mRNA_A-nodosum_M_contig8482.3.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig8482.3.1
Unique NamemRNA_A-nodosum_M_contig8482.3.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8482.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8482contigA-nodosum_M_contig8482:3502..4121 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size210
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size126
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870223.588698-UTR-A-nodosum_M_contig8482:3501..35591680870223.588698-UTR-A-nodosum_M_contig8482:3501..3559Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig8482 3502..3559 -
1680870223.632816-UTR-A-nodosum_M_contig8482:4095..41211680870223.632816-UTR-A-nodosum_M_contig8482:4095..4121Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig8482 4096..4121 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870223.6071444-CDS-A-nodosum_M_contig8482:3559..35791680870223.6071444-CDS-A-nodosum_M_contig8482:3559..3579Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8482 3560..3579 -
1680870223.6191354-CDS-A-nodosum_M_contig8482:3989..40951680870223.6191354-CDS-A-nodosum_M_contig8482:3989..4095Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8482 3990..4095 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8482.3.1prot_A-nodosum_M_contig8482.3.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig8482 3560..4095 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig8482.3.1

>prot_A-nodosum_M_contig8482.3.1 ID=prot_A-nodosum_M_contig8482.3.1|Name=mRNA_A-nodosum_M_contig8482.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=42bp
MASAERALMCSMNFEFNIEHAYPYVYEVVETCGKKGARRSE*
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mRNA from alignment at A-nodosum_M_contig8482:3502..4121-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig8482.3.1 ID=mRNA_A-nodosum_M_contig8482.3.1|Name=mRNA_A-nodosum_M_contig8482.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=620bp|location=Sequence derived from alignment at A-nodosum_M_contig8482:3502..4121- (Ascophyllum nodosum dioecious)
AGAAGTACGAGGCCGACGCCTCAAAAATGGCCAGCGCCGAGCGGGCGCTG
ATGTGCTCGATGAATTTCGAGTTTAATATTGAGCACGCATATCCCTACGT
GTACGAGGTCGTAGAAACTTGCGGCAAGAAAGGTAAGATCATAAGATAAG
AGAAAAAGATCATTGAAATCGCGATGCGCTTCCTTTCCACGCCACGCCAC
GCCACGGCAGAGCTAATGATTCCACATTGGGGGGGGGGGGATGAAAACGC
TTTATTGCTTCGACGTATGTTGTATCCATTACGCTGGATATATAATCACA
ATATCGCATTGCTGCCGCTTGACAATGCGGCGATGACGTAAAATCCTCCC
TACTATGATGATGGATGTTGTCACACTCCTCGACGCCGTCTGAAAAGGCT
GGCTGAAGGCGAAAGAGAAGTTCGCCGCGGTGAAAGGAGCAATTCACCTG
CTCAACCAGAGGTGCGTCACAACTCAAGGATGGGTTTCCTAGTATTGGAA
GAATGGGAGATGGGGGGGGTGGTGTAGGTTGTGATTTTGTAGGTGCACGC
CGCAGTGAGTGAGGGGATGAGTGGAGATGGTCCAGGTAAAGGTCCAGGGG
AGCAGGAGACACACCGGAAT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig8482:3502..4121-

>mRNA_A-nodosum_M_contig8482.3.1 ID=mRNA_A-nodosum_M_contig8482.3.1|Name=mRNA_A-nodosum_M_contig8482.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=126bp|location=Sequence derived from alignment at A-nodosum_M_contig8482:3502..4121- (Ascophyllum nodosum dioecious)
ATGGCCAGCGCCGAGCGGGCGCTGATGTGCTCGATGAATTTCGAGTTTAA
TATTGAGCACGCATATCCCTACGTGTACGAGGTCGTAGAAACTTGCGGCA
AGAAAGGTGCACGCCGCAGTGAGTGA
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