCCCAAACAGGGCAATGGATCGCCTCCCTCAT
CGCTATTGTCATCGGCTGCGTTGTTTTGTTCCAGTTTAACAAATGCGCAT
ATACAGCGGCTGCGTTTTTGTACCCGATCGCTATGATTTTTGATATCATA
TCGGTCCTCTTCTGGTGAGTTGATCGGACATCAGCACCACACAGCGTTTT
TCTGGGGCGAATTGTCCGTGTTTTGGGTGCCTCTATAGCGAGCTATCCTC
CCGTCCCTTAGGTTGCCGGCATAGCAGCAAGATTTCCAACCACCGGAAAA
TTCATCGAACTTTTGACAGCCTCTGATAGGTCGGCTCCGAGCCTTTCGAA
CAATCTGCCGAAGATTGCGTTTACATGCCAACGCTCATGACCATGTTCCT
ATAGCAACCCCCGTCCCCTCCCGTCCCCTGCTCTCTCTTTGTCTTAGTAA
CCTTTGCCACGCATCCACTGATGATTCTCCTCCAGGATAATGTGTACCGA
AACCATCATGGACTACATTGCCGACGATGACATCAGCGAGGATAAAGCCG
AGACATCCATCAAGCTGTTGTCTACCGCCCCTGGCCTTGGGGCTGTGTGT
CTCCTTCTTGGAACCATCGTCACCTGTGCGGCCACCCGCAACTGGGAAAA
AAGCGGTGCTGCCGATGCGGTGGCCGTTGTCGAGTGCAGG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig8490:20545..21484-

>mRNA_A-nodosum_M_contig8490.2.1 ID=mRNA_A-nodosum_M_contig8490.2.1|Name=mRNA_A-nodosum_M_contig8490.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=372bp|location=Sequence derived from alignment at A-nodosum_M_contig8490:20545..21484- (Ascophyllum nodosum dioecious)
ATGGCTCTCTTCTTCGGCAATTTTTTCTGGGGGCAATGGATCGCCTCCCT
CATCGCTATTGTCATCGGCTGCGTTGTTTTGTTCCAGTTTAACAAATGCG
CATATACAGCGGCTGCGTTTTTGTACCCGATCGCTATGATTTTTGATATC
ATATCGGTCCTCTTCTGGATAATGTGTACCGAAACCATCATGGACTACAT
TGCCGACGATGACATCAGCGAGGATAAAGCCGAGACATCCATCAAGCTGT
TGTCTACCGCCCCTGGCCTTGGGGCTGTGTGTCTCCTTCTTGGAACCATC
GTCACCTGTGCGGCCACCCGCAACTGGGAAAAAAGCGGTGCTGCCGATGC
GGTGGCCGTTGTCGAGTGCAGG
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