mRNA_A-nodosum_M_contig8482.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig8482.2.1
Unique NamemRNA_A-nodosum_M_contig8482.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig8482.2.1 vs. uniprot
Match: A0A6H5JJ90_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ90_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 5.450e-6
Identity = 25/51 (49.02%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:    1 SLRGTMCLEYPPSYRARLAVYMALLCNGIAAPADTEENWSLAMEFGEEQLL 153
            SLRGT+CLEYPP++RARL  Y++LL N I+ P      W+  +EF + + L
Sbjct:   41 SLRGTLCLEYPPTFRARLVTYLSLLVNNISPPPG---GWAEMIEFEDHRQL 88
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BLAST of mRNA_A-nodosum_M_contig8482.2.1 vs. uniprot
Match: D7FIA6_ECTSI (Similar to cyclin T2 isoform b isoform 9 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIA6_ECTSI)

HSP 1 Score: 54.7 bits (130), Expect = 5.710e-6
Identity = 25/51 (49.02%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:    1 SLRGTMCLEYPPSYRARLAVYMALLCNGIAAPADTEENWSLAMEFGEEQLL 153
            SLRGT+CLEYPP++RARL  Y++LL N I+ P      W+  +EF + + L
Sbjct:  219 SLRGTLCLEYPPTFRARLVTYLSLLVNNISPPPG---GWAEMIEFEDHRRL 266
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BLAST of mRNA_A-nodosum_M_contig8482.2.1 vs. uniprot
Match: D7FVH4_ECTSI (Si:dkey-18f23.10 protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVH4_ECTSI)

HSP 1 Score: 52.4 bits (124), Expect = 3.750e-5
Identity = 23/45 (51.11%), Postives = 32/45 (71.11%), Query Frame = 1 
Query:    1 SLRGTMCLEYPPSYRARLAVYMALLCNGIAAPADTEENWSLAMEF 135
            SL+ TMCLEYPP++RARLA Y++LL N +  P   E  W+  ++F
Sbjct:  228 SLKWTMCLEYPPTFRARLATYLSLLVNNVPPPQSGE--WTEVLQF 270
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BLAST of mRNA_A-nodosum_M_contig8482.2.1 vs. uniprot
Match: A0A6H5J7M3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7M3_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 4.470e-5
Identity = 23/45 (51.11%), Postives = 32/45 (71.11%), Query Frame = 1 
Query:    1 SLRGTMCLEYPPSYRARLAVYMALLCNGIAAPADTEENWSLAMEF 135
            SL+ TMCLEYPP++RARLA Y++LL N +  P   E  W+  ++F
Sbjct:  189 SLKWTMCLEYPPTFRARLATYLSLLVNHVRPPQSGE--WAEVLQF 231
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8482.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JJ90_9PHAE5.450e-649.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FIA6_ECTSI5.710e-649.02Similar to cyclin T2 isoform b isoform 9 n=1 Tax=E... [more]
D7FVH4_ECTSI3.750e-551.11Si:dkey-18f23.10 protein n=1 Tax=Ectocarpus silicu... [more]
A0A6H5J7M3_9PHAE4.470e-551.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8482contigA-nodosum_M_contig8482:2941..3352 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FVH4
Preferred namecit-1.2
PFAMsBTB,Cyclin_C,Cyclin_N
Model size412
Max annot lvl2759|Eukaryota
KEGG koko:K15188
KEGG Pathwayko05202,map05202
Hectar predicted targeting categoryother localisation
GOsGO:0000079,GO:0000307,GO:0001932,GO:0001934,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006355,GO:0006357,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010562,GO:0010604,GO:0010628,GO:0016538,GO:0019207,GO:0019219,GO:0019220,GO:0019222,GO:0019887,GO:0030234,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031401,GO:0032268,GO:0032270,GO:0032991,GO:0033674,GO:0042325,GO:0042327,GO:0043085,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043549,GO:0044093,GO:0044424,GO:0044464,GO:0045737,GO:0045787,GO:0045859,GO:0045860,GO:0045893,GO:0045935,GO:0045937,GO:0045944,GO:0048518,GO:0048522,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051338,GO:0051347,GO:0051726,GO:0060255,GO:0061695,GO:0065007,GO:0065009,GO:0071900,GO:0071902,GO:0080090,GO:0098772,GO:1901407,GO:1901409,GO:1902494,GO:1902554,GO:1902680,GO:1902911,GO:1903506,GO:1903508,GO:1904029,GO:1904031,GO:1990234,GO:2000112,GO:2001141
Exons1
Evalue6.9e-05
EggNOG OGsCOG5333@1|root,KOG0834@2759|Eukaryota
Descriptionpositive regulation of phosphorylation of RNA polymerase II C-terminal domain
Cds size213
COG categoryDKL
BRITEko00000,ko00001,ko03021
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870223.7456307-UTR-A-nodosum_M_contig8482:2940..31241680870223.7456307-UTR-A-nodosum_M_contig8482:2940..3124Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig8482 2941..3124 -
1680870223.7726667-UTR-A-nodosum_M_contig8482:3337..33521680870223.7726667-UTR-A-nodosum_M_contig8482:3337..3352Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig8482 3338..3352 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870223.759458-CDS-A-nodosum_M_contig8482:3124..33371680870223.759458-CDS-A-nodosum_M_contig8482:3124..3337Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8482 3125..3337 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8482.2.1prot_A-nodosum_M_contig8482.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig8482 3125..3337 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig8482.2.1

>prot_A-nodosum_M_contig8482.2.1 ID=prot_A-nodosum_M_contig8482.2.1|Name=mRNA_A-nodosum_M_contig8482.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=71bp
MCLEYPPSYRARLAVYMALLCNGIAAPADTEENWSLAMEFGEEQLLKSRL
RAPLSFLSLPPHLQHHSWYL*
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mRNA from alignment at A-nodosum_M_contig8482:2941..3352-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig8482.2.1 ID=mRNA_A-nodosum_M_contig8482.2.1|Name=mRNA_A-nodosum_M_contig8482.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=412bp|location=Sequence derived from alignment at A-nodosum_M_contig8482:2941..3352- (Ascophyllum nodosum dioecious)
AGCCTGCGGGGCACCATGTGCCTCGAGTATCCGCCCAGCTACCGGGCCAG
GCTTGCCGTGTACATGGCGCTTCTGTGCAACGGCATCGCCGCTCCAGCTG
ATACTGAGGAAAACTGGTCGCTTGCTATGGAGTTCGGAGAAGAGCAGCTT
CTAAAAAGTAGGTTACGCGCCCCCCTCTCCTTCCTTTCCCTTCCACCCCA
CCTCCAACACCATTCGTGGTATTTGTGATAGATGTAAAAACACCATCCTC
GCTTTAAGGGTACAATCGTCCGAGAGAGACCATGTCGAAACTCGGCAGAT
TAATTACCTCTCTTGTTATAATCGCGGGGTTGCTGTTTTCCCCGCGACCT
GTTCCTTAGACTCTTGTTCCCTCCCTTGCTTTGACGGGCCGATCGCGGGA
GCTGTTCCACCA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig8482:2941..3352-

>mRNA_A-nodosum_M_contig8482.2.1 ID=mRNA_A-nodosum_M_contig8482.2.1|Name=mRNA_A-nodosum_M_contig8482.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=213bp|location=Sequence derived from alignment at A-nodosum_M_contig8482:2941..3352- (Ascophyllum nodosum dioecious)
ATGTGCCTCGAGTATCCGCCCAGCTACCGGGCCAGGCTTGCCGTGTACAT
GGCGCTTCTGTGCAACGGCATCGCCGCTCCAGCTGATACTGAGGAAAACT
GGTCGCTTGCTATGGAGTTCGGAGAAGAGCAGCTTCTAAAAAGTAGGTTA
CGCGCCCCCCTCTCCTTCCTTTCCCTTCCACCCCACCTCCAACACCATTC
GTGGTATTTGTGA
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