mRNA_A-nodosum_M_contig8462.5.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig8462.5.1
Unique NamemRNA_A-nodosum_M_contig8462.5.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8462.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8462contigA-nodosum_M_contig8462:13332..16524 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size260
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size144
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870217.860724-UTR-A-nodosum_M_contig8462:13331..134451680870217.860724-UTR-A-nodosum_M_contig8462:13331..13445Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig8462 13332..13445 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870217.870973-CDS-A-nodosum_M_contig8462:13445..134741680870217.870973-CDS-A-nodosum_M_contig8462:13445..13474Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8462 13446..13474 +
1680870217.8852696-CDS-A-nodosum_M_contig8462:16409..165241680870217.8852696-CDS-A-nodosum_M_contig8462:16409..16524Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8462 16410..16524 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8462.5.1prot_A-nodosum_M_contig8462.5.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig8462 13446..16524 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig8462.5.1

>prot_A-nodosum_M_contig8462.5.1 ID=prot_A-nodosum_M_contig8462.5.1|Name=mRNA_A-nodosum_M_contig8462.5.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=48bp
MALIGRLEARTHSGRGKYSSPDCNADAAFRLTVVMSAWQTLAGGYGID
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mRNA from alignment at A-nodosum_M_contig8462:13332..16524+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig8462.5.1 ID=mRNA_A-nodosum_M_contig8462.5.1|Name=mRNA_A-nodosum_M_contig8462.5.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3193bp|location=Sequence derived from alignment at A-nodosum_M_contig8462:13332..16524+ (Ascophyllum nodosum dioecious)
GAACGCGTGGCTTGACCTCCGATTGTTTCTGTGTAATATCCTACCGACTC
AGGACTACTCACTTGAGGAGAAGGTGGAATCCAAAGTTCCCGATGACGTC
TTGAGTACGGCGCGATGGCATTAATTGGCAGATTGGAAGCGAGGCGGGTA
AAAAAGGCGGGCCGTGATCATCTTCCTTCGATACTTTCAACATGTCCACT
TCATATCATTAGTCAGTGTGGGAAAATAGAGGCGCATACGGTATTAATTG
GTCCATGGTGACCTGCCAAGGCAGCATCCGTTACTGGAACTACCTTGAGG
ACTACCGGCCCTGTGCCAGCGGACTCTCGGCAGTGAACGCTATCGGTACG
CAATTGCGTGATCCGGTAAATCGGGACTGCCACGATGGCGTATGTATGGC
GGTTTTAAATCAATATATGGACGCCGCCGCGAACCTCGGGAGGAATGCCG
TAAGTAGTAAGCACCAGGTTCAGCCTGAGTATGGAGATGAGCAGGCTGAC
GCGGGACGGAACTGCCGAACCTGTCTCGCGAGACCAAATTCTCAAGCGCA
AACGCGGACAGGGAAATATGAATTTTCCCTGTTACAGCTGACCACGAGCA
GGATTGATTGGCAACCATACCCGGTTGATCCATACATCCCTGGTCCATAT
ATAGCTCAACGCCCTCTTCCACCTTCCACCAGCTCTCCACAGTACCACCT
AGCTACGAAACCTCAGGTGAAAGACATGTTTGTATAGTATTCAGTATGAG
TCGTACTTCTATGTACTCAGATGAAAGACCCAAAGTTAAGACACAGAAAG
CAATGTCTCATGAACGAGAGATCATACCGTAAGGCTTGCCTTGCCTTCAC
GGTGGCCCGAGGCGTACAGGTGAAGCATATCATAGCTACAGGCTGCCAAA
ACGTATGCCAAATAAACTACAATACTGCAAGATTTTTCTTTGTGACGAAC
ACGTCGATGTGTGTGTTGTCATCCCATTTATTCTGGACGTCAGGCTTGTG
GACGTACCAGCCGGGGTCACACAGGAGGAAGATCACACAGGATTTCTCGC
AGTGCCACCTTCCTTCTGCGGTGCTTGCCTTAATTTTTCTCGCGAGAAGG
ATTCAGCCGTTCTTTTCCCTTGTCGACCGTGAAGTCGTTTTACTTTTTAA
AACGCGTTTTCTGCTTCTCAAAAAGTGAAAAAAAAAACGAGGCAATCACC
TCTCTCAGTTTCAGCGCCCACCGACAATTAACGTTTACTTTTCACTTTTT
AAAGTTTATGTGTATGATAGACACAAACGCACACACACAGACACCCACAA
AAAAAAATGGAGCCTGTGTGGTGATTTTTGTCTATCGTGCATTTTGGGGC
CGTACCTTTTCTCTTTTTGATTTTTTTTTTCTGCCTCTGGAGAAGAACGT
ATGACTAAAAGGAGCGCTATTTATTTTATTTTTTATTTTATAATCTTGAA
AATAATTGAAACTCCATTTTTTGTGTCTTTTCTCCGTTCTTTTTTTTTGC
TCCCAGAGAACGAAGGAACACACGACGCTTTTTCTTATTTTTTTTAACTT
TTTAGTTCAGATTTTGCAAGTTAAAAAAAAAAAAAAACGTGTCCCTGGGG
AAAGGTAGCGATGCTGTCAAGCTCTATGAAGACCAGTAAATTCGGCAAGG
CTCTATCAGTAGAGCTGTACATTTAGTTTGGGTTACCTCGGTCTCGAGAG
CTAGCCATGGCTTGCCCTCGGTGGAGACGCTCCTGAGTAGGCCTTGACCT
GCAAGCACGGTTCACAGTTACAAGATCCCCAAGGTTTGAGGTCAGCCGTT
TCCTGTGAAAAAACATTTGCCTCCATTTTGTCTTTTGTGAAATCCCTTCT
TCCCCCTCCAAAAAATAAATAAATATATATATATATATATATGCACATGT
ATAGTTAAAAAAAAAAGTATTTACACTGTTAATACGAAGTAGGATGACAG
GGCCGGATTACGCGGTTATGCGCAGTTTAATAAATACACGCACACACACA
CACAAGATCGTATTACAAAACAGTTACATTTAATTTCATTCGCATGATTA
CCGAGCGAGCGAAGACTGAAAAAAGCAAGCTTTTAAGCTATATAGTTACT
TAGTATATAGTTACTTAGTACAGTATATAGTTACTGTTCCCGTAATGGAC
GAAGGCGAAACGGGGGGAAAGGGGGTTTCACAAAAAGCCAGGCGGTAAGG
TTCAGGGTATATAAGGGGGTGCGTTTCATGTAGGCGTTTCGATGATCAAA
ACTAGGAGGAGTGATTCAAAAAAATCCTGGTGAGATGGAGAAACGTCTTC
TCTACCCCTGTTGGCTCGAGTCATCCTCCCTCCAAAAACTTAGCAACCCC
CCTCCCATCGACCGCGCCTTTTTACCACACATGGGTAATTCTGTCGAACA
CCACCCAAGCACCGCACGCGATGAAAACCCAGGGAAACTACTAATACTAC
CCAGCGCCCCTCCCCTTTTGTCCCCCTGTGTCCTTTTGTCCCCTTTTCGG
TTCTCCATCCATGAATTGGGACCACGCGGGCAGCTGGGGTAGAGGGGCCT
GGGTTAGCGTTAGCGATATTGGTCGGGTTGGCTCAACCGGAATTGGTGGT
TGGCCAACCGGAATTGAAAAAAAAACAGAAAATGAGTGACTTGCTGTTTG
GCTTGGGTGGTGGTTCGACAGAATCACCCATATGTGGTAAATAGGCGCGC
CCCCCCCCATCAACCTTTCCTCCCAAGAAACTTTTGACAAAAAATAAAAT
TGGATCTCTTGATACACACACTAGGCACATTATATACCATTTTGATGCCC
CTTGGTATTAATAGGACCAATGCGAGTAGCTTAGAATTACTAGGATGACA
GGGTCGATTGCGCGGTTATGTGCAATTTATTAAGTACAAACACACACACC
CTGGGAGGATCAACGCGGTGGCATAGAATGACTAGCAATAGGATGACGGG
ACCGGATTGCGCGGTCGGTCATGTGCAGTTTTAGTAAGTACACACACACA
CACACACACACACACACCAATCCTCACCAGATTTAGCAGCACGAGCTCAA
TGACGGTCTTTCCACCTTCGTTGCCCAGGACCCACAGCGGACGCGGTAAA
TATTCCTCCCCCGACTGCAACGCCGATGCCGCCTTTCGGCTCACCGTGGT
CATGAGCGCCTGGCAAACGTTAGCCGGGGGGTACGGTATCGAC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig8462:13332..16524+

>mRNA_A-nodosum_M_contig8462.5.1 ID=mRNA_A-nodosum_M_contig8462.5.1|Name=mRNA_A-nodosum_M_contig8462.5.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=144bp|location=Sequence derived from alignment at A-nodosum_M_contig8462:13332..16524+ (Ascophyllum nodosum dioecious)
ATGGCATTAATTGGCAGATTGGAAGCGAGGACCCACAGCGGACGCGGTAA
ATATTCCTCCCCCGACTGCAACGCCGATGCCGCCTTTCGGCTCACCGTGG
TCATGAGCGCCTGGCAAACGTTAGCCGGGGGGTACGGTATCGAC
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