mRNA_A-nodosum_M_contig847.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig847.2.1
Unique NamemRNA_A-nodosum_M_contig847.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig847.2.1 vs. uniprot
Match: D7G7A3_ECTSI (Hemolysin-type calcium-binding region n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7A3_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 1.340e-13
Identity = 29/63 (46.03%), Postives = 44/63 (69.84%), Query Frame = 2 
Query:   50 KLWRWQDGTAGVDNLYGATVGGDGAIVLTGRTQGDWDDLNAGDFDFMAVKFASGGTEKWRFQV 238
            +LWRWQ+GT+  D L+GA +  D ++V+TG ++GDW + NAG  DF A +  + G+E WR+Q 
Sbjct:  467 ELWRWQNGTSAADKLFGAAILDDDSVVVTGYSEGDWAETNAGGSDFCAARLDANGSEMWRWQA 529
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BLAST of mRNA_A-nodosum_M_contig847.2.1 vs. uniprot
Match: A0A6H5JF09_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF09_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 2.640e-11
Identity = 38/75 (50.67%), Postives = 47/75 (62.67%), Query Frame = 2 
Query:   20 SIIMAAIQPIKLWRWQDGTAGVDNLYGATV-GGDGAIVLTGRTQGDWDDLNAGD-FDFMAVKFASG-GTEKWRFQ 235
            ++ +A+    +LW WQDGT   D L G    GG  A+VL GRT GDW D NAG+  DF AVK  +G G+E WRFQ
Sbjct:   79 AVSLASGDGSRLWSWQDGTEEDDVLVGLVERGGGSAVVLAGRTGGDWADANAGEGTDFAAVKLEAGDGSEIWRFQ 153
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BLAST of mRNA_A-nodosum_M_contig847.2.1 vs. uniprot
Match: D7FXY5_ECTSI (von Willebrand factor type D domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXY5_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 3.570e-11
Identity = 37/65 (56.92%), Postives = 42/65 (64.62%), Query Frame = 2 
Query:   50 KLWRWQDGTAGVDNLYGATV-GGDGAIVLTGRTQGDWDDLNAGD-FDFMAVKFASG-GTEKWRFQ 235
            +LW WQDGT   D L G    GG  A+VL GRT GDW D NAG+  DF AVK  +G G+E WRFQ
Sbjct:  142 QLWSWQDGTEEDDVLMGVVERGGGSAVVLAGRTGGDWADANAGEGTDFAAVKLEAGDGSEIWRFQ 206
[Close]
BLAST of mRNA_A-nodosum_M_contig847.2.1 vs. uniprot
Match: D7FIH5_ECTSI (Hemolysin-type calcium-binding region n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIH5_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 1.640e-7
Identity = 27/62 (43.55%), Postives = 38/62 (61.29%), Query Frame = 2 
Query:   56 WRWQDGTAGVDNLYGATVGGDGAIVLTGRTQGDWDDLNAGDFDFMAVKF-ASGGTEKWRFQV 238
            WRWQ+GT   + +   +   DG +VLTG TQGDW++ N G +  +AVK   S G+  WR+Q 
Sbjct:  125 WRWQEGTEKDEVISTCSKTADGNVVLTGLTQGDWEETNTGLWALVAVKLDVSDGSVIWRYQA 186
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BLAST of mRNA_A-nodosum_M_contig847.2.1 vs. uniprot
Match: A0A6H2C2X3_DOLFA (Uncharacterized protein n=1 Tax=Dolichospermum flos-aquae CCAP 1403/13F TaxID=315271 RepID=A0A6H2C2X3_DOLFA)

HSP 1 Score: 48.9 bits (115), Expect = 8.800e-5
Identity = 24/60 (40.00%), Postives = 34/60 (56.67%), Query Frame = 2 
Query:   50 KLWRWQDGTAGVDNLYGATVGGDGAIVLTGRTQGDWD-DLNAGDFDFMAVKFASGGTEKW 226
            K W    GT+G D  +  T G DGAI ++G TQG+ D   N+G +D    K+ S G++ W
Sbjct:  467 KAWTRLLGTSGEDQAHALTTGSDGAIYVSGTTQGNLDGQTNSGGYDTFITKYNSDGSKAW 526
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig847.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G7A3_ECTSI1.340e-1346.03Hemolysin-type calcium-binding region n=1 Tax=Ecto... [more]
A0A6H5JF09_9PHAE2.640e-1150.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXY5_ECTSI3.570e-1156.92von Willebrand factor type D domain protein n=1 Ta... [more]
D7FIH5_ECTSI1.640e-743.55Hemolysin-type calcium-binding region n=1 Tax=Ecto... [more]
A0A6H2C2X3_DOLFA8.800e-540.00Uncharacterized protein n=1 Tax=Dolichospermum flo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig847contigA-nodosum_M_contig847:55369..55959 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size242
Hectar predicted targeting categoryother localisation
Exons2
Cds size240
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870217.9771192-CDS-A-nodosum_M_contig847:55368..554351680870217.9771192-CDS-A-nodosum_M_contig847:55368..55435Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig847 55369..55435 +
1680870217.989656-CDS-A-nodosum_M_contig847:55786..559591680870217.989656-CDS-A-nodosum_M_contig847:55786..55959Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig847 55787..55959 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig847.2.1prot_A-nodosum_M_contig847.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig847 55369..55959 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig847.2.1

>prot_A-nodosum_M_contig847.2.1 ID=prot_A-nodosum_M_contig847.2.1|Name=mRNA_A-nodosum_M_contig847.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=80bp
NTDAGNEYHNGCDTADQTLALAGRHRRCGQLIRRYGGRRRCYRAHGAYAG
GLGRPQRWRLRLHGREVRFWRDREVAVPG*
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mRNA from alignment at A-nodosum_M_contig847:55369..55959+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig847.2.1 ID=mRNA_A-nodosum_M_contig847.2.1|Name=mRNA_A-nodosum_M_contig847.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=591bp|location=Sequence derived from alignment at A-nodosum_M_contig847:55369..55959+ (Ascophyllum nodosum dioecious)
AACACCGACGCAGGGAACGAGTATCATAATGGCTGCGATACAGCCGATCA
AACTCTGGCGCTGGCAGGCAAGCAAGACGCGTATTTGAAGGAAACCGCGG
CGTAGTATAGAAGATAGTATCCAATTCATCAACATATTTGGGGGGTTTAG
CGGCTTCTTCGCATTCAATCATCATGCGGAAAAAGACGACCAAGTGTCCC
AAGGAGCAACGCGTTCGAAATATGTGCTCCGTTTCCCGCTGGCGTTCACA
GTTATTGGGCTGTATCTAGCGCCCACGCCAGAGGTATATACCGCGGGAGC
TCGCAAAGAAATCGAGGCAACGCGCGAGCGCATGCGCATGTCTAACAATT
ACTCGCCCTCATTGACGTCCGCCGGTTTCACCGCTCACCTCCACCCCCAC
GCAACGGTTACATCTCAGGACGGCACCGCCGGTGTGGACAACTTATACGG
CGCTACGGTGGGAGGAGACGGTGCTATCGTGCTCACGGGGCGTACGCAGG
GGGACTGGGACGACCTCAACGCTGGCGACTTCGACTTCATGGCCGTGAAG
TTCGCTTCTGGCGGGACCGAGAAGTGGCGGTTCCAGGTTAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig847:55369..55959+

>mRNA_A-nodosum_M_contig847.2.1 ID=mRNA_A-nodosum_M_contig847.2.1|Name=mRNA_A-nodosum_M_contig847.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=240bp|location=Sequence derived from alignment at A-nodosum_M_contig847:55369..55959+ (Ascophyllum nodosum dioecious)
AACACCGACGCAGGGAACGAGTATCATAATGGCTGCGATACAGCCGATCA
AACTCTGGCGCTGGCAGGACGGCACCGCCGGTGTGGACAACTTATACGGC
GCTACGGTGGGAGGAGACGGTGCTATCGTGCTCACGGGGCGTACGCAGGG
GGACTGGGACGACCTCAACGCTGGCGACTTCGACTTCATGGCCGTGAAGT
TCGCTTCTGGCGGGACCGAGAAGTGGCGGTTCCAGGTTAG
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