mRNA_A-nodosum_M_contig8434.12.2 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig8434.12.2
Unique NamemRNA_A-nodosum_M_contig8434.12.2
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig8434.12.2 vs. uniprot
Match: D7G191_ECTSI (Alpha-1,3-glucosyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G191_ECTSI)

HSP 1 Score: 130 bits (328), Expect = 2.040e-33
Identity = 55/73 (75.34%), Postives = 63/73 (86.30%), Query Frame = 1
Query:    1 WKPSPLLAICFALLLRCMVSLWPYSGRAQQPMYGDYEAQRHWMEVTTALPLHQWY--STEYWGLDYPPLIAYL 213
            W+P PL+ + FALLLRCMVSLWPYSG+ ++PMYGDYEAQRHWME+T ALPLHQWY    EYWGLDYPPL AY+
Sbjct:   14 WQPGPLVVVWFALLLRCMVSLWPYSGQGERPMYGDYEAQRHWMEITNALPLHQWYRFDLEYWGLDYPPLTAYV 86          
BLAST of mRNA_A-nodosum_M_contig8434.12.2 vs. uniprot
Match: A0A2R5LPK4_9ACAR (Alpha-1,3-glucosyltransferase (Fragment) n=1 Tax=Ornithodoros turicata TaxID=34597 RepID=A0A2R5LPK4_9ACAR)

HSP 1 Score: 96.3 bits (238), Expect = 1.030e-22
Identity = 43/68 (63.24%), Postives = 50/68 (73.53%), Query Frame = 1
Query:   25 ICFALLLRCMVSLWPYSGRAQQPMYGDYEAQRHWMEVTTALPLHQWYST------EYWGLDYPPLIAY 210
            I  ALLLR   SL+PYSG  +QPM+GDYEAQRHWME+T  LP+H+WY        +YWGLDYPPL AY
Sbjct:   15 IFLALLLRWGTSLYPYSGAGKQPMFGDYEAQRHWMEITANLPVHEWYKNSSQNDLQYWGLDYPPLTAY 82          
BLAST of mRNA_A-nodosum_M_contig8434.12.2 vs. uniprot
Match: A0A4P9Y0K8_9FUNG (Alpha-1,3-glucosyltransferase n=1 Tax=Piptocephalis cylindrospora TaxID=1907219 RepID=A0A4P9Y0K8_9FUNG)

HSP 1 Score: 100 bits (248), Expect = 5.000e-22
Identity = 46/75 (61.33%), Postives = 53/75 (70.67%), Query Frame = 1
Query:   10 SPLLAICFALLLRCMVSLWPYSGRAQQPMYGDYEAQRHWMEVTTALPLHQWY--STEYWGLDYPPLIAYLVRVLG 228
            +PL+   F+LLLR    LWPYSG    PMYGDYEAQRHWME+T  LP+ QWY    +YWGLDYPPL AY+  V G
Sbjct:   60 APLVVALFSLLLRWTTGLWPYSGAGIPPMYGDYEAQRHWMELTWHLPMTQWYRYDLQYWGLDYPPLTAYVSWVCG 134          
BLAST of mRNA_A-nodosum_M_contig8434.12.2 vs. uniprot
Match: A0A4C2E6V6_9SACH (Alpha-1,3-glucosyltransferase n=4 Tax=Zygosaccharomyces TaxID=4953 RepID=A0A4C2E6V6_9SACH)

HSP 1 Score: 99.8 bits (247), Expect = 6.670e-22
Identity = 43/78 (55.13%), Postives = 58/78 (74.36%), Query Frame = 1
Query:    1 WKPSPLLAICFALLLRCMVSLWPYSGRAQQPMYGDYEAQRHWMEVTTALPLHQWY--STEYWGLDYPPLIAYLVRVLG 228
            W P  ++ I FA+++RC + L PYSG++ +PM+GD+EAQRHW+E+T  LP+ QWY    EYWGLDYPPL AY   +LG
Sbjct:   41 WLPEYII-ILFAIIIRCAIGLGPYSGQSAKPMHGDFEAQRHWLEITQHLPISQWYYFDLEYWGLDYPPLTAYHSYILG 117          
BLAST of mRNA_A-nodosum_M_contig8434.12.2 vs. uniprot
Match: A0A1R0H9K7_9FUNG (Alpha-1,3-glucosyltransferase n=1 Tax=Smittium mucronatum TaxID=133383 RepID=A0A1R0H9K7_9FUNG)

HSP 1 Score: 96.3 bits (238), Expect = 7.360e-22
Identity = 44/66 (66.67%), Postives = 51/66 (77.27%), Query Frame = 1
Query:   19 LAICFALLLRCMVSLWPYSGRAQQPMYGDYEAQRHWMEVTTALPLHQWY--STEYWGLDYPPLIAY 210
            L++ FA+ LR +V L PYSG +  PM+GDYEAQRHWME+TT LP  QWY  S EYWGLDYPPL AY
Sbjct:   75 LSVLFAVFLRWIVGLGPYSGMSVAPMFGDYEAQRHWMELTTHLPTSQWYFYSLEYWGLDYPPLTAY 140          
BLAST of mRNA_A-nodosum_M_contig8434.12.2 vs. uniprot
Match: A0A3R6XAZ2_9STRA (Alpha-1,3-glucosyltransferase n=8 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6XAZ2_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 7.530e-22
Identity = 49/94 (52.13%), Postives = 61/94 (64.89%), Query Frame = 1
Query:    4 KPSPLLAICFALLLRCMVSLWPYSGRAQQPMYGDYEAQRHWMEVTTALPLHQWY--STEYWGLDYPPLIAYLVRVLG-VRQGVRHSRTRIDGTR 276
            K    L +C ALL+R +VSL  YSG +  PMYGDYEAQRHWME+T  LP+H WY    +YWGLDYPPL AY+    G + Q V  +   +D +R
Sbjct:   32 KSGSALVLCAALLVRWLVSLHSYSGMSTPPMYGDYEAQRHWMELTYHLPVHDWYFYDLQYWGLDYPPLTAYVSYFFGYIAQFVEPALVALDTSR 125          
BLAST of mRNA_A-nodosum_M_contig8434.12.2 vs. uniprot
Match: A0A8J2SXH3_9STRA (Alpha-1,3-glucosyltransferase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SXH3_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 8.630e-22
Identity = 44/71 (61.97%), Postives = 53/71 (74.65%), Query Frame = 1
Query:   22 AICFALLLRCMVSLWPYSGRAQQPMYGDYEAQRHWMEVTTALPLHQWYS--TEYWGLDYPPLIAYLVRVLG 228
            A+   LL+R   SL PYSG    P YGDYEA RHWME+T  LPL+QWY+  TEYWGLDYPPL+AY+ ++LG
Sbjct:   73 AVALGLLVRHACSLHPYSGEGDPPRYGDYEAHRHWMEITHHLPLNQWYAYDTEYWGLDYPPLMAYIEKILG 143          
BLAST of mRNA_A-nodosum_M_contig8434.12.2 vs. uniprot
Match: W4FD49_9STRA (Alpha-1,3-glucosyltransferase n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FD49_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 1.510e-21
Identity = 49/94 (52.13%), Postives = 61/94 (64.89%), Query Frame = 1
Query:    4 KPSPLLAICFALLLRCMVSLWPYSGRAQQPMYGDYEAQRHWMEVTTALPLHQWY--STEYWGLDYPPLIAYLVRVLG-VRQGVRHSRTRIDGTR 276
            K    L +C ALL+R +VSL  YSG +  PMYGDYEAQRHWME+T  LP+H WY    +YWGLDYPPL AY+    G + Q V  +   +D +R
Sbjct:   12 KSGSALVLCAALLVRWLVSLHSYSGMSTPPMYGDYEAQRHWMELTYHLPVHDWYFYDLQYWGLDYPPLTAYVSYFFGYIAQFVEPALVALDTSR 105          
BLAST of mRNA_A-nodosum_M_contig8434.12.2 vs. uniprot
Match: A0A0J7L6S5_LASNI (Dolichyl-P-Glc:Man(9)GlcNAc(2)-PP-dolichol alpha-1,3-glucosyltransferase n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7L6S5_LASNI)

HSP 1 Score: 93.6 bits (231), Expect = 1.850e-21
Identity = 46/89 (51.69%), Postives = 55/89 (61.80%), Query Frame = 1
Query:   19 LAICFALLLRCMVSLWPYSGRAQQPMYGDYEAQRHWMEVTTALPLHQWY------STEYWGLDYPPLIAYLVRVLGVRQGVRHSRTRID 267
            L  CFA+LLRC ++   +SG  + PMYGDYEAQRHW E+T  LPL +WY        +YWGLDYPPL AY   +LG      H   RID
Sbjct:    9 LVSCFAILLRCCITHHSHSGEGKPPMYGDYEAQRHWQEITLNLPLDKWYINTTDNDLQYWGLDYPPLTAYHSLLLG------HIANRID 91          
BLAST of mRNA_A-nodosum_M_contig8434.12.2 vs. uniprot
Match: ALG6_YEAST (Dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase n=18 Tax=Saccharomyces TaxID=4930 RepID=ALG6_YEAST)

HSP 1 Score: 98.2 bits (243), Expect = 2.330e-21
Identity = 42/79 (53.16%), Postives = 57/79 (72.15%), Query Frame = 1
Query:    1 WKPSPLLAICFALLLRCMVSLWPYSGRAQQPMYGDYEAQRHWMEVTTALPLHQWY--STEYWGLDYPPLIAYLVRVLGV 231
            W P  ++ +C A++LRC + L PYSG+   P+YGD+EAQRHWME+T  LPL +WY    +YWGLDYPPL A+   +LG+
Sbjct:   36 WLPEYIIFVC-AVILRCTIGLGPYSGKGSPPLYGDFEAQRHWMEITQHLPLSKWYWYDLQYWGLDYPPLTAFHSYLLGL 113          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8434.12.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G191_ECTSI2.040e-3375.34Alpha-1,3-glucosyltransferase n=2 Tax=Ectocarpus T... [more]
A0A2R5LPK4_9ACAR1.030e-2263.24Alpha-1,3-glucosyltransferase (Fragment) n=1 Tax=O... [more]
A0A4P9Y0K8_9FUNG5.000e-2261.33Alpha-1,3-glucosyltransferase n=1 Tax=Piptocephali... [more]
A0A4C2E6V6_9SACH6.670e-2255.13Alpha-1,3-glucosyltransferase n=4 Tax=Zygosaccharo... [more]
A0A1R0H9K7_9FUNG7.360e-2266.67Alpha-1,3-glucosyltransferase n=1 Tax=Smittium muc... [more]
A0A3R6XAZ2_9STRA7.530e-2252.13Alpha-1,3-glucosyltransferase n=8 Tax=Aphanomyces ... [more]
A0A8J2SXH3_9STRA8.630e-2261.97Alpha-1,3-glucosyltransferase n=1 Tax=Pelagomonas ... [more]
W4FD49_9STRA1.510e-2152.13Alpha-1,3-glucosyltransferase n=2 Tax=Aphanomyces ... [more]
A0A0J7L6S5_LASNI1.850e-2151.69Dolichyl-P-Glc:Man(9)GlcNAc(2)-PP-dolichol alpha-1... [more]
ALG6_YEAST2.330e-2153.16Dolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-gluco... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8434contigA-nodosum_M_contig8434:24234..25377 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G191
Preferred nameALG6
PFAMsAlg6_Alg8
Model size386
Max annot lvl2759|Eukaryota
KEGG koko:K03848
KEGG ReactionR06262
KEGG Pathwayko00510,ko01100,map00510,map01100
KEGG ModuleM00055
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004583,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006091,GO:0006464,GO:0006486,GO:0006487,GO:0006488,GO:0006490,GO:0006629,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009060,GO:0009100,GO:0009101,GO:0009987,GO:0012505,GO:0015980,GO:0016020,GO:0016021,GO:0016740,GO:0016757,GO:0016758,GO:0018193,GO:0018196,GO:0018279,GO:0019538,GO:0031224,GO:0031984,GO:0032501,GO:0032502,GO:0034645,GO:0036211,GO:0040003,GO:0042175,GO:0042281,GO:0042335,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045333,GO:0046527,GO:0048856,GO:0055114,GO:0070085,GO:0071704,GO:0098827,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
Exons3
Evalue2.8e-25
EggNOG OGsKOG2575@1|root,KOG2575@2759|Eukaryota
EC2.4.1.267
Descriptiondolichyl pyrophosphate Man9GlcNAc2 alpha-1,3-glucosyltransferase activity
Cds size258
COG categoryM
CAZyGT57
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870214.1138458-UTR-A-nodosum_M_contig8434:24233..243091680870214.1138458-UTR-A-nodosum_M_contig8434:24233..24309Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig8434 24234..24309 -
1680870214.131925-UTR-A-nodosum_M_contig8434:24522..245231680870214.131925-UTR-A-nodosum_M_contig8434:24522..24523Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig8434 24523..24523 -
1680870214.4485197-UTR-A-nodosum_M_contig8434:25326..253771680870214.4485197-UTR-A-nodosum_M_contig8434:25326..25377Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig8434 25327..25377 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870214.1440248-CDS-A-nodosum_M_contig8434:24523..246651680870214.1440248-CDS-A-nodosum_M_contig8434:24523..24665Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8434 24524..24665 -
1680870214.1562726-CDS-A-nodosum_M_contig8434:25210..253261680870214.1562726-CDS-A-nodosum_M_contig8434:25210..25326Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8434 25211..25326 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8434.12.2prot_A-nodosum_M_contig8434.12.2Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig8434 24524..25326 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig8434.12.2

>prot_A-nodosum_M_contig8434.12.2 ID=prot_A-nodosum_M_contig8434.12.2|Name=mRNA_A-nodosum_M_contig8434.12.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=86bp
MVSLWPYSGRAQQPMYGDYEAQRHWMEVTTALPLHQWYSTEYWGLDYPPL
IAYLVRVLGVRQGVRHSRTRIDGTRTISRVRNTKP*
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mRNA from alignment at A-nodosum_M_contig8434:24234..25377-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig8434.12.2 ID=mRNA_A-nodosum_M_contig8434.12.2|Name=mRNA_A-nodosum_M_contig8434.12.2|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1144bp|location=Sequence derived from alignment at A-nodosum_M_contig8434:24234..25377- (Ascophyllum nodosum dioecious)
TGGAAGCCAAGTCCTCTGCTTGCTATATGTTTTGCTCTTCTGCTGCGGTG CATGGTTTCCTTGTGGCCGTACTCCGGACGGGCGCAGCAACCCATGTACG GAGATTATGAAGCTCAGCGGCACTGGATGGAGGTCACCACCGCGTTGCCG CTGCATCAATGGTACAGGTAAAAGCCACCAGAAGTACTTGATGTTTATGC TGGAATCTTATGGCGCAGGCATACCATATACATCGTCGGTTTGCTGTCGT GCTCTTTTCCAGAAACCCTGCGCCTTCTTTGCCCAACACACCCGGTTGAT GCCCACAGTCTCCTATTTAGATGTGATGACCATACATAGAGCTACTATAA AATACTGTACATACCTGGTACGATACAACTGTACATACCAAAATCTATCG CAACCGATGACATCTTACCCCACGCGGGCACTTGATACACCTCAAGAGTC TTTGGGCACGTTTATTCCTCATGAAGACGACTGCTATGATGCTGGAAGCG TACAAGTAGAAGCCTGTCAGATTCATTCAAAGTCTCCTTGCAGACAGACA CATGGGCAACAGAAGGAGAATCAAATATATGGTGATATGCAGCTTTGAAC GACTATTAATAGTCCATTGCTTGGTACAGTACAAATAAACAGTACAGCAT ATAAAATTGCTCCGCATTCTGGACTACGCATTGTCGAACGTCATTCCAGG TTCGACCTTGAGTACGGAGTACTGGGGACTGGACTATCCGCCCTTGATAG CGTACCTGGTACGTGTCTTGGGTGTGCGGCAAGGCGTCCGCCATAGTCGA ACCCGCATCGATGGAACTCGGACGATCTCGCGGGTACGAAACACCAAGCC ATAAGGTGACCCCCAAAGCTGTTTAGGCGTGGCAAACTCATTATTCAAGG ATCACCGGAATCCAGCCGGTCACGTCAGTGTAATACAGTACGGCATGCAC TCTGTACATGAAACACGAGATGCGATTTCAGGTGCGCTCATCAAAGTTCG ATGGAGTGAGAATAGTGAGAATGATAGGCCAGCCTCTAAATAAACCATTA CCATTTGCGCGCTTGCAGGCATTTATGCGACTGACGGTGTTGGTGCTTGA TCTCGGGGTGTTCTTTGGGGCGGCTGTGGCTCTCGCCCACAGGT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig8434:24234..25377-

>mRNA_A-nodosum_M_contig8434.12.2 ID=mRNA_A-nodosum_M_contig8434.12.2|Name=mRNA_A-nodosum_M_contig8434.12.2|organism=Ascophyllum nodosum dioecious|type=CDS|length=258bp|location=Sequence derived from alignment at A-nodosum_M_contig8434:24234..25377- (Ascophyllum nodosum dioecious)
ATGGTTTCCTTGTGGCCGTACTCCGGACGGGCGCAGCAACCCATGTACGG
AGATTATGAAGCTCAGCGGCACTGGATGGAGGTCACCACCGCGTTGCCGC
TGCATCAATGGTACAGTACGGAGTACTGGGGACTGGACTATCCGCCCTTG
ATAGCGTACCTGGTACGTGTCTTGGGTGTGCGGCAAGGCGTCCGCCATAG
TCGAACCCGCATCGATGGAACTCGGACGATCTCGCGGGTACGAAACACCA
AGCCATAA
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