mRNA_A-nodosum_M_contig8478.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig8478.2.1
Unique NamemRNA_A-nodosum_M_contig8478.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig8478.2.1 vs. uniprot
Match: A0A6H5LD91_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LD91_9PHAE)

HSP 1 Score: 151 bits (382), Expect = 2.070e-43
Identity = 79/140 (56.43%), Postives = 99/140 (70.71%), Query Frame = 1
Query:   37 VIDELLEGSKNGKLAHGDIKRVARQCFCSRKQVTTVWKRYKEHKDAGIAAPSLRNKRGGNSGRKGTDLEELRDKLRHIPLKNRTTQRAVAAQLGIPHTTLTDNLQKLGLHASRRYLKPLLTDGGKAARLAWALRWVRRSA 456
            ++ ELL+GS NG L+HGD+KRV      + K V+  WK Y + K+AG   P L NKR GNSG+KG D+  L++ L+ I LKNRTT R++AA LGIP +TL DNL  LGL +  R+LKPLL+D  KA RLAWALRWVR SA
Sbjct:    1 MVAELLKGSNNGALSHGDVKRVVAIYKQTPKTVSKYWKLYNQKKEAGEEDPDLHNKRKGNSGQKGLDIATLKEALQDIHLKNRTTIRSIAAALGIPKSTLFDNLNNLGLRSCSRFLKPLLSDDWKAQRLAWALRWVRSSA 140          
BLAST of mRNA_A-nodosum_M_contig8478.2.1 vs. uniprot
Match: A0A6H5L9I0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9I0_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 1.870e-32
Identity = 68/140 (48.57%), Postives = 87/140 (62.14%), Query Frame = 1
Query:    4 RKNLKENERRAVIDELLEGSKNGKLAHGDIKRVARQCFCSRKQVTTVWKRYKEHKDAGIAAPSLRNKRGGNSGRKGTDLEELRDKLRHIPLKNRTTQRAVAAQLGIPHTTLTDNLQKLGLHASRRYLKPLLTDGGKAARL 423
            RKN   +E+  VI  LL GSKNG L +G  K  A +  C  +    +W+RY     AG+++P L N+R GNSGRKG  +EELR++LR IPL +RTTQR +AA L IP TTL  NL+ LGL A    +KP LTD     +L
Sbjct:   13 RKNFNNSEKEEVIRHLLTGSKNGVLPYGAFKAAAEKFGCHWETNKRLWRRYDTQHKAGVSSPQLANRRNGNSGRKGVPIEELRERLRDIPLNDRTTQRRLAAALEIPLTTLHKNLKALGLRAHSNAIKPYLTDAENTYKL 152          
BLAST of mRNA_A-nodosum_M_contig8478.2.1 vs. uniprot
Match: A0A6H5K5M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5M0_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 2.030e-26
Identity = 61/122 (50.00%), Postives = 77/122 (63.11%), Query Frame = 1
Query:    4 RKNLKENERRAVIDELLEGSKNGKLAHGDIKRVARQCFCSRKQVTTVWKRYKEHKDAGIAAPSLRNKRGGNSGRKGTDLEELRDKLRHIPLKNRTTQRAVAAQLGIPHTTLTDNLQKLGLHA 369
            RKN    ER  VI  LL  S++G L HG  +  A +  CS K +  VW ++++ + AG  +  + N R GNSGRKG DLE+LR +LR IPL  RTTQR +AA LGIP  TL  NL+KLGL A
Sbjct:   13 RKNFNALEREEVIRHLLANSEDGVLRHGAYQEAAEKYGCSWKTIKGVWAKHEQREAAGDPSAYIGNNRKGNSGRKGIDLEDLRTRLRDIPLNERTTQRRLAAALGIPQPTLFRNLEKLGLKA 134          
BLAST of mRNA_A-nodosum_M_contig8478.2.1 vs. uniprot
Match: A0A6H5KBK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBK8_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 4.310e-25
Identity = 54/95 (56.84%), Postives = 67/95 (70.53%), Query Frame = 1
Query:  142 VWKRYKEHKDAGIAAPSLRNKRGGNSGRKGTDLEELRDKLRHIPLKNRTTQRAVAAQLGIPHTTLTDNLQKLGLHASRRYLKPLLTDGGKAARLA 426
            +W RY+  + AG+A P + N R GNSGRKG  ++ELR++LR IPL +RTTQR +AA LGI  TTL DNL+ LGL A  + LKPLLT  GK   LA
Sbjct:   20 LWVRYEAQRKAGVARPKIGNLRKGNSGRKGIPIQELRERLRDIPLNDRTTQRRLAAALGIATTTLFDNLKALGLRAHSKALKPLLTGDGKLPHLA 114          
BLAST of mRNA_A-nodosum_M_contig8478.2.1 vs. uniprot
Match: W2PHR9_PHYPN (Uncharacterized protein n=2 Tax=Phytophthora parasitica TaxID=4792 RepID=W2PHR9_PHYPN)

HSP 1 Score: 99.0 bits (245), Expect = 1.820e-21
Identity = 61/171 (35.67%), Postives = 92/171 (53.80%), Query Frame = 1
Query:   13 LKENERRAVIDELLEGSKNGKLAHGDIKRVARQCFCSRKQVTTVWKRYKEHKDAGIAAPSLRNKRGGNSGRKGTDLEELRDKLRHIPLKNRTTQRAVAAQLGIPHTTLTDNLQKLGLHASRRYLKPLLTDGGKAARLAWALRWVRRSAAGRVFDEMKGVVMVDEKGFYKFR 525
            L + ER+AVIDELL  S+NGKL  G   +VA         ++T+WKRY    +AG+     +++R  + GRK  + +ELR+KL  +P+++R  +R  AA  G+    +   ++K  L     ++KP LT   K  R+  AL ++        F+ M  VV VDEK FY  R
Sbjct:    6 LSDVERKAVIDELLRISENGKLPRGAYAKVASGVERDPTTISTIWKRYVAAVEAGVVGDEWKSRRKRHCGRKRKNRDELREKLARVPMEDRAVERRAAAAAGVSRNLVRQAVRKGMLKRRTTFIKPALTPENKLRRVEHALSFIDDRTLE--FESMHNVVHVDEKWFYSDR 174          
BLAST of mRNA_A-nodosum_M_contig8478.2.1 vs. uniprot
Match: A0A6H5KRW0_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRW0_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 3.860e-20
Identity = 51/122 (41.80%), Postives = 76/122 (62.30%), Query Frame = 1
Query:    4 RKNLKENERRAVIDELLEGSKNGKLAHGDIKRVARQCFCSRKQVTTVWKRYKEHKDAGIAAPSLRNKRGGNSGRKGTDLEELRDKLRHIPLKNRTTQRAVAAQLGIPHTTLTDNLQKLGLHA 369
            RKN   +ER  V+  LL  S++G   HG   R A +  C  + +  +W+++++ +++G  +  + N R G+SG KG D+E LR +L  IPL  RTTQR +AA LGIP +TL +NL+ LGL A
Sbjct:   13 RKNFNVSEREEVVRYLLADSEDGVRQHGSYHRAAEKYGCHWETIKRIWQKHEKREESGDPSLYIGNDRKGHSGCKGIDIENLRARLLEIPLNERTTQRRLAAALGIPKSTLHNNLKALGLRA 134          
BLAST of mRNA_A-nodosum_M_contig8478.2.1 vs. uniprot
Match: A0A6A4ZEB5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZEB5_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 1.580e-19
Identity = 65/172 (37.79%), Postives = 94/172 (54.65%), Query Frame = 1
Query:   10 NLKENERRAVIDELLEGSKNGKLAHGDIKRVARQCFCSRKQVTTVWKRYKEHKDAGIAAPSLRNKRGGNSGRK-GTDLEELRDKLRHIPLKNRTTQRAVAAQLGIPHTTL-TDNLQKLGLHASRRYLKPLLTDGGKAARLAWALRWVRRSAAGR-VFDEMKGVVMVDEKGFY 516
            NL+++ERRA+ + +LE S  G L  G I  +AR+    R  +  VWKR  E +  G  A ++ +K  GNSGRK   +  ++   +R +P   R T R+VAA + IP TTL    + +    A   +LKP LTD     RL +A+ ++R     R VF +M  +V VDEK FY
Sbjct:   28 NLRDSERRALFERMLEISSRGVLPRGAIVNLAREIGRDRATIMRVWKRGLETRKDGDGAANVASKIRGNSGRKVQRERSDIEAAIRAVPHARRRTLRSVAASVVIPLTTLHRHKMSEPRFSAKSNWLKPRLTDANIKLRLEFAMSFLRSGPGDRQVFSDMHDIVHVDEKWFY 199          
BLAST of mRNA_A-nodosum_M_contig8478.2.1 vs. uniprot
Match: A0A6H5JEL2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEL2_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 2.660e-19
Identity = 47/81 (58.02%), Postives = 58/81 (71.60%), Query Frame = 1
Query:  151 RYKEHKDAGIAAPSLRNKRGGNSGRKGTDLEELRDKLRHIPLKNRTTQRAVAAQLGIPHTTLTDNLQKLGLHASRRYLKPL 393
            RY     AG+A+P + N+R GNSGRKG  LEEL+++LR IPL +RTTQR +AA LGIP +TL  NL+ LGL A    LKPL
Sbjct:    2 RYDTQHKAGVASPQIENRRKGNSGRKGIPLEELKERLRDIPLNDRTTQRRLAAALGIPKSTLHRNLKVLGLRAHSNALKPL 82          
BLAST of mRNA_A-nodosum_M_contig8478.2.1 vs. uniprot
Match: A0A6H5KLV4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLV4_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 3.020e-19
Identity = 51/122 (41.80%), Postives = 76/122 (62.30%), Query Frame = 1
Query:    4 RKNLKENERRAVIDELLEGSKNGKLAHGDIKRVARQCFCSRKQVTTVWKRYKEHKDAGIAAPSLRNKRGGNSGRKGTDLEELRDKLRHIPLKNRTTQRAVAAQLGIPHTTLTDNLQKLGLHA 369
            RKN   +ER  V+  LL  S++G   HG   R A +  C  + +  +W+++++ +++G  +  + N R G+SG KG D+E LR +L  IPL  RTTQR +AA LGIP +TL +NL+ LGL A
Sbjct:   13 RKNFNVSEREEVVRYLLADSEDGVRQHGSYHRAAEKYGCHWETIKRIWQKHEKREESGDPSLYIGNDRKGHSGCKGIDIENLRARLLEIPLNERTTQRRLAAALGIPKSTLHNNLKALGLRA 134          
BLAST of mRNA_A-nodosum_M_contig8478.2.1 vs. uniprot
Match: A0A6H5JAZ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAZ0_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 3.790e-19
Identity = 49/81 (60.49%), Postives = 59/81 (72.84%), Query Frame = 1
Query:  154 YKEHKDAGIAAPSLRNKRGGNSGRKGTDLEELRDKLRHIPLKNRTTQRAVAAQLGIPHTTLTDNLQKLGLHASRRYLKPLL 396
            Y +HK AG+A+P + N+R GNSGRKG  LEELR++LR IPL NRTTQR +AA LGIP +TL  N + LGL A    LKP L
Sbjct:    4 YTQHK-AGVASPKIENRRMGNSGRKGIPLEELRERLRDIPL-NRTTQRRLAAALGIPKSTLHRNPKALGLRAHSNALKPYL 82          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8478.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LD91_9PHAE2.070e-4356.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L9I0_9PHAE1.870e-3248.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5M0_9PHAE2.030e-2650.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBK8_9PHAE4.310e-2556.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W2PHR9_PHYPN1.820e-2135.67Uncharacterized protein n=2 Tax=Phytophthora paras... [more]
A0A6H5KRW0_9PHAE3.860e-2041.80Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6A4ZEB5_9STRA1.580e-1937.79Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A6H5JEL2_9PHAE2.660e-1958.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLV4_9PHAE3.020e-1941.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAZ0_9PHAE3.790e-1960.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8478contigA-nodosum_M_contig8478:12396..12923 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog164328.Phyra75254
Model size528
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.29e-18
EggNOG OGs2CTHC@1|root,2RGBC@2759|Eukaryota,3QHYT@4776|Peronosporales
Cds size528
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870221.473909-CDS-A-nodosum_M_contig8478:12395..129231680870221.473909-CDS-A-nodosum_M_contig8478:12395..12923Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8478 12396..12923 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8478.2.1prot_A-nodosum_M_contig8478.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig8478 12396..12923 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig8478.2.1

>prot_A-nodosum_M_contig8478.2.1 ID=prot_A-nodosum_M_contig8478.2.1|Name=mRNA_A-nodosum_M_contig8478.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=176bp
SRKNLKENERRAVIDELLEGSKNGKLAHGDIKRVARQCFCSRKQVTTVWK
RYKEHKDAGIAAPSLRNKRGGNSGRKGTDLEELRDKLRHIPLKNRTTQRA
VAAQLGIPHTTLTDNLQKLGLHASRRYLKPLLTDGGKAARLAWALRWVRR
SAAGRVFDEMKGVVMVDEKGFYKFR*
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mRNA from alignment at A-nodosum_M_contig8478:12396..12923+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig8478.2.1 ID=mRNA_A-nodosum_M_contig8478.2.1|Name=mRNA_A-nodosum_M_contig8478.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=528bp|location=Sequence derived from alignment at A-nodosum_M_contig8478:12396..12923+ (Ascophyllum nodosum dioecious)
AGCAGAAAGAATCTGAAAGAAAATGAGAGACGCGCTGTGATCGACGAGCT CCTCGAGGGCAGTAAAAATGGCAAGTTGGCCCATGGGGACATCAAGCGAG TCGCGCGGCAGTGTTTTTGCTCGCGCAAGCAAGTTACGACCGTGTGGAAA CGATACAAGGAGCACAAGGACGCTGGCATCGCTGCCCCAAGCTTGCGCAA TAAACGTGGTGGAAATTCGGGCAGGAAAGGAACCGACTTGGAAGAGCTCC GCGATAAATTGCGGCACATCCCCCTCAAGAATCGAACTACCCAGCGAGCT GTTGCTGCACAGCTGGGGATCCCGCACACGACCCTGACGGACAACCTCCA GAAACTTGGCCTGCACGCTTCCCGACGTTACCTCAAGCCACTCCTCACTG ATGGTGGCAAAGCTGCCAGACTGGCTTGGGCGCTGCGGTGGGTGCGACGG TCCGCTGCCGGCAGGGTGTTTGACGAGATGAAGGGAGTCGTCATGGTCGA CGAGAAGGGGTTCTACAAGTTCCGATAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig8478:12396..12923+

>mRNA_A-nodosum_M_contig8478.2.1 ID=mRNA_A-nodosum_M_contig8478.2.1|Name=mRNA_A-nodosum_M_contig8478.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=528bp|location=Sequence derived from alignment at A-nodosum_M_contig8478:12396..12923+ (Ascophyllum nodosum dioecious)
AGCAGAAAGAATCTGAAAGAAAATGAGAGACGCGCTGTGATCGACGAGCT
CCTCGAGGGCAGTAAAAATGGCAAGTTGGCCCATGGGGACATCAAGCGAG
TCGCGCGGCAGTGTTTTTGCTCGCGCAAGCAAGTTACGACCGTGTGGAAA
CGATACAAGGAGCACAAGGACGCTGGCATCGCTGCCCCAAGCTTGCGCAA
TAAACGTGGTGGAAATTCGGGCAGGAAAGGAACCGACTTGGAAGAGCTCC
GCGATAAATTGCGGCACATCCCCCTCAAGAATCGAACTACCCAGCGAGCT
GTTGCTGCACAGCTGGGGATCCCGCACACGACCCTGACGGACAACCTCCA
GAAACTTGGCCTGCACGCTTCCCGACGTTACCTCAAGCCACTCCTCACTG
ATGGTGGCAAAGCTGCCAGACTGGCTTGGGCGCTGCGGTGGGTGCGACGG
TCCGCTGCCGGCAGGGTGTTTGACGAGATGAAGGGAGTCGTCATGGTCGA
CGAGAAGGGGTTCTACAAGTTCCGATAG
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