mRNA_A-nodosum_M_contig847.29.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig847.29.1
Unique NamemRNA_A-nodosum_M_contig847.29.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig847.29.1 vs. uniprot
Match: D7FYS4_ECTSI (40S ribosomal protein S14 n=3 Tax=Sar TaxID=2698737 RepID=D7FYS4_ECTSI)

HSP 1 Score: 281 bits (719), Expect = 1.260e-95
Identity = 145/148 (97.97%), Postives = 145/148 (97.97%), Query Frame = 1 
Query:    1 KKNTEAKVEERVTLGPKVAEGENVFGVAHIFASFNDTFVHITDLSGRETMVRVTGGMKVKADRDEASPYAAMLAAQDVAARCKELGITALHIKMRATGGNKTKTPGPGAQSALRALARAGMKIGRIEDVTPIPTDCTRRKGGRRGRRL 444
            KK  E KVEERVTLGPKVAEGENVFGVAHIFASFNDTFVHITDLSGRETMVRVTGGMKVKADRDEASPYAAMLAAQDVAARCKELGITALHIKMRATGGNKTKTPGPGAQSALRALARAGMKIGRIEDVTPIPTDCTRRKGGRRGRRL
Sbjct:    4 KKTKEDKVEERVTLGPKVAEGENVFGVAHIFASFNDTFVHITDLSGRETMVRVTGGMKVKADRDEASPYAAMLAAQDVAARCKELGITALHIKMRATGGNKTKTPGPGAQSALRALARAGMKIGRIEDVTPIPTDCTRRKGGRRGRRL 151
[Close]
BLAST of mRNA_A-nodosum_M_contig847.29.1 vs. uniprot
Match: M1XK24_9METZ (40S ribosomal protein S14 n=1 Tax=Sycon ciliatum TaxID=27933 RepID=M1XK24_9METZ)

HSP 1 Score: 258 bits (659), Expect = 1.960e-86
Identity = 130/148 (87.84%), Postives = 139/148 (93.92%), Query Frame = 1 
Query:    1 KKNTEAKVEERVTLGPKVAEGENVFGVAHIFASFNDTFVHITDLSGRETMVRVTGGMKVKADRDEASPYAAMLAAQDVAARCKELGITALHIKMRATGGNKTKTPGPGAQSALRALARAGMKIGRIEDVTPIPTDCTRRKGGRRGRRL 444
            +K  EAK EE + LGP+V EGENVFGVAHIFASFNDTFVHITDLSG+ET+ RVTGGMKVKADRDEASPYAAMLAAQDVA RCKE+GITALHIK+RATGGN+TKTPGPGAQSALRALARAGMKIGRIEDVTPIP+D TRRKGGRRGRRL
Sbjct:    7 RKGKEAKKEENIVLGPQVGEGENVFGVAHIFASFNDTFVHITDLSGKETITRVTGGMKVKADRDEASPYAAMLAAQDVAVRCKEVGITALHIKLRATGGNRTKTPGPGAQSALRALARAGMKIGRIEDVTPIPSDSTRRKGGRRGRRL 154
[Close]
BLAST of mRNA_A-nodosum_M_contig847.29.1 vs. uniprot
Match: A0A7S2HU48_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HU48_9STRA)

HSP 1 Score: 258 bits (660), Expect = 2.290e-86
Identity = 129/147 (87.76%), Postives = 140/147 (95.24%), Query Frame = 1 
Query:    4 KNTEAKVEERVTLGPKVAEGENVFGVAHIFASFNDTFVHITDLSGRETMVRVTGGMKVKADRDEASPYAAMLAAQDVAARCKELGITALHIKMRATGGNKTKTPGPGAQSALRALARAGMKIGRIEDVTPIPTDCTRRKGGRRGRRL 444
            K+ E  VEE  T+G KVA+GEN+FGVAHIFASFNDTFVH+TDLSGRET+VRVTGGMKVKADRDEASPYAAMLAAQDVAA+CK++GITALHIKMRATGGNKTKTPGPGAQSALRALARAG+KIGRIEDVTPIP+DCTRRK GRRGRRL
Sbjct:   23 KDAEQPVEEMTTIGAKVADGENLFGVAHIFASFNDTFVHVTDLSGRETIVRVTGGMKVKADRDEASPYAAMLAAQDVAAKCKDIGITALHIKMRATGGNKTKTPGPGAQSALRALARAGLKIGRIEDVTPIPSDCTRRKSGRRGRRL 169
[Close]
BLAST of mRNA_A-nodosum_M_contig847.29.1 vs. uniprot
Match: A0A1D1Z556_9ARAE (40S ribosomal protein S14-3 n=2 Tax=Viridiplantae TaxID=33090 RepID=A0A1D1Z556_9ARAE)

HSP 1 Score: 256 bits (655), Expect = 6.970e-86
Identity = 129/143 (90.21%), Postives = 138/143 (96.50%), Query Frame = 1 
Query:   16 AKVEERVTLGPKVAEGENVFGVAHIFASFNDTFVHITDLSGRETMVRVTGGMKVKADRDEASPYAAMLAAQDVAARCKELGITALHIKMRATGGNKTKTPGPGAQSALRALARAGMKIGRIEDVTPIPTDCTRRKGGRRGRRL 444
            AKVEE ++LGP+V +GE VFGVAHIFASFNDTFVH+TDLSGRET+VRVTGGMKVKADRDE+SPYAAMLAAQDVAA+CKELGITALHIK+RATGGN TKTPGPGAQSALRALARAGMKIGRIEDVTPIPTD TRRKGGRRGRRL
Sbjct:    8 AKVEENISLGPQVRDGEEVFGVAHIFASFNDTFVHVTDLSGRETIVRVTGGMKVKADRDESSPYAAMLAAQDVAAKCKELGITALHIKLRATGGNGTKTPGPGAQSALRALARAGMKIGRIEDVTPIPTDSTRRKGGRRGRRL 150
[Close]
BLAST of mRNA_A-nodosum_M_contig847.29.1 vs. uniprot
Match: K3YAJ9_SETIT (Uncharacterized protein n=7 Tax=Magnoliopsida TaxID=3398 RepID=K3YAJ9_SETIT)

HSP 1 Score: 256 bits (655), Expect = 7.200e-86
Identity = 130/148 (87.84%), Postives = 137/148 (92.57%), Query Frame = 1 
Query:    1 KKNTEAKVEERVTLGPKVAEGENVFGVAHIFASFNDTFVHITDLSGRETMVRVTGGMKVKADRDEASPYAAMLAAQDVAARCKELGITALHIKMRATGGNKTKTPGPGAQSALRALARAGMKIGRIEDVTPIPTDCTRRKGGRRGRRL 444
            +K T    EE VTLGP V EGE VFGVAHIFASFNDTF+HITDLSGRETMVR+TGGMKVKADRDE+SPYAAMLAAQDVA RCKELGITALHIK+RATGGNKTKTPGPGAQSALRALAR+GMKIGRIEDVTP+PTD TRRKGGRRGRRL
Sbjct:    4 RKKTREPKEENVTLGPAVREGEYVFGVAHIFASFNDTFIHITDLSGRETMVRITGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPVPTDSTRRKGGRRGRRL 151
[Close]
BLAST of mRNA_A-nodosum_M_contig847.29.1 vs. uniprot
Match: A0A1U8B504_NELNU (40S ribosomal protein S14-like n=10 Tax=Mesangiospermae TaxID=1437183 RepID=A0A1U8B504_NELNU)

HSP 1 Score: 256 bits (654), Expect = 9.890e-86
Identity = 127/140 (90.71%), Postives = 135/140 (96.43%), Query Frame = 1 
Query:   25 EERVTLGPKVAEGENVFGVAHIFASFNDTFVHITDLSGRETMVRVTGGMKVKADRDEASPYAAMLAAQDVAARCKELGITALHIKMRATGGNKTKTPGPGAQSALRALARAGMKIGRIEDVTPIPTDCTRRKGGRRGRRL 444
            EE VTLGP V EGENVFGVAHIFASFNDTF+H+TDLSGRET+VR+TGGMKVKADRDE+SPYAAMLAAQDVA RCKELGITALHIK+RATGGNKTKTPGPGAQSALRALAR+GMK+GRIEDVTPIPTD TRRKGGRRGRRL
Sbjct:   11 EENVTLGPTVREGENVFGVAHIFASFNDTFIHVTDLSGRETIVRITGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKVGRIEDVTPIPTDSTRRKGGRRGRRL 150
[Close]
BLAST of mRNA_A-nodosum_M_contig847.29.1 vs. uniprot
Match: A0A835RMY5_VANPL (Uncharacterized protein n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835RMY5_VANPL)

HSP 1 Score: 257 bits (656), Expect = 1.960e-85
Identity = 128/140 (91.43%), Postives = 136/140 (97.14%), Query Frame = 1 
Query:   25 EERVTLGPKVAEGENVFGVAHIFASFNDTFVHITDLSGRETMVRVTGGMKVKADRDEASPYAAMLAAQDVAARCKELGITALHIKMRATGGNKTKTPGPGAQSALRALARAGMKIGRIEDVTPIPTDCTRRKGGRRGRRL 444
            EE VTLGPKV EGE+VFGVAHIFASFNDTF+H+TDLSGRET+VR+TGGMKVKADRDE+SPYAAMLAAQDVA RCKELGITALHIK+RATGGNKTKTPGPGAQSALRALAR+GMKIGRIEDVTPIPTD TRRKGGRRGRRL
Sbjct:   52 EETVTLGPKVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRRKGGRRGRRL 191
[Close]
BLAST of mRNA_A-nodosum_M_contig847.29.1 vs. uniprot
Match: A9P8E9_POPTR (Uncharacterized protein n=8 Tax=fabids TaxID=91835 RepID=A9P8E9_POPTR)

HSP 1 Score: 255 bits (652), Expect = 2.000e-85
Identity = 128/148 (86.49%), Postives = 138/148 (93.24%), Query Frame = 1 
Query:    1 KKNTEAKVEERVTLGPKVAEGENVFGVAHIFASFNDTFVHITDLSGRETMVRVTGGMKVKADRDEASPYAAMLAAQDVAARCKELGITALHIKMRATGGNKTKTPGPGAQSALRALARAGMKIGRIEDVTPIPTDCTRRKGGRRGRRL 444
            K+ T    EE VTLGP V EGE+VFGVAHIFASFNDTF+H+TDLSGRET+VR+TGGMKVKADRDE+SPYAAMLAAQDV+ RCKELGITALHIK+RATGGNKTKTPGPGAQSALRALAR+GMKIGRIEDVTPIPTD TRRKGGRRGRRL
Sbjct:    3 KRRTREPKEENVTLGPTVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRRKGGRRGRRL 150
[Close]
BLAST of mRNA_A-nodosum_M_contig847.29.1 vs. uniprot
Match: A0A0K9PCU6_ZOSMR (30S ribosomal protein S11 n=5 Tax=Mesangiospermae TaxID=1437183 RepID=A0A0K9PCU6_ZOSMR)

HSP 1 Score: 255 bits (652), Expect = 2.000e-85
Identity = 129/148 (87.16%), Postives = 140/148 (94.59%), Query Frame = 1 
Query:    1 KKNTEAKVEERVTLGPKVAEGENVFGVAHIFASFNDTFVHITDLSGRETMVRVTGGMKVKADRDEASPYAAMLAAQDVAARCKELGITALHIKMRATGGNKTKTPGPGAQSALRALARAGMKIGRIEDVTPIPTDCTRRKGGRRGRRL 444
            +KN E K EE VTLGP V +GE+VFGVAHIFASFNDTF+H+TDLSGRET+VR+TGGMKVKADRDE+SPYAAMLAAQDV+ RCKELGITALHIK+RATGGNKTKTPGPGAQSALRALAR+GMKIGRIEDVTPIPTD TRRKGGRRGRRL
Sbjct:    4 RKNREPK-EENVTLGPSVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSVRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRRKGGRRGRRL 150
[Close]
BLAST of mRNA_A-nodosum_M_contig847.29.1 vs. uniprot
Match: M7Z6I6_TRIUA (40S ribosomal protein S14 n=4 Tax=Triticum TaxID=4564 RepID=M7Z6I6_TRIUA)

HSP 1 Score: 255 bits (652), Expect = 2.060e-85
Identity = 127/148 (85.81%), Postives = 138/148 (93.24%), Query Frame = 1 
Query:    1 KKNTEAKVEERVTLGPKVAEGENVFGVAHIFASFNDTFVHITDLSGRETMVRVTGGMKVKADRDEASPYAAMLAAQDVAARCKELGITALHIKMRATGGNKTKTPGPGAQSALRALARAGMKIGRIEDVTPIPTDCTRRKGGRRGRRL 444
            K+ T    EE VTLGP V EGE+VFGVAHIFASFNDTF+H+TDLSGRET+VR+TGGMKVKADRDE+SPYAAMLA+QDVA RCKELGITALHIK+RATGGNKTKTPGPGAQSALRALAR+GMKIGRIEDVTP+PTD TRRKGGRRGRRL
Sbjct:    4 KRKTREPKEENVTLGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLASQDVATRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPVPTDSTRRKGGRRGRRL 151
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig847.29.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYS4_ECTSI1.260e-9597.9740S ribosomal protein S14 n=3 Tax=Sar TaxID=269873... [more]
M1XK24_9METZ1.960e-8687.8440S ribosomal protein S14 n=1 Tax=Sycon ciliatum T... [more]
A0A7S2HU48_9STRA2.290e-8687.76Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A1D1Z556_9ARAE6.970e-8690.2140S ribosomal protein S14-3 n=2 Tax=Viridiplantae ... [more]
K3YAJ9_SETIT7.200e-8687.84Uncharacterized protein n=7 Tax=Magnoliopsida TaxI... [more]
A0A1U8B504_NELNU9.890e-8690.7140S ribosomal protein S14-like n=10 Tax=Mesangiosp... [more]
A0A835RMY5_VANPL1.960e-8591.43Uncharacterized protein n=1 Tax=Vanilla planifolia... [more]
A9P8E9_POPTR2.000e-8586.49Uncharacterized protein n=8 Tax=fabids TaxID=91835... [more]
A0A0K9PCU6_ZOSMR2.000e-8587.1630S ribosomal protein S11 n=5 Tax=Mesangiospermae ... [more]
M7Z6I6_TRIUA2.060e-8585.8140S ribosomal protein S14 n=4 Tax=Triticum TaxID=4... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig847contigA-nodosum_M_contig847:304671..307522 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FYS4
Preferred nameRPS14
PFAMsRibosomal_S11
Model size447
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC02753
KEGG koko:K01000,ko:K02955
KEGG TC9.B.146
KEGG ReactionR05629,R05630
KEGG Pathwayko00550,ko01100,ko01502,ko03010,map00550,map01100,map01502,map03010
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
GOsGO:0000028,GO:0000122,GO:0000184,GO:0000462,GO:0000956,GO:0002181,GO:0002262,GO:0002376,GO:0002520,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0005911,GO:0006139,GO:0006355,GO:0006357,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006417,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006996,GO:0007275,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009506,GO:0009507,GO:0009536,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0015031,GO:0015833,GO:0015935,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0019219,GO:0019222,GO:0019439,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030054,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0030490,GO:0030684,GO:0030686,GO:0031090,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032040,GO:0032268,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034101,GO:0034248,GO:0034470,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0042254,GO:0042255,GO:0042274,GO:0042592,GO:0042788,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045182,GO:0045184,GO:0045892,GO:0045934,GO:0046483,GO:0046700,GO:0046907,GO:0048027,GO:0048513,GO:0048519,GO:0048523,GO:0048534,GO:0048731,GO:0048856,GO:0048869,GO:0048872,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051246,GO:0051252,GO:0051253,GO:0051641,GO:0051649,GO:0055044,GO:0060255,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070181,GO:0070727,GO:0070925,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0080090,GO:0090150,GO:0090304,GO:0097159,GO:0098588,GO:0098805,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1902679,GO:1903506,GO:1903507,GO:1990904,GO:2000112,GO:2000113,GO:2001141
Exons4
Evalue2.06e-96
EggNOG OGsCOG0100@1|root,KOG0407@2759|Eukaryota
Ec32 ortholog descriptionRibosomal protein S11
Ec32 orthologEc-19_002330.1
EC2.7.8.13
DescriptionmRNA 5'-UTR binding
Cds size447
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko01011,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870221.2423286-CDS-A-nodosum_M_contig847:304670..3047871680870221.2423286-CDS-A-nodosum_M_contig847:304670..304787Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig847 304671..304787 +
1680870221.2615783-CDS-A-nodosum_M_contig847:306399..3065311680870221.2615783-CDS-A-nodosum_M_contig847:306399..306531Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig847 306400..306531 +
1680870221.2716756-CDS-A-nodosum_M_contig847:306951..3070681680870221.2716756-CDS-A-nodosum_M_contig847:306951..307068Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig847 306952..307068 +
1680870221.2818418-CDS-A-nodosum_M_contig847:307441..3075221680870221.2818418-CDS-A-nodosum_M_contig847:307441..307522Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig847 307442..307522 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig847.29.1prot_A-nodosum_M_contig847.29.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig847 304671..307522 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig847.29.1

>prot_A-nodosum_M_contig847.29.1 ID=prot_A-nodosum_M_contig847.29.1|Name=mRNA_A-nodosum_M_contig847.29.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=149bp
KKNTEAKVEERVTLGPKVAEGENVFGVAHIFASFNDTFVHITDLSGRETM
VRVTGGMKVKADRDEASPYAAMLAAQDVAARCKELGITALHIKMRATGGN
KTKTPGPGAQSALRALARAGMKIGRIEDVTPIPTDCTRRKGGRRGRRL*
back to top

mRNA from alignment at A-nodosum_M_contig847:304671..307522+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig847.29.1 ID=mRNA_A-nodosum_M_contig847.29.1|Name=mRNA_A-nodosum_M_contig847.29.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2852bp|location=Sequence derived from alignment at A-nodosum_M_contig847:304671..307522+ (Ascophyllum nodosum dioecious)
AAAAAGAACACCGAGGCGAAGGTGGAAGAGAGGGTTACCCTCGGTCCCAA
GGTGGCGGAGGGGGAGAACGTGTTCGGCGTCGCGCACATCTTCGCGTCGT
TCAACGATACCTTCGTGGTGAGACATACAGACTTATTATTAATAATACTC
AGTAGTCATTATTATAGTACACTTCCATTTGGACTGCAGTAATAATACTA
TGAAGAGAAAGACTTGCACCACGGAACCATCGTACCACGTTAGAGCGTGG
CCGGCGTCGCGTATTTCCCCTCGGAGTCTGTTTAACGAGGCCTCTTTTTC
CTTAATAGAAATAAAAAACCTCATACCCCGGAGTATATATGATGTTTTTT
GTTACGGTTCGTCAAATGGGTATTAAGGGCATATAAATATCGGCAGCTTC
GCCCCTGATTGGCCAGGAACGATCGAGAAACATGCCAACACCTCTTCAGC
ACGAAAACAGATTGATCGGTTAGGAGACAGGCGTGAGTACGGGCGTTTTT
AGGAAATACAAATTTGGCATCAACAATTAGATATAAGAGACCGCTGCTGT
ACACATCGCCACATCTTCCAAACGCAAGAGTTCATAGTCATGTATCTTTC
TTCCGAAGGAAGTTTTGGACTTCAAAGGTCATGTACCGAGGTTCGGCGGC
CGACTTTTTGGTGGTTTTGTGTAAACCCGGGAATCCCACCACAAATGCCA
CAGAAAGGTGACTACGCACATTTAGTCAACTTTCTTCGGCTTCGTAGCAT
GTAGAAGGTTGTCCTCTTCAGAGGGTGCTCCTGCAGGGTTTTGGGAGGTC
TTCTGCGCATAACCGCGGTCTCTGGTCGTCAGGCTCAAGAGTGGAGAACA
CCTGCGGCTGTTCCTACTGCTGTAGGAGTACAGAAAACGGAGAACTGGCT
TGGACCGCCAAAGCACAACAATAGCAAATATATTGCCACAAGAGATATGC
CAACTGTCGTGGAGCTGGATCTGCGTTGTTTATCATGTGCTACGTAGATG
CACACGCGGCGATACTGGAGTCTACCTGCACCGAGCTGGCCCGGGGAGCA
TGAATCACAGGAGGTGTTTGAAGGGTTGTGACCGTGCGTCCAAATGGTGT
ATTGAGAAACATCAAGGAACGGTCTTGGGCTCCGAGACGATTTCCTTGGT
ATCGTGCCACATGACCTACAACCCCTCCCAGGCCAATAGCCCTGAGTCAT
AGGATCACGTACGTACCTTGTAGAGCTGCCATGGCGCCGTGGTTGCTCCG
TTATCCGAGGTGCCCGAAGAGGGCTCTTGAGTTTTCTCTCTTTTTTCTCT
AATAAAGCTCCATTTGGCCTCCCACGCACTGGCTAGTAGCTACAGTCGTG
TGACGGTTTCATCAGTATTTTGTGCCCAAAATATTTTTCCCGGCCCAAGT
GTGTGGGGCCCCTTTAAATCATGCGGTCAGCTCTCGTAGTTTGTAGTCAG
CTATGTTGAGCGCCTTCATCTCGAGATCGCTAGATTTCATCTGAATCTGA
TTGAGGAAGTTGAGGTACACACATCGGTGGATGCCGAATGCATACTGTAG
AAGTTCTCGTGTCGGATAGTCGCATGGATACCCACCGTTACTCCAAACGC
ATCGTGAAAGGATTGCCGCCTTGGTCGAAGCTGGAGAAAACGGCTCTAAA
CACGCGTTGCTCCAATTTAAATCGTATCGACGCTTTGCCTTCGCGAATTT
TCTGTGTTCAATTTCTATTGGTGTCGCAGCACATCACGGACCTGTCGGGG
AGAGAGACCATGGTCCGCGTGACGGGGGGAATGAAGGTTAAAGCTGACCG
CGACGAGGCATCGCCCTATGCGGCCATGCTTGCGGCTCAGGACGTGGCCG
CCCGCTGCAAAGTGAGCAATAGCAACTTGGCTTGTGCGACAAGATACCAA
AACGCCGCTGAACCATCAAATGAGATTGGCCTAGATCAGTCAACCCTGCT
ACCTCTCTGCCGAGACTTCGCGCCAGCCGAGATTTGAAGCGGGTTTGCTC
TGGATGCTTCCGAACTCAAAAATATTGACCGGCAAATGAACGATTTGGGT
GGCTCGTTTGGTGAGACTTCCAACAAATATATTGTAAAGATCCCTCTCAT
CCCTCAGCAACGGCTTTGGGTCGCAGCTGTCGGCAATCGAGGGGCCGAAC
AAGCGCATATCTGACCAGAGGTTTCAGTACGGCCCCGTCCAAGTTTAGGA
GGCAACCCTTGTAACGGATGCCTTACGTGGAGCCTTGATGTCACCCCCTA
CTACTTGTTGCACCCTGGTGGGTTTTGACAGGAGCTGGGCATCACCGCCC
TCCACATCAAGATGCGCGCTACGGGGGGTAACAAGACTAAGACCCCCGGA
CCCGGCGCGCAGTCTGCTCTCCGCGCCCTCGCTCGTGCAGGCATGAAGGT
GAAGGATTCGTAGGCCTGGTAAAAAAACAGTCCGCGCGATTGACCGGCGT
CGCAGATACCATTCTGCCACGTGCGCGGGTGGTCGACACACTCTGATCCT
TTTGCGAGAAACGTCGGCAGTGTTGATACGTAGCAACCTCTGGTGACTCG
TGAACCCTTGTGTCGAACACGGTCCATTAGGGCCCCAACAAAGGCGGGTA
AGAAACGGGGTTGGTTTGACGGGGCATACGGTTATTAGACGCCGTCACAG
GTTTGCTGACCCGCAGACGTAAGTCTGCGACAATGTATATAGTGAGCCGA
CGCGATAACAAGACCTCGCCCCCCATCGACCCATCCCCACCTTTGTCCAA
CCACTCTCAATATCTCCCAAGATCGGCCGCATCGAAGACGTGACCCCGAT
CCCCACCGACTGCACTCGCCGGAAGGGTGGTCGCCGTGGTCGGCGTCTCT
GA
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig847:304671..307522+

>mRNA_A-nodosum_M_contig847.29.1 ID=mRNA_A-nodosum_M_contig847.29.1|Name=mRNA_A-nodosum_M_contig847.29.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=447bp|location=Sequence derived from alignment at A-nodosum_M_contig847:304671..307522+ (Ascophyllum nodosum dioecious)
AAAAAGAACACCGAGGCGAAGGTGGAAGAGAGGGTTACCCTCGGTCCCAA
GGTGGCGGAGGGGGAGAACGTGTTCGGCGTCGCGCACATCTTCGCGTCGT
TCAACGATACCTTCGTGCACATCACGGACCTGTCGGGGAGAGAGACCATG
GTCCGCGTGACGGGGGGAATGAAGGTTAAAGCTGACCGCGACGAGGCATC
GCCCTATGCGGCCATGCTTGCGGCTCAGGACGTGGCCGCCCGCTGCAAAG
AGCTGGGCATCACCGCCCTCCACATCAAGATGCGCGCTACGGGGGGTAAC
AAGACTAAGACCCCCGGACCCGGCGCGCAGTCTGCTCTCCGCGCCCTCGC
TCGTGCAGGCATGAAGATCGGCCGCATCGAAGACGTGACCCCGATCCCCA
CCGACTGCACTCGCCGGAAGGGTGGTCGCCGTGGTCGGCGTCTCTGA
back to top