mRNA_A-nodosum_M_contig845.1.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig845.1.1
Unique NamemRNA_A-nodosum_M_contig845.1.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig845.1.1 vs. uniprot
Match: A0A816YMV4_9BILA (Hypothetical protein n=1 Tax=Rotaria magnacalcarata TaxID=392030 RepID=A0A816YMV4_9BILA)

HSP 1 Score: 54.7 bits (130), Expect = 4.380e-9
Identity = 24/35 (68.57%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:    7 RPYHVDYTTSRPLCEVKRRRAGLVLRWGTTWEAPV 111
            RPYHV+YT+SRP+ EVK+RRA LVL W T WE  V
Sbjct:    1 RPYHVEYTSSRPITEVKQRRARLVLGWVTAWEYRV 35
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BLAST of mRNA_A-nodosum_M_contig845.1.1 vs. uniprot
Match: A0A0N4THB6_BRUPA (Uncharacterized protein n=1 Tax=Brugia pahangi TaxID=6280 RepID=A0A0N4THB6_BRUPA)

HSP 1 Score: 53.1 bits (126), Expect = 1.790e-8
Identity = 23/36 (63.89%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:    7 RPYHVDYTTSRPLCEVKRRRAGLVLRWGTTWEAPVL 114
            RPYHV+ TTSRP+C+V++R AGLVL   T WE+ VL
Sbjct:   15 RPYHVESTTSRPICQVRQRSAGLVLGSETAWESQVL 50
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BLAST of mRNA_A-nodosum_M_contig845.1.1 vs. uniprot
Match: A0A3S0ZIY3_ELYCH (Uncharacterized protein (Fragment) n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A3S0ZIY3_ELYCH)

HSP 1 Score: 54.3 bits (129), Expect = 1.980e-8
Identity = 25/36 (69.44%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:    7 RPYHVDYTTSRPLCEVKRRRAGLVLRWGTTWEAPVL 114
            RPYHV+ T SRP+ EVK+RRA LVLRW T WE  VL
Sbjct:   65 RPYHVENTGSRPITEVKQRRAWLVLRWVTAWEHHVL 100
[Close]
BLAST of mRNA_A-nodosum_M_contig845.1.1 vs. uniprot
Match: A0A815TME6_ADIRI (Hypothetical protein n=2 Tax=Adineta ricciae TaxID=249248 RepID=A0A815TME6_ADIRI)

HSP 1 Score: 56.2 bits (134), Expect = 3.550e-8
Identity = 25/37 (67.57%), Postives = 29/37 (78.38%), Query Frame = 1 
Query:    1 QERPYHVDYTTSRPLCEVKRRRAGLVLRWGTTWEAPV 111
            Q RPYHV+YT+SRP+ EVK+RRA LVL W T WE  V
Sbjct:  243 QPRPYHVEYTSSRPITEVKQRRARLVLGWVTAWEYRV 279
[Close]
BLAST of mRNA_A-nodosum_M_contig845.1.1 vs. uniprot
Match: A0A3S0Z3S7_ELYCH (Uncharacterized protein (Fragment) n=2 Tax=Elysia chlorotica TaxID=188477 RepID=A0A3S0Z3S7_ELYCH)

HSP 1 Score: 52.4 bits (124), Expect = 5.980e-8
Identity = 23/32 (71.88%), Postives = 26/32 (81.25%), Query Frame = 1 
Query:    7 RPYHVDYTTSRPLCEVKRRRAGLVLRWGTTWE 102
            RPYHV+ T SRP+ EVK+RRA LVLRW T WE
Sbjct:    1 RPYHVENTGSRPITEVKQRRAWLVLRWVTAWE 32
[Close]
BLAST of mRNA_A-nodosum_M_contig845.1.1 vs. uniprot
Match: V4BHB9_LOTGI (Uncharacterized protein (Fragment) n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4BHB9_LOTGI)

HSP 1 Score: 52.8 bits (125), Expect = 6.540e-8
Identity = 24/36 (66.67%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:    7 RPYHVDYTTSRPLCEVKRRRAGLVLRWGTTWEAPVL 114
            RPYHV+ T+SRP+ EVK+RRA LVL W T WE  VL
Sbjct:   56 RPYHVENTSSRPITEVKQRRARLVLGWVTAWEHRVL 91
[Close]
BLAST of mRNA_A-nodosum_M_contig845.1.1 vs. uniprot
Match: A0A183UVC8_TOXCA (Uncharacterized protein n=1 Tax=Toxocara canis TaxID=6265 RepID=A0A183UVC8_TOXCA)

HSP 1 Score: 52.8 bits (125), Expect = 7.990e-8
Identity = 24/36 (66.67%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:    7 RPYHVDYTTSRPLCEVKRRRAGLVLRWGTTWEAPVL 114
            RPYHV+ TTSRP+C VK+RRA LVL   T WE+ VL
Sbjct:   65 RPYHVENTTSRPICHVKQRRAWLVLGSETAWESQVL 100
[Close]
BLAST of mRNA_A-nodosum_M_contig845.1.1 vs. uniprot
Match: A0A815RAB9_ADIRI (Hypothetical protein n=1 Tax=Adineta ricciae TaxID=249248 RepID=A0A815RAB9_ADIRI)

HSP 1 Score: 54.7 bits (130), Expect = 1.440e-7
Identity = 24/35 (68.57%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:    7 RPYHVDYTTSRPLCEVKRRRAGLVLRWGTTWEAPV 111
            RPYHV+YT+SRP+ EVK+RRA LVL W T WE  V
Sbjct: 1694 RPYHVEYTSSRPITEVKQRRARLVLGWVTAWEYRV 1728
[Close]
BLAST of mRNA_A-nodosum_M_contig845.1.1 vs. uniprot
Match: A0A815F560_ADIRI (Hypothetical protein n=6 Tax=Adineta ricciae TaxID=249248 RepID=A0A815F560_ADIRI)

HSP 1 Score: 54.7 bits (130), Expect = 1.450e-7
Identity = 24/35 (68.57%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:    7 RPYHVDYTTSRPLCEVKRRRAGLVLRWGTTWEAPV 111
            RPYHV+YT+SRP+ EVK+RRA LVL W T WE  V
Sbjct:  821 RPYHVEYTSSRPITEVKQRRARLVLGWVTAWEYRV 855
[Close]
BLAST of mRNA_A-nodosum_M_contig845.1.1 vs. uniprot
Match: A0A815DD86_9BILA (Hypothetical protein n=1 Tax=Adineta steineri TaxID=433720 RepID=A0A815DD86_9BILA)

HSP 1 Score: 54.7 bits (130), Expect = 1.450e-7
Identity = 24/35 (68.57%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:    7 RPYHVDYTTSRPLCEVKRRRAGLVLRWGTTWEAPV 111
            RPYHV+YT+SRP+ EVK+RRA LVL W T WE  V
Sbjct:  505 RPYHVEYTSSRPITEVKQRRARLVLGWVTAWEYRV 539
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig845.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A816YMV4_9BILA4.380e-968.57Hypothetical protein n=1 Tax=Rotaria magnacalcarat... [more]
A0A0N4THB6_BRUPA1.790e-863.89Uncharacterized protein n=1 Tax=Brugia pahangi Tax... [more]
A0A3S0ZIY3_ELYCH1.980e-869.44Uncharacterized protein (Fragment) n=1 Tax=Elysia ... [more]
A0A815TME6_ADIRI3.550e-867.57Hypothetical protein n=2 Tax=Adineta ricciae TaxID... [more]
A0A3S0Z3S7_ELYCH5.980e-871.88Uncharacterized protein (Fragment) n=2 Tax=Elysia ... [more]
V4BHB9_LOTGI6.540e-866.67Uncharacterized protein (Fragment) n=1 Tax=Lottia ... [more]
A0A183UVC8_TOXCA7.990e-866.67Uncharacterized protein n=1 Tax=Toxocara canis Tax... [more]
A0A815RAB9_ADIRI1.440e-768.57Hypothetical protein n=1 Tax=Adineta ricciae TaxID... [more]
A0A815F560_ADIRI1.450e-768.57Hypothetical protein n=6 Tax=Adineta ricciae TaxID... [more]
A0A815DD86_9BILA1.450e-768.57Hypothetical protein n=1 Tax=Adineta steineri TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig845contigA-nodosum_M_contig845:14..130 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog35128.Thaps12187
Model size117
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue8.31e-08
EggNOG OGs2CRUX@1|root,2R98J@2759|Eukaryota,2XH8G@2836|Bacillariophyta
Cds size117
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870215.1788614-CDS-A-nodosum_M_contig845:13..1301680870215.1788614-CDS-A-nodosum_M_contig845:13..130Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig845 14..130 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig845.1.1prot_A-nodosum_M_contig845.1.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig845 14..130 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig845.1.1

>prot_A-nodosum_M_contig845.1.1 ID=prot_A-nodosum_M_contig845.1.1|Name=mRNA_A-nodosum_M_contig845.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=39bp
QERPYHVDYTTSRPLCEVKRRRAGLVLRWGTTWEAPVLF
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mRNA from alignment at A-nodosum_M_contig845:14..130-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig845.1.1 ID=mRNA_A-nodosum_M_contig845.1.1|Name=mRNA_A-nodosum_M_contig845.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=117bp|location=Sequence derived from alignment at A-nodosum_M_contig845:14..130- (Ascophyllum nodosum dioecious)
CAGGAACGGCCATACCACGTTGACTACACCACATCCCGTCCGCTCTGTGA
AGTTAAGCGGCGTCGGGCCGGGCTAGTACTACGGTGGGGGACCACGTGGG
AAGCCCCGGTGTTGTTC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig845:14..130-

>mRNA_A-nodosum_M_contig845.1.1 ID=mRNA_A-nodosum_M_contig845.1.1|Name=mRNA_A-nodosum_M_contig845.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=117bp|location=Sequence derived from alignment at A-nodosum_M_contig845:14..130- (Ascophyllum nodosum dioecious)
CAGGAACGGCCATACCACGTTGACTACACCACATCCCGTCCGCTCTGTGA
AGTTAAGCGGCGTCGGGCCGGGCTAGTACTACGGTGGGGGACCACGTGGG
AAGCCCCGGTGTTGTTC
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