mRNA_A-nodosum_M_contig8462.6.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig8462.6.1
Unique NamemRNA_A-nodosum_M_contig8462.6.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig8462.6.1 vs. uniprot
Match: A0A6H5JNI3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNI3_9PHAE)

HSP 1 Score: 47.8 bits (112), Expect = 5.590e-5
Identity = 19/27 (70.37%), Postives = 25/27 (92.59%), Query Frame = 1 
Query:    7 LPRPLWVLGNEGGKTVIELVLLNLVKA 87
            +PRPLW+LG  GGKT++ELVLLNLV++
Sbjct:  116 VPRPLWLLGGSGGKTIVELVLLNLVRS 142
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BLAST of mRNA_A-nodosum_M_contig8462.6.1 vs. uniprot
Match: D7FND7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FND7_ECTSI)

HSP 1 Score: 47.8 bits (112), Expect = 5.620e-5
Identity = 19/27 (70.37%), Postives = 25/27 (92.59%), Query Frame = 1 
Query:    7 LPRPLWVLGNEGGKTVIELVLLNLVKA 87
            +PRPLW+LG  GGKT++ELVLLNLV++
Sbjct:  132 VPRPLWLLGGSGGKTIVELVLLNLVRS 158
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8462.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JNI3_9PHAE5.590e-570.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FND7_ECTSI5.620e-570.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8462contigA-nodosum_M_contig8462:15018..16436 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size140
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size126
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870217.9202857-UTR-A-nodosum_M_contig8462:15017..150311680870217.9202857-UTR-A-nodosum_M_contig8462:15017..15031Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig8462 15018..15031 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870217.9316232-CDS-A-nodosum_M_contig8462:15031..150791680870217.9316232-CDS-A-nodosum_M_contig8462:15031..15079Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8462 15032..15079 -
1680870217.9442563-CDS-A-nodosum_M_contig8462:16358..164361680870217.9442563-CDS-A-nodosum_M_contig8462:16358..16436Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8462 16359..16436 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8462.6.1prot_A-nodosum_M_contig8462.6.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig8462 15032..16436 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig8462.6.1

>prot_A-nodosum_M_contig8462.6.1 ID=prot_A-nodosum_M_contig8462.6.1|Name=mRNA_A-nodosum_M_contig8462.6.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=42bp
EYLPRPLWVLGNEGGKTVIELVLLNLVKAYSGASPPRASHG*
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mRNA from alignment at A-nodosum_M_contig8462:15018..16436-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig8462.6.1 ID=mRNA_A-nodosum_M_contig8462.6.1|Name=mRNA_A-nodosum_M_contig8462.6.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1419bp|location=Sequence derived from alignment at A-nodosum_M_contig8462:15018..16436- (Ascophyllum nodosum dioecious)
GAATATTTACCGCGTCCGCTGTGGGTCCTGGGCAACGAAGGTGGAAAGAC
CGTCATTGAGCTCGTGCTGCTAAATCTGGTGAGGATTGGTGTGTGTGTGT
GTGTGTGTGTGTGTGTACTTACTAAAACTGCACATGACCGACCGCGCAAT
CCGGTCCCGTCATCCTATTGCTAGTCATTCTATGCCACCGCGTTGATCCT
CCCAGGGTGTGTGTGTTTGTACTTAATAAATTGCACATAACCGCGCAATC
GACCCTGTCATCCTAGTAATTCTAAGCTACTCGCATTGGTCCTATTAATA
CCAAGGGGCATCAAAATGGTATATAATGTGCCTAGTGTGTGTATCAAGAG
ATCCAATTTTATTTTTTGTCAAAAGTTTCTTGGGAGGAAAGGTTGATGGG
GGGGGGCGCGCCTATTTACCACATATGGGTGATTCTGTCGAACCACCACC
CAAGCCAAACAGCAAGTCACTCATTTTCTGTTTTTTTTTCAATTCCGGTT
GGCCAACCACCAATTCCGGTTGAGCCAACCCGACCAATATCGCTAACGCT
AACCCAGGCCCCTCTACCCCAGCTGCCCGCGTGGTCCCAATTCATGGATG
GAGAACCGAAAAGGGGACAAAAGGACACAGGGGGACAAAAGGGGAGGGGC
GCTGGGTAGTATTAGTAGTTTCCCTGGGTTTTCATCGCGTGCGGTGCTTG
GGTGGTGTTCGACAGAATTACCCATGTGTGGTAAAAAGGCGCGGTCGATG
GGAGGGGGGTTGCTAAGTTTTTGGAGGGAGGATGACTCGAGCCAACAGGG
GTAGAGAAGACGTTTCTCCATCTCACCAGGATTTTTTTGAATCACTCCTC
CTAGTTTTGATCATCGAAACGCCTACATGAAACGCACCCCCTTATATACC
CTGAACCTTACCGCCTGGCTTTTTGTGAAACCCCCTTTCCCCCCGTTTCG
CCTTCGTCCATTACGGGAACAGTAACTATATACTGTACTAAGTAACTATA
TACTAAGTAACTATATAGCTTAAAAGCTTGCTTTTTTCAGTCTTCGCTCG
CTCGGTAATCATGCGAATGAAATTAAATGTAACTGTTTTGTAATACGATC
TTGTGTGTGTGTGTGCGTGTATTTATTAAACTGCGCATAACCGCGTAATC
CGGCCCTGTCATCCTACTTCGTATTAACAGTGTAAATACTTTTTTTTTTA
ACTATACATGTGCATATATATATATATATATATTTATTTATTTTTTGGAG
GGGGAAGAAGGGATTTCACAAAAGACAAAATGGAGGCAAATGTTTTTTCA
CAGGAAACGGCTGACCTCAAACCTTGGGGATCTTGTAACTGTGAACCGTG
CTTGCAGGTCAAGGCCTACTCAGGAGCGTCTCCACCGAGGGCAAGCCATG
GCTAGCTCTCGAGACCGAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig8462:15018..16436-

>mRNA_A-nodosum_M_contig8462.6.1 ID=mRNA_A-nodosum_M_contig8462.6.1|Name=mRNA_A-nodosum_M_contig8462.6.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=126bp|location=Sequence derived from alignment at A-nodosum_M_contig8462:15018..16436- (Ascophyllum nodosum dioecious)
GAATATTTACCGCGTCCGCTGTGGGTCCTGGGCAACGAAGGTGGAAAGAC
CGTCATTGAGCTCGTGCTGCTAAATCTGGTCAAGGCCTACTCAGGAGCGT
CTCCACCGAGGGCAAGCCATGGCTAG
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