mRNA_A-nodosum_M_contig8434.4.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig8434.4.1
Unique NamemRNA_A-nodosum_M_contig8434.4.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig8434.4.1 vs. uniprot
Match: D7FWJ1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWJ1_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 3.390e-11
Identity = 35/50 (70.00%), Postives = 35/50 (70.00%), Query Frame = 3 
Query:   42 MAQAVGYSEQEAA--------ENDGVDPWKAARQGDLDALLQYIDDNGDV 167
            MAQAV YS  E          E DGVDPWKAA QGDLDALLQYIDDNGDV
Sbjct:    1 MAQAVAYSASEEKILDSEQEPEMDGVDPWKAAMQGDLDALLQYIDDNGDV 50
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8434.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FWJ1_ECTSI3.390e-1170.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8434contigA-nodosum_M_contig8434:3971..7211 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size168
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size168
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870213.1305285-CDS-A-nodosum_M_contig8434:3970..40191680870213.1305285-CDS-A-nodosum_M_contig8434:3970..4019Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8434 3971..4019 -
1680870213.8364904-CDS-A-nodosum_M_contig8434:7092..72111680870213.8364904-CDS-A-nodosum_M_contig8434:7092..7211Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8434 7093..7211 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8434.4.1prot_A-nodosum_M_contig8434.4.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig8434 3971..7211 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig8434.4.1

>prot_A-nodosum_M_contig8434.4.1 ID=prot_A-nodosum_M_contig8434.4.1|Name=mRNA_A-nodosum_M_contig8434.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=56bp
VFFLNPKSAGLAAIWLRRWGTRSRRQLKMTALTLGRRQGRATWMRCCSIS
TTTET*
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mRNA from alignment at A-nodosum_M_contig8434:3971..7211-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig8434.4.1 ID=mRNA_A-nodosum_M_contig8434.4.1|Name=mRNA_A-nodosum_M_contig8434.4.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3241bp|location=Sequence derived from alignment at A-nodosum_M_contig8434:3971..7211- (Ascophyllum nodosum dioecious)
GTTTTCTTTCTAAACCCGAAGAGCGCGGGACTGGCTGCAATATGGCTCAG
GCGGTGGGGTACTCGGAGCAGGAGGCAGCTGAAAATGACGGCGTTGACCC
TTGGAAGGCGGCAAGGCAGGTATGTATCACCCGCAGTTATGATCATCCAG
TTATTTCAATCGTTGTAGACTCGTAACCCAGCTGTAGTCAGCTGTACAAA
GACTGCCGACTGTCTTCTGTTGGTTATTGAAGATTGCAGATTGCGACACA
CGTACTGTACTGCACTGTATGAATACCAGTAAAGAAATCTTTCTTAGCAG
ATTTCGTACGGCTACCTGTATTACTTCAAGTAACTTTTTTTTCTTCAGGC
GACTGCGCTTTAACAGCTGTGCTTTTCTCTTTTCCTTCCCTTCATACAGT
ATTAGTATTAGTATTAGTATTAATGGTACTCTCTTCACGCGGCTGCTCAA
CCACGAGCGGGACAGGACCTGAACGACGCACACTCGGTATCCATAGATCT
CTATAAATCCAGTATGATAGTCCTGTCATACAGTAAGTACAGTATTAATA
GTTCAATTTCATCTCTCCTGCATTTTGTAAGTAATTATATTAAATATTAG
TACAGGCCGGTCGACCCCGGTAGCTCAGTCGGCACCTCGTAACCTTCTGA
CACGCTGGGACGTGAGTTCGATCCCGGCAAACGGGATTTTTTTCACTAAA
AACAAAAAAAACAAACTAAAAATGCCCAACGGGTGGAGAACAATTAATTC
GTTAGTACACAAAATTCGACTTCACGGTCGACGAGGGAAAGGAATGGCTG
AATCCTTCTCGCGACAAAAATCAAGGCACGCACCGCAGAAGGAAGGTGGA
TTAAAAATCCTGTGTGACCTTCCTCCTGTGTGACCCCGGCTGGTACGTCC
AACGAACTTGATGTCCAGAATGGATGGGAAGAAAACACACAACACACACT
GTGCTTGTACCAGTACGATAGTTGGGAACACATTCAAGTACTGTCAGTTG
TAGGACTTTTTTTTATCTAGTGCCTAAAAAATACTGTATGAAAGTACATA
GGTATGTATCACGTTGGGCTCTTCCCTACGTACGGCTGAAGTATTAATAC
AAGTATCATATTTTTGCTCTGTTAATAACTACCTGGTATTCTATTTCAGC
CGATGCCCAAGCGTGATCTTCCCCTACAGTGTAGAGCTACAGTATCAGGG
TTTTTAAAGAAAAATCAGAACGCACCTAGACTTTCTGAGCACCCCCCGGT
TAGGGGGGAAAAAATGTCTTGTATAGTGTCTCAGCTGCAGCTATTGAAAC
ATTGAATCATTGGTTGACAAAAGTGTTCAAGAGTGCTGAACTTGCTTCGC
CCGAACAAATCGTATTATTAATAATATGATAGGCGAGAACCGGGGTGGGT
GCAGTAAGATGGCAAGATCCGTGGTGTGACCACAGGTATTTATAGAATGG
TATATAACGGTCCAGTACACGTGACGGATGGGATTGGTATGATAGCTTAT
CTTATTAGCAATAAGACGTTGAGGCCATTGGCCGTGAGATACCAAATATA
CCGAAATGTATGTACGTATAATACGGTATTTATCAACGTCCAGGGTTATT
ATCATACTGCTGCTGTAGTCTATCTATCATACCACTCTTTTGTTTGTTTT
AAATCTCACTCATTAGAGCTATTAATAGACTACAGGTATCATATTCTTAA
TATTAATAGGGTATTGATACTATTTACCTGGTATATTTATAACCGCCGGT
ACTTTCAACATGCCCACTGCATATGATACCAATATCTAGTGGGTGTGGTG
TGGGAAGGAGAGGCGAATGTTAATTGGTCCATGGTGACCTTACCTGCCAA
GGCAGCACTCGTTTGGAATTAATTACCTTGAGGTTTACTGGCCCTGTGCT
GGCGGACTCTCGGCAGTGAACGCCATCGGTACGCAATTGCGTGACCCGAT
AAACTCGGGATTGATCCGATGGCGTATGGCGGTTTCATAAATGGACACCG
CGCCGCCGCGGAACTCGGGAGGAATCCCGTAAGTAAGCACCAGATCCAGC
CAGAGTATGTATGGAGATGAGCAGGCTGACGCGGGACGGGACGGCTGAAC
CCGTCTCGCGAGACCACATTCTCAGGCACGTACGGGGACACGGGAATATT
AATTTTCCCTGTTCAGCTGACCACGAGCAGGATTGGCAACCTTACCCGGT
CGGTTGATCCATACTCTGCTATATGTGATGACTATACATACATACATACA
TACATACATACATACCTGGTACATACATTGTATTGCTGCTGATGGTGGCC
TCAACGTCCTATACTGTATAGTAATAAGTTACCAATCCCACATATTAATA
CTGCAACATTACCATCCTGTGATACCTGTGGCCGCTAAGGGTCTTCTCTC
TCTCTCTCTCCCCGTTACTCGAGCTACAGACAGTACCTTATTAATAGTAC
CTTATTAATAGGACCTTATTAATAGGACCTTGAGGGCTACCTACCGGCCC
TGTGCCGGCGGACTCTCGGCGGTAACGCCATCGGTACGCGATTGCGTTAT
CCGATAAACTATGATACTGTAATAGAGACTGACTGACCCGATGGCGGTTG
ACGGTATAGTATAGTATAGATCTAGATGAATGCCGTCGCGAAAAACGAAA
CCCGCGAGTGTAAGCGCCAGATTCAATTCAGCCAGAGCATCATATGGAGA
ATGGGCGAGAGAGTATTATAATGCGGGACGAGACGGCCGAACCCGTCTCG
CGAGACTAAATTCGTAGGCGCCAAAGGGGACAGGGGGAAAAAGTACTTTC
TTTCTCCGTTGAGCTGACCACAAGCAGGATTGGCAACCATTCCCCGGTCG
AGGCTCTGTCTGCTAAACGTGATTCATATTTCATATATACACATACTGTC
TGCACTATTTATAGTATGTACTAGTATGTAATATTAATAGAGGAGGTGAT
GGTGGAAGATGCCTCGCAATGTGTTTCTGCTGTTGTGTGTCGTTGTTAAA
AAAGCATTCGAACCTACGTTCCCTTTTTGCCATTCAAGCCTATGAATAGT
TCAGGTCAGAGCAACGAAACTTGCAAGCTTTTCGCTCCGTTCTTCCGACA
AGGCTCTTGCTCTTAATCGAACCTAACCGATGCGTTCCGGTTGCGCCGTG
CTCGATCGCCTCGTCCATCCTTGGTTCGTGTGTTCTCCAAAGGGCGACCT
GGATGCGTTGCTGCAGTATATCGACGACAACGGAGACGTGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig8434:3971..7211-

>mRNA_A-nodosum_M_contig8434.4.1 ID=mRNA_A-nodosum_M_contig8434.4.1|Name=mRNA_A-nodosum_M_contig8434.4.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=168bp|location=Sequence derived from alignment at A-nodosum_M_contig8434:3971..7211- (Ascophyllum nodosum dioecious)
GTTTTCTTTCTAAACCCGAAGAGCGCGGGACTGGCTGCAATATGGCTCAG
GCGGTGGGGTACTCGGAGCAGGAGGCAGCTGAAAATGACGGCGTTGACCC
TTGGAAGGCGGCAAGGCAGGGCGACCTGGATGCGTTGCTGCAGTATATCG
ACGACAACGGAGACGTGA
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