mRNA_A-nodosum_M_contig847.8.3 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig847.8.3 vs. uniprot
Match: D7FYS2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYS2_ECTSI) HSP 1 Score: 360 bits (923), Expect = 3.400e-103 Identity = 207/435 (47.59%), Postives = 267/435 (61.38%), Query Frame = 3
Query: 2328 VKAELRDFPGTRHCRSRLKKIFCHEWVQQEYYNGVSTGQVDPTMPQMEFLRRRMGSGRLYALLLEDSKDYLRPGVYTDTDVELVGIHFAHALIAQEAEKVHAMQMPRVDADGAAGGSNKWKPDVGVSDSRAATAAALGQDLPSGVMRAAGGNGGSSCSKAGSHGV-SWAERLRNFQIDVPTT-TYDLTSSDETEGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVEWDGQGVDASVVIQHRRRFDARCCAYEALINASRNDKTSIFMERAQRLHQDHAAIITAKRATLEGTLENVRSQLLGREDQLHQLRMEQSHINPMDGASIAAFADNEAAILSRITEKKLQMSMILEEASKVVDWDRTAELARREAMQRAADVHGHGHGGAFTAESAREKNDLVQAMMSQKATILLLTTLCKIPGPWLAPNGHVR 3626
+K L +F GTR+ RSRLK+ HEW +QEY G++ GQVD M +MEF+RRR+ G LYALL ++S+DYLR G +TD DVEL+G+ FA A ++E A P+ D SG AA + A GV SWA+RLR+FQID+P + TYD +SD + G WDG GVDA+ VI+HRR+FD RC AYEAL ASRNDKT+ +E+ RL QDHAAI+ AKR TLEGTL+NVR QL GREDQL + MEQ +NP+D +A ++EAAI++R+ EKK+QM+MI++EA+KVV W++TAELARREAM AAD+HGHG G F SA+E+N+LVQ+MMSQK I+LL+T CK+ GPWLAP+G+VR
Sbjct: 1 MKTVLPEFQGTRYARSRLKQTLAHEWARQEYRTGIALGQVDRGMTEMEFVRRRVEGGSLYALLEQESRDYLRVGPFTDADVELLGMSFAQAQASKELPPPAAA--PKPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSGKDAAA-----AKAGAAAEGGVASWADRLRDFQIDIPASATYDGLASDSSRG---------GGAADRTDGQVVAEAAQKGGSQQEDDASAWDGIGVDAATVIRHRRQFDLRCRAYEALNTASRNDKTNGLLEKTHRLRQDHAAIVAAKRVTLEGTLQNVRQQLNGREDQLRHVHMEQRGVNPLDTTVVAGLNESEAAIMTRVAEKKVQMAMIIDEANKVVQWEQTAELARREAMHHAADMHGHG--GGFAPGSAKERNELVQSMMSQKVNIMLLSTFCKLRGPWLAPSGYVR 417
BLAST of mRNA_A-nodosum_M_contig847.8.3 vs. uniprot
Match: D7FYS1_ECTSI (PDZ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYS1_ECTSI) HSP 1 Score: 139 bits (350), Expect = 2.010e-34 Identity = 68/80 (85.00%), Postives = 75/80 (93.75%), Query Frame = 3
Query: 603 MVLKHAQVVGEKKTKRGAYLAGLAEGPSVAQDLGLTPKDRLISVEGLDVKTLPFDRIVALIRKASFPLTLIWSRQRKDGV 842
MVLKHAQV GE++ KRGAYLAGLAEGPS+AQDLGL+PKDRLI VEGLDVKTLPFDRIV LIRKA+FPLTL+WSRQRK G+
Sbjct: 1 MVLKHAQVFGEERLKRGAYLAGLAEGPSLAQDLGLSPKDRLILVEGLDVKTLPFDRIVGLIRKATFPLTLVWSRQRKAGI 80
BLAST of mRNA_A-nodosum_M_contig847.8.3 vs. uniprot
Match: A0A6H5KV99_9PHAE (PDZ domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV99_9PHAE) HSP 1 Score: 137 bits (344), Expect = 8.840e-34 Identity = 69/89 (77.53%), Postives = 74/89 (83.15%), Query Frame = 3
Query: 507 PVAAEGSPRASSQQWDVFEVVLSKPSGRQKLGMVLKHAQVVGEKKTKRGAYLAGLAEGPSVAQDLGLTPKDRLISVEGLDVKTLPFDRI 773
P + QQWD FEVVLSKPSG QKLGMVLKHAQV GE++ KRGAYLAGLAEGPS+AQDLGL+PKDRLI VEGLDVKTLPFDRI
Sbjct: 10 PAQRSSGQQPQQQQWDRFEVVLSKPSGSQKLGMVLKHAQVCGEERLKRGAYLAGLAEGPSLAQDLGLSPKDRLILVEGLDVKTLPFDRI 98 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig847.8.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig847.8.3 >prot_A-nodosum_M_contig847.8.3 ID=prot_A-nodosum_M_contig847.8.3|Name=mRNA_A-nodosum_M_contig847.8.3|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=1480bp MEAPATATPSPRPVAAEGSPRASSQQWDVFEVVLSKPSGRQKLGMVLKHAback to top mRNA from alignment at A-nodosum_M_contig847:103476..161577- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig847.8.3 ID=mRNA_A-nodosum_M_contig847.8.3|Name=mRNA_A-nodosum_M_contig847.8.3|organism=Ascophyllum nodosum dioecious|type=mRNA|length=58102bp|location=Sequence derived from alignment at A-nodosum_M_contig847:103476..161577- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig847:103476..161577- >mRNA_A-nodosum_M_contig847.8.3 ID=mRNA_A-nodosum_M_contig847.8.3|Name=mRNA_A-nodosum_M_contig847.8.3|organism=Ascophyllum nodosum dioecious|type=CDS|length=4440bp|location=Sequence derived from alignment at A-nodosum_M_contig847:103476..161577- (Ascophyllum nodosum dioecious)back to top |