mRNA_A-nodosum_M_contig848.27.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig848.27.1
Unique NamemRNA_A-nodosum_M_contig848.27.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig848.27.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig848contigA-nodosum_M_contig848:271154..271904 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size499
Hectar predicted targeting categoryother localisation
Exons2
Cds size393
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870221.6491659-UTR-A-nodosum_M_contig848:271153..2712581680870221.6491659-UTR-A-nodosum_M_contig848:271153..271258Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig848 271154..271258 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870221.6600919-CDS-A-nodosum_M_contig848:271258..2715741680870221.6600919-CDS-A-nodosum_M_contig848:271258..271574Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig848 271259..271574 +
1680870221.670812-CDS-A-nodosum_M_contig848:271827..2719041680870221.670812-CDS-A-nodosum_M_contig848:271827..271904Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig848 271828..271904 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig848.27.1prot_A-nodosum_M_contig848.27.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig848 271259..271904 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig848.27.1

>prot_A-nodosum_M_contig848.27.1 ID=prot_A-nodosum_M_contig848.27.1|Name=mRNA_A-nodosum_M_contig848.27.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=131bp
MAAWVRCIVTVVVQQSYHINKTETVCTLLTSILNVPLVPGVHRSRHTLLL
SEHSSDVECISDELYIITRQPSCGLYPTTQPKCLASISLAPCDRTQRHSS
YPSFKGCKHGARLGTGWFAPLLFAPLPGAPG
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mRNA from alignment at A-nodosum_M_contig848:271154..271904+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig848.27.1 ID=mRNA_A-nodosum_M_contig848.27.1|Name=mRNA_A-nodosum_M_contig848.27.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=751bp|location=Sequence derived from alignment at A-nodosum_M_contig848:271154..271904+ (Ascophyllum nodosum dioecious)
GTGGGAGAAACAATAAACGTTTGCCTTGACGGTTGTCATCCGTTCACGTG
CGGGTATCGCAAGTACAAACCGGTGAGTCTGGTATCATAAGGGGGCAACT
TCGAAATGGCGGCCTGGGTACGATGCATAGTAACAGTCGTCGTGCAGCAG
TCGTACCACATCAACAAAACTGAAACTGTGTGTACCCTACTCACGAGCAT
ACTCAATGTCCCTCTGGTACCAGGTGTACACAGATCACGGCATACATTAT
TGTTATCGGAGCATTCTTCCGATGTGGAGTGCATTTCCGATGAGTTATAC
ATCATCACCCGCCAGCCCAGCTGTGGGCTGTACCCCACCACCCAACCCAA
ATGCCTCGCCAGCATCTCACTTGCCCCATGCGACCGTACACAACGACACT
CGAGCTATCCAAGCTTTAAAGGTGTGTTCAAAAACGTCTCGGTGTTTAAG
AAAATCTGAACGCATCTAAGCCTTCTGAGCATCCACCTTCAGGGAAAAAA
ATGTCTAAAGGCTCGGTTGGGAACATCGGCTGTAGAGACAAACGAGCAGG
TCGCAAGCATTACTGCTACAGCTTTTTTGTGAGGCCTACTGTACTGAGGT
ATTGCGCTGATCATTGTTGTAGCTTACTTACGTAAGTGCACATGGAATCG
TTGCTCTGTCGTTGTTCATCACAGGTTGCAAGCACGGTGCTCGTCTGGGA
ACGGGATGGTTTGCACCGCTTTTATTTGCGCCGTTACCGGGTGCTCCAGG
A
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Coding sequence (CDS) from alignment at A-nodosum_M_contig848:271154..271904+

>mRNA_A-nodosum_M_contig848.27.1 ID=mRNA_A-nodosum_M_contig848.27.1|Name=mRNA_A-nodosum_M_contig848.27.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=393bp|location=Sequence derived from alignment at A-nodosum_M_contig848:271154..271904+ (Ascophyllum nodosum dioecious)
ATGGCGGCCTGGGTACGATGCATAGTAACAGTCGTCGTGCAGCAGTCGTA
CCACATCAACAAAACTGAAACTGTGTGTACCCTACTCACGAGCATACTCA
ATGTCCCTCTGGTACCAGGTGTACACAGATCACGGCATACATTATTGTTA
TCGGAGCATTCTTCCGATGTGGAGTGCATTTCCGATGAGTTATACATCAT
CACCCGCCAGCCCAGCTGTGGGCTGTACCCCACCACCCAACCCAAATGCC
TCGCCAGCATCTCACTTGCCCCATGCGACCGTACACAACGACACTCGAGC
TATCCAAGCTTTAAAGGTTGCAAGCACGGTGCTCGTCTGGGAACGGGATG
GTTTGCACCGCTTTTATTTGCGCCGTTACCGGGTGCTCCAGGA
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