mRNA_A-nodosum_M_contig8432.5.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig8432.5.1
Unique NamemRNA_A-nodosum_M_contig8432.5.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig8432.5.1 vs. uniprot
Match: A0A672U080_STRHB (Ubiquitinyl hydrolase 1 n=7 Tax=Neognathae TaxID=8825 RepID=A0A672U080_STRHB)

HSP 1 Score: 85.5 bits (210), Expect = 5.340e-15
Identity = 73/246 (29.67%), Postives = 111/246 (45.12%), Query Frame = 1 
Query:  166 AEQLNWTPPGWKS--PNTMRLWPLKNGGKGRCIFHSVSVALWGCDDDGEMLETMTETVLEQ--DRDLLFPIYKKQFPKQTEEEARKFWDAKI------------VKRTGKGG-----------RTQFNYFILANVLRRPIITVSDKYRRDRDLSPIGTAGMGSKIFLPTLLEPGDCSKTPLVLGVTWTKRIAHSSALAGVSGQLTH-----VKLCDKEGKRFPIWY----GKRRGWMKDVSDYLSI 795
            A +LNW    W +  P+  RL PL   G G C+ H+ S+ +WG  D   ML     T++++  +R+ L   ++ Q  +Q +EE +K W+  I               +G GG             +F+ F+LA+VL+RPI+ V+D   RD           G  I+LP  +    C ++PLVL        AH SAL  +  + T      + L D E K  P+ +    GK   W KD SD + +
Sbjct:  170 AGRLNW----WANVDPSCQRLLPLATTGDGNCLLHAASLGMWGFHDRDLMLRKSLYTLMDKGVEREALKRRWRWQQTQQNKEEWQKEWNELIKLASSEPRVHYGTNGSGCGGVESSEEPVYESLEEFHVFVLAHVLKRPIVVVADTMLRDSGGEAFAPIPFGG-IYLPLEVPANKCHRSPLVLAYDQ----AHFSALVSMEQKETTKDQAVIPLTDSEHKLLPVHFAVDPGKEWQWGKDDSDNVKL 406
[Close]
BLAST of mRNA_A-nodosum_M_contig8432.5.1 vs. uniprot
Match: K7FP60_PELSI (Ubiquitinyl hydrolase 1 n=27 Tax=Cryptodira TaxID=8464 RepID=K7FP60_PELSI)

HSP 1 Score: 83.2 bits (204), Expect = 3.250e-14
Identity = 73/250 (29.20%), Postives = 110/250 (44.00%), Query Frame = 1 
Query:  166 AEQLNWTPPGWKS--PNTMRLWPLKNGGKGRCIFHSVSVALWGCDDDGEMLETMTETVLEQ--DRDLLFPIYK---KQFPKQTEEEARKFWDAKI------------------------VKRTGKGGRTQFNYFILANVLRRPIITVSDKYRRDRDLSPIGTAGMGSKIFLPTLLEPGDCSKTPLVLGVTWTKRIAHSSALAGVSGQ-----LTHVKLCDKEGKRFPIWY----GKRRGWMKDVSDYLSI 795
            A +LNW    W +  P+  RL PL   G G C+ H+ S+ +WG  D   ML     T++++  +R+ L   ++    Q  K+TEEE +K W+  I                         K T K    +F+ F+LA+VL+RP++ V+D   RD           G  I+LP  +    C ++PLVL        AH SAL  +  +        + L D E K  P+ +    GK   W KD SD + +
Sbjct:  181 AGRLNW----WANVDPSCQRLLPLATTGDGNCLLHAASLGMWGFHDRDLMLRKSLYTLMDKGVEREALKRRWRWQQTQQNKETEEEWQKEWNELIKLASSEPRMHYGTNGGSCGGINVSAKATMKSLLEEFHVFVLAHVLKRPVVVVADTMLRDSGGEAFAPIPFGG-IYLPLEVPANKCHRSPLVLAYDQ----AHFSALVSMEQKEPTKDQAVIPLTDSEHKLLPVHFAVDPGKEWEWGKDDSDNVKL 421
[Close]
BLAST of mRNA_A-nodosum_M_contig8432.5.1 vs. uniprot
Match: A0A851CF82_CALVR (Ubiquitinyl hydrolase 1 (Fragment) n=1 Tax=Calyptomena viridis TaxID=135972 RepID=A0A851CF82_CALVR)

HSP 1 Score: 82.4 bits (202), Expect = 4.650e-14
Identity = 76/250 (30.40%), Postives = 110/250 (44.00%), Query Frame = 1 
Query:  172 QLNWTPPGWKS--PNTMRLWPLKNGGKGRCIFHSVSVALWGCDDDGEMLETMTETVLEQ--DRDLLFPIYKKQFPKQ--------TEEEARKFWDAKIVKRT-------GKGGRT--------------QFNYFILANVLRRPIITVSDKYRRDRDLSPIGTAGMGSKIFLPTLLEPGDCSKTPLVLGVTWTKRIAHSSALAGVSGQLTH-----VKLCDKEGKRFPIWY----GKRRGWMKDVSDYLSI 795
            +LNW    W +  P+  RL PL   G G C+ H+ S+ +WG  D   ML     T+LE+  +R+ L   ++ Q  +Q        TEEE +K W+  I   +       G GG                +F+ F+LA+VLRRPI+ V+D   RD           G  I+LP  +    C ++PLVL        AH SAL  +  +        + L D E K  P+ +    GK   W KD SD + +
Sbjct:    2 RLNW----WVTVDPSCQRLLPLATTGDGNCLLHAASLGMWGFHDRDLMLRKSLYTLLEKGAEREALRRRWRWQQTQQNKESGLVYTEEEWQKEWNELIKLASSEPRVHYGNGGACGVESSEEPVYESLEEFHVFVLAHVLRRPIVVVADTMLRDSGGEAFAPIPFGG-IYLPLEVPANKCHRSPLVLAYDQ----AHFSALVSMEQKENTKDQAVIPLTDSEHKLLPVHFAVDPGKEWQWGKDDSDNVKL 242
[Close]
BLAST of mRNA_A-nodosum_M_contig8432.5.1 vs. uniprot
Match: A0A7L1M6N5_BOMGA (Ubiquitinyl hydrolase 1 (Fragment) n=1 Tax=Bombycilla garrulus TaxID=125297 RepID=A0A7L1M6N5_BOMGA)

HSP 1 Score: 82.4 bits (202), Expect = 5.070e-14
Identity = 74/254 (29.13%), Postives = 112/254 (44.09%), Query Frame = 1 
Query:  166 AEQLNWTPPGWKS--PNTMRLWPLKNGGKGRCIFHSVSVALWGCDDDGEMLETMTETVLEQ--DRDLLFPIYKKQFPKQ--------TEEEARKFW---------DAKIVKRTGKGG--------------RTQFNYFILANVLRRPIITVSDKYRRDRDLSPIGTAGMGSKIFLPTLLEPGDCSKTPLVLGVTWTKRIAHSSALAGVSGQLTH-----VKLCDKEGKRFPIWY----GKRRGWMKDVSDYLSI 795
            A +LNW    W +  P+  RL PL   G G C+ H+ S+ +WG  D   ML     T++++  +R+ L   ++ Q  +Q        TEEE +K W         + ++   T  GG                +F+ F+LA+VL+RPI+ V+D   RD           G  I+LP  +    C ++PLVL        AH SAL  +  +        + L D E K  P+ +    GK   W KD SDY+ +
Sbjct:   73 AGRLNW----WATVDPSCQRLLPLATTGDGNCLLHAASLGMWGFHDRDLMLRKSLYTLMDKGVEREALRRRWRWQQTQQNKESGLVYTEEEWQKEWNELIKLASSEPRVHYGTNGGGCGGVESSEEPVYESLEEFHVFVLAHVLKRPIVVVADTMLRDSGGEAFAPIPFGG-IYLPLEVPANKCHRSPLVLAYDQ----AHFSALVSMEQKENTKDQAVIPLTDSEHKLLPVHFAVDPGKEWQWGKDDSDYVKL 317
[Close]
BLAST of mRNA_A-nodosum_M_contig8432.5.1 vs. uniprot
Match: UPI00112CB62E (OTU domain-containing protein 7B isoform X1 n=2 Tax=Rhinatrema bivittatum TaxID=194408 RepID=UPI00112CB62E)

HSP 1 Score: 82.4 bits (202), Expect = 5.890e-14
Identity = 82/307 (26.71%), Postives = 139/307 (45.28%), Query Frame = 1 
Query:   19 ASKDMMKTPMIRGELPLVPTDLST--STFMLPAKEDIRRKNYFVPKIDKLLAEQLNWTPPGWK--SPNTMRLWPLKNGGKGRCIFHSVSVALWGCDDDGEMLETMTETVLEQ--DRDLLFPIYKKQFPKQ--------TEEEARKFWDAKIVKRT-------GKGGRT----------------QFNYFILANVLRRPIITVSDKYRRDRDLSPIGTAGMGSKIFLPTLLEPGDCSKTPLVLGVTWTKRIAHSSALAGV-----SGQLTHVKLCDKEGKRFPIWY----GKRRGWMKDVSDYLSIEK 801
            +S+ +++TP+   +LP    DL+     F    + D+  ++  V  +++  A++LNW    W   +PN  RL PL   G G C+ H+ S+ +WG  D   ML     T++E+  +++ L   ++ Q  +Q        TEEE +K W+  I   +       G  G                  +F+ F+LA+VL+RP++ V+D   RD           G  I+LP  +    C ++PLVL        AH SAL  +     +G+   + + D E K  P+ +    GK   W KD +D + + +
Sbjct:  130 SSEHLLETPICTFQLP----DLTVYRDDFRSFIERDLIEQSMLV-ALEQ--ADRLNW----WTRVNPNCQRLLPLATTGDGNCLLHAASLGMWGFHDRDLMLRKSLYTLMEKGVEKEALKRRWRWQQTQQNKESGLVYTEEEWQKEWNELIKLASSEPRMHYGTNGSNCAGTESSEEPVYESLEEFHVFVLAHVLKRPVVVVADTMLRDSGGEAFAPIPFGG-IYLPLEVPANKCHQSPLVLAYDQ----AHFSALVSMEQKEPTGEQAVIPMTDSEHKLLPVHFAVDPGKDWEWGKDDADNVKLAR 420
[Close]
BLAST of mRNA_A-nodosum_M_contig8432.5.1 vs. uniprot
Match: A0A8C6YYX2_NOTPE (Ubiquitinyl hydrolase 1 n=2 Tax=Nothoprocta perdicaria TaxID=30464 RepID=A0A8C6YYX2_NOTPE)

HSP 1 Score: 82.4 bits (202), Expect = 5.920e-14
Identity = 71/246 (28.86%), Postives = 110/246 (44.72%), Query Frame = 1 
Query:  166 AEQLNWTPPGWKS--PNTMRLWPLKNGGKGRCIFHSVSVALWGCDDDGEMLETMTETVLEQ--DRDLLFPIYKKQFPKQTEEEARKFWDAKIVKRTGK--------GGRT---------------QFNYFILANVLRRPIITVSDKYRRDRDLSPIGTAGMGSKIFLPTLLEPGDCSKTPLVLGVTWTKRIAHSSALAGVSGQ-----LTHVKLCDKEGKRFPIWY----GKRRGWMKDVSDYLSI 795
            A +LNW    W +  P+  RL PL   G G C+ H+ S+ +WG  D   ML     T++++  +R+ L   ++ Q  +Q +EE +K W+  I   + +        GG                 +F+ F+LA+VL+RPI+ V+D   RD           G  I+LP  +    C ++PLVL        AH SAL  +  +        + L D E K  P+ +    GK   W KD SD + +
Sbjct:  201 AGRLNW----WAAVDPSCQRLLPLATTGDGNCLLHAASLGMWGFHDRDLMLRKSLYTLMDKGVEREALKRRWRWQQTQQNKEEWQKEWNELIKLASSEPRVHYGTNGGNCGGVESSEEPVYESLEEFHVFVLAHVLKRPIVVVADTMLRDSGGEAFAPIPFGG-IYLPLEVPANKCHRSPLVLAYDQ----AHFSALVSMEQKEPTKDQAVIPLTDSEHKLLPVHFAVDPGKEWQWGKDDSDNVKL 437
[Close]
BLAST of mRNA_A-nodosum_M_contig8432.5.1 vs. uniprot
Match: A0A7K5Q804_9CORV (Ubiquitinyl hydrolase 1 (Fragment) n=2 Tax=Neognathae TaxID=8825 RepID=A0A7K5Q804_9CORV)

HSP 1 Score: 80.9 bits (198), Expect = 7.870e-14
Identity = 75/254 (29.53%), Postives = 111/254 (43.70%), Query Frame = 1 
Query:  166 AEQLNWTPPGWKS--PNTMRLWPLKNGGKGRCIFHSVSVALWGCDDDGEMLETMTETVLEQ--DRDLLFPIYKKQFPKQ--------TEEEARKFWDAKI--------VKRTGKGGRT---------------QFNYFILANVLRRPIITVSDKYRRDRDLSPIGTAGMGSKIFLPTLLEPGDCSKTPLVLGVTWTKRIAHSSALAGVSGQLTH-----VKLCDKEGKRFPIWY----GKRRGWMKDVSDYLSI 795
            A +LNW    W +  P+  RL PL   G G C+ H+ S+ +WG  D   ML     T++++  +R+ L   ++ Q  +Q        TEEE +K WD  I        V  +  GG                 +F+ F+LA+VL+RPI+ V+D   RD           G  I+LP  +    C ++PLVL        AH SAL  +  +        + L D E K  P+ +    GK   W KD SD + +
Sbjct:   73 AGRLNW----WVTVDPSCQRLLPLATTGDGNCLLHAASLGMWGFHDRDLMLRKSLYTLMDKGVEREALRRRWRWQQTQQNKESGLVYTEEEWQKEWDELIKLASSEPRVHYSTNGGSCSGVESSEEPVYESLEEFHVFVLAHVLKRPIVVVADTMLRDSGGEAFAPIPFGG-IYLPLEVPANKCHRSPLVLAYDQ----AHFSALVSMEHKENTKDQAVIPLTDSEHKLLPVHFAVDPGKEWQWGKDDSDNVKL 317
[Close]
BLAST of mRNA_A-nodosum_M_contig8432.5.1 vs. uniprot
Match: A0A8D0FM60_STROC (Ubiquitinyl hydrolase 1 n=2 Tax=Neognathae TaxID=8825 RepID=A0A8D0FM60_STROC)

HSP 1 Score: 81.6 bits (200), Expect = 1.070e-13
Identity = 70/246 (28.46%), Postives = 110/246 (44.72%), Query Frame = 1 
Query:  166 AEQLNWTPPGWKS--PNTMRLWPLKNGGKGRCIFHSVSVALWGCDDDGEMLETMTETVLEQ--DRDLLFPIYKKQFPKQTEEEARKFW---------DAKIVKRTGKGG--------------RTQFNYFILANVLRRPIITVSDKYRRDRDLSPIGTAGMGSKIFLPTLLEPGDCSKTPLVLGVTWTKRIAHSSALAGVSGQ-----LTHVKLCDKEGKRFPIWY----GKRRGWMKDVSDYLSI 795
            A +LNW    W +  P+  RL PL   G G C+ H+ S+ +WG  D   ML     T++++  +R+ L   ++ Q  +Q +EE +K W         + ++   T  GG                +F+ F+LA+VL+RPI+ V+D   RD           G  I+LP  +    C ++PLVL        AH SAL  +  +        + L D E K  P+ +    G+   W KD SD + +
Sbjct:  178 AGRLNW----WANVDPSCQRLLPLATTGDGNCLLHAASLGMWGFHDRDLMLRKSLYTLMDKGVEREALKRRWRWQQTQQNKEEWQKEWNELIKLASSEPRVHYGTNGGGCGGVESSEEPVYESLEEFHVFVLAHVLKRPIVVVADTMLRDSGGEAFAPIPFGG-IYLPLEVPANKCHRSPLVLAYDQ----AHFSALVSMEQKEPAKDQAVIPLTDSEHKLLPVHFAVDPGREWQWGKDDSDNVKL 414
[Close]
BLAST of mRNA_A-nodosum_M_contig8432.5.1 vs. uniprot
Match: A0A3Q3QK01_MONAL (Ubiquitinyl hydrolase 1 n=1 Tax=Monopterus albus TaxID=43700 RepID=A0A3Q3QK01_MONAL)

HSP 1 Score: 81.3 bits (199), Expect = 1.400e-13
Identity = 73/246 (29.67%), Postives = 108/246 (43.90%), Query Frame = 1 
Query:  166 AEQLNWTPPGWKS--PNTMRLWPLKNGGKGRCIFHSVSVALWGCDDDGEMLETMTETVLEQ--DRDLLFPIYKKQFPKQ--------TEEEARKFWDAKIVKRTGKGGRT--------------QFNYFILANVLRRPIITVSDKYRRDRDLSPIGTAGMGSKIFLPTLLEPGDCSKTPLVLGVTWTKRIAHSSALA------GVSGQLTHVKLCDKEGKRFPIWY----GKRRGWMKDVSDYLSI 795
            A +LNW    W    PN   L PL   G G C+ H+ S+ +WG  D   ML      +++   +R+ L   ++ Q  +Q        TEEE +K W+ +++K      +T              +F+ F+LA+VLRRPI+ V+D   RD           G  I+LP  +    C ++PLVL        AH SAL       G   Q   + L D E K  P+ +    GK   W KD +D + +
Sbjct:  159 AGRLNW----WTKVVPNCQNLLPLATSGDGNCLLHAASLGMWGFHDRDLMLRKSLYALMDHGLEREALKRRWRWQQTQQNKESGLVYTEEEWQKEWN-ELLKLASNLAQTMAESSDEPVYESLEEFHVFVLAHVLRRPIVVVADTMLRDSGGEAFAPIPFGG-IYLPLEVPAAKCHRSPLVLAYDQ----AHFSALVSMEQKDGSKEQAVVIPLTDSEHKMLPLHFAVDPGKDWEWGKDDTDNVML 394
[Close]
BLAST of mRNA_A-nodosum_M_contig8432.5.1 vs. uniprot
Match: A0A6H5JBZ3_9PHAE (OTU domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBZ3_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 2.140e-13
Identity = 40/100 (40.00%), Postives = 61/100 (61.00%), Query Frame = 1 
Query:  457 TQFNYFILANVLRRPIITVSDKYRRDRDLSPIGTAGMGSKIFLPTLLEPGDCSKTPLVLGVTWTK--RIAHSSALAGVSGQLTHVKLCDKEGKRFPIWYG 750
            + F+ F+LANVLRRPI+   D++ R R+  P   + +   ++LPTL++P  C K P+ +G T     ++ H +AL GV G+L H+ L D+ G   PI YG
Sbjct:  126 SSFHAFVLANVLRRPILVYGDRFVRGRNGEPYAPSDVRG-VYLPTLVDPDVCYKLPIAVGYTCVTVGKVGHFTALVGVDGELRHLPLVDEHGDGLPIRYG 224
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8432.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A672U080_STRHB5.340e-1529.67Ubiquitinyl hydrolase 1 n=7 Tax=Neognathae TaxID=8... [more]
K7FP60_PELSI3.250e-1429.20Ubiquitinyl hydrolase 1 n=27 Tax=Cryptodira TaxID=... [more]
A0A851CF82_CALVR4.650e-1430.40Ubiquitinyl hydrolase 1 (Fragment) n=1 Tax=Calypto... [more]
A0A7L1M6N5_BOMGA5.070e-1429.13Ubiquitinyl hydrolase 1 (Fragment) n=1 Tax=Bombyci... [more]
UPI00112CB62E5.890e-1426.71OTU domain-containing protein 7B isoform X1 n=2 Ta... [more]
A0A8C6YYX2_NOTPE5.920e-1428.86Ubiquitinyl hydrolase 1 n=2 Tax=Nothoprocta perdic... [more]
A0A7K5Q804_9CORV7.870e-1429.53Ubiquitinyl hydrolase 1 (Fragment) n=2 Tax=Neognat... [more]
A0A8D0FM60_STROC1.070e-1328.46Ubiquitinyl hydrolase 1 n=2 Tax=Neognathae TaxID=8... [more]
A0A3Q3QK01_MONAL1.400e-1329.67Ubiquitinyl hydrolase 1 n=1 Tax=Monopterus albus T... [more]
A0A6H5JBZ3_9PHAE2.140e-1340.00OTU domain-containing protein n=1 Tax=Ectocarpus s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8432contigA-nodosum_M_contig8432:11996..17900 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G8I7
Preferred nameZRANB1
PFAMsOTU,zf-RanBP
Model size847
Max annot lvl2759|Eukaryota
KEGG koko:K11860,ko:K11862
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004843,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006928,GO:0006996,GO:0007010,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009056,GO:0009057,GO:0009653,GO:0009966,GO:0009967,GO:0009987,GO:0010646,GO:0010647,GO:0016043,GO:0016477,GO:0016579,GO:0016787,GO:0019538,GO:0019783,GO:0019941,GO:0021551,GO:0022603,GO:0022604,GO:0023051,GO:0023056,GO:0030111,GO:0030163,GO:0030177,GO:0031593,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0035523,GO:0036211,GO:0036459,GO:0040011,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0048513,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048731,GO:0048856,GO:0048870,GO:0050789,GO:0050793,GO:0050794,GO:0051128,GO:0051179,GO:0051603,GO:0051674,GO:0060322,GO:0060828,GO:0065007,GO:0070011,GO:0070013,GO:0070530,GO:0070536,GO:0070646,GO:0070647,GO:0071704,GO:0071840,GO:0071947,GO:0090263,GO:0101005,GO:0140030,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1990168
Exons8
Evalue1.24e-20
EggNOG OGsKOG4345@1|root,KOG4345@2759|Eukaryota
EC3.4.19.12
Descriptionprotein deubiquitination involved in ubiquitin-dependent protein catabolic process
Cds size816
COG categoryO
BRITEko00000,ko01000,ko01002,ko04121
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8432.5.1prot_A-nodosum_M_contig8432.5.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig8432 11996..17870 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870212.3454444-CDS-A-nodosum_M_contig8432:11995..120271680870212.3454444-CDS-A-nodosum_M_contig8432:11995..12027Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8432 11996..12027 -
1680870212.3588812-CDS-A-nodosum_M_contig8432:12864..129351680870212.3588812-CDS-A-nodosum_M_contig8432:12864..12935Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8432 12865..12935 -
1680870212.3691487-CDS-A-nodosum_M_contig8432:13649..138171680870212.3691487-CDS-A-nodosum_M_contig8432:13649..13817Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8432 13650..13817 -
1680870212.3796024-CDS-A-nodosum_M_contig8432:15477..156531680870212.3796024-CDS-A-nodosum_M_contig8432:15477..15653Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8432 15478..15653 -
1680870212.3977892-CDS-A-nodosum_M_contig8432:16353..164461680870212.3977892-CDS-A-nodosum_M_contig8432:16353..16446Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8432 16354..16446 -
1680870212.4106429-CDS-A-nodosum_M_contig8432:16932..170261680870212.4106429-CDS-A-nodosum_M_contig8432:16932..17026Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8432 16933..17026 -
1680870212.426242-CDS-A-nodosum_M_contig8432:17490..176121680870212.426242-CDS-A-nodosum_M_contig8432:17490..17612Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8432 17491..17612 -
1680870212.4431067-CDS-A-nodosum_M_contig8432:17810..178701680870212.4431067-CDS-A-nodosum_M_contig8432:17810..17870Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8432 17811..17870 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870212.4542038-UTR-A-nodosum_M_contig8432:17870..179001680870212.4542038-UTR-A-nodosum_M_contig8432:17870..17900Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig8432 17871..17900 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig8432.5.1

>prot_A-nodosum_M_contig8432.5.1 ID=prot_A-nodosum_M_contig8432.5.1|Name=mRNA_A-nodosum_M_contig8432.5.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=272bp
MMKTPMIRGELPLVPTDLSTSTFMLPAKEDIRRKNYFVPKIDKLLAEQLN
WTPPGWKSPNTMRLWPLKNGGKGRCIFHSVSVALWGCDDDGEMLETMTET
VLEQDRDLLFPIYKKQFPKQTEEEARKFWDAKIVKRTGKGGRTQFNYFIL
ANVLRRPIITVSDKYRRDRDLSPIGTAGMGSKIFLPTLLEPGDCSKTPLV
LGVTWTKRIAHSSALAGVSGQLTHVKLCDKEGKRFPIWYGKRRGWMKDVS
DYLSIEKHAADGKTYWFCRMDQ
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mRNA from alignment at A-nodosum_M_contig8432:11996..17900-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig8432.5.1 ID=mRNA_A-nodosum_M_contig8432.5.1|Name=mRNA_A-nodosum_M_contig8432.5.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=5905bp|location=Sequence derived from alignment at A-nodosum_M_contig8432:11996..17900- (Ascophyllum nodosum dioecious)
CAGCTGTCGCTGGTACTCGCATCAAAAGACATGATGAAAACGCCCATGAT
CCGGGGGGAGTTGCCTTTGGTCCCCACGGACTTGAGCACGGTGAGGGGTG
AACATCGTAGGTCGAAGATTGGGACTGGCCAGAGCCTTGGCAGCAACTCT
CGAGGAGCTCGGGGAATCTATGTGTTGACGAGTTTATCTGTTAGAAATTG
AAGAGAGACCAACCCACAAAGGTGTGCGTGCATGACATGACACCCTCCGC
TGCTATCGATCTGTACGTCAATCCGTGTTTCGCCTCAGAGCACGTTCATG
CTGCCGGCGAAGGAGGACATTCGTCGGAAAAACTACTTTGTACCGAAGAT
CGATAAGCTCCTTGCCGAGCAGCTGAACTGGACTCCACCGGGGTGGAAGT
CCCCCAACACGTGCGGCAGCCTCTCGCATGCTCCGATTTGCACATCATAC
ATACCGTACTGTACCGTACCGCTCCATTAACAGTGTATGTTTTCGTGTGT
GTTTGTCTTGTCTCCATCAACAGTGCTTTTTCGACGAATGACCCAAGCCC
CCAAGGGAATTAATTACGCCAGTGTGGTCGATTGCTCCTCACCAGCCCAT
CCACCCACCCCCACTGCAGTTTCATGAATACAGTTACAGTTACAGTACAG
TACAGTACAGTAGTTACAGTTGCATTTTGTATTTTTCAGTTTTAGCAAGA
AGCTCGATCGCAACGACTCGATCAACGTTCAACGTACCCATTCCCTCCGT
CTCCGTCTCCTCTCCATGCCTTTCTTGTCTCCTATATTATATACCCTGCC
GTATCGTACCTCACCCCACCATTACTTACCGTATCCTGTTTACCGTACCG
TACCGTACCGTACCGAGAAAGCAGGATGCGACTGTGGCCTTTAAAAAACG
GCGGTAAAGGGCGGTGCATCTTCCACTCCGTGTCGGTAGCCCTCTGGGGG
TGCGACGACGACGGAGAAGTGAGTGGACAGATATTGCGCGCCATCCCACC
GTTCGTACGAGTATCATATTAATAGCAATACAAGAGTGGCGATTTACAGA
TTTCCTGACATCGTTTTCCTGACGGAATTGGTTGGTGGGGATAAACGCTA
AAAACTAAAAGTCCGTAACTGTAATTTTCAGGTAATTTCCTAGAACTCGT
AGGCGTCCATTCCGGGGTTGCGAAAGTATTGTGCTGCAGCTAATACTGCA
CAATCGAAGCAGTCAGAGTAACACGATGTACAGCACCTGGTATAGTATAC
TGTAATCTTGTAATCTCTCTATATACTTGAATATTACTATTAAATAGTGG
TTTGTTTTGGGATCGTGAGAGGTCCGCGGGTACTTCGCGATCTGAACAAT
GCCGTTCTTTTGGCTTCAAGGCTACTGTATCCTATCCTATCCTATCCTAT
CCTATCCTATCCTATCCTAACGTTACACTGTTACATTACACAATACTCGC
ACAGATGCTGGAGACGATGACGGAGACCGTGCTGGAGCAAGACCGCGATC
TCCTGTTTCCGATTTATAAGAAGCAATTCCCCAAGCAGACAGAAGAGGCG
AGCCGTAATGTAGTCTTAATATTAAATATCGCCTGGTATTAATTATTACT
AGTTGTTGTAAAGTGCTCATTAGACCTATTAGAGCTATTAATAGTGGTGT
ACTGTACTCTAGATAGAGCTATTTATAATACATTATGTTACTATTACTAC
AGTATCATTATCAATGTTAATAGTGGTGTACTGTAATTTTTTTTCTACCT
TGTGACCACGGGCTGGATTTTTGACATCGGCTTATTAATACCAAGTATGT
GAGAAATCAATTCAAATTCAATTCAAATCAATCAATCAATTGCAGTAGTC
TATAAATAGTACTGTAGTCTAGTCTAGTCTAGCCTAGTCTAATCATACAG
CAAACAGTATGTACTCTAATCTAGTAACTCTAGTGGATGATGCTTTCACA
GTATTATAGTCTACTTATCATACCGATATTAGTTGGACAATGCTGTACCT
GGGATAGGCTCTAGTGTAGTACCAGGTATAGTATAGTATAATATAGTTTA
GTATAGCATACGGTCATCTGATCATGTGCAACACCGTAGTAACTCAAGAA
AAAAGGACAAACTAACAACTCGCACAGGCTATAGCTCTAGTCTATAGACC
TACTAATATTAATAGTCTAATATGTTGAAACAAATACGGATTGTACTGAC
TGTACAGTACTCGGCACTGGTATGTAACGTGGCGCTCGCTCGCTCAGGAG
GCACGGAAGTTCTGGGATGCGAAGATCGTGAAGAGGACTGGGAAGGGTGG
CCGCACTCAGTTCAACTACTTCATCCTGGCTAATGTCTTAAGGAGGCCAA
TCATCACGGTCTCCGACAAATACCGCCGAGATCGCGATCTTAGCCCCATT
GGCACTGCCGGAATGGGTTCCAAGTGAGAAACGCCTACTCGTGTAATACT
AATACTAATACTACAGCAGTAGTCTACTACCGCATTACTCACTGTCGATG
TACCTTCTTCGCCACCCACCCACGTGTGTAAATGTCTACCTGGTAGACTA
CTGTTATACGACTAGACTAACAATACATAAATAGATAATAGTCACCGCCG
GTACTTTCAACATGCCCACTTGATACCAATAGTGGGTGTGGGAAAGCGAG
GCGAATATCAATTGGTCCATGGTGACCTGCCAAGGCAGCACTCGTTCGGA
ACTACCTTGAGGTTTACTGGCTGTGCCGGCGGACTCTCGACAGTGAACGC
CATCGGTACGCAATTGCGTGACCCGATAAACTCGGGAGGAATCCCGTAAG
TAAGCACCAGATTCAGCCTGAGTATGGAGATGAGCAGGCTGACGCGGGAC
GAGACGGCTGAATTCGACTCGCGAGACCAAATTTTCAGGCACGCACGGGG
ACAGGGGAATATTTATTTTCCCTGTTCAGCTGACCACGAGCAGGATTGAC
AACCTTACCCCGGTTGACCCATACTCTGCTATATGTGATGACCATACATA
CATACATACATAACATACATACGGTTGTAGACTACTCGTACCACAGCTCT
ACTCCGCCAGTCTACTCTTATTCACTCTATTAATATTAATAGTCTAATTT
GCTAGAATTAACTCGAATCTATATTAGTAGTCGATACTCTACAGTATGAC
ACTACGGTACAATACTTGTGTAACGTGTGGTGGAGCTGTGTTGTACTATT
AATAATAATATTAATATTAATATGGAGATATTTCACCGTTGTACTATTAC
TATTACTATTACTACGTACAGTATCCGACTCTCACACTTGGCGATGAATG
TCTCATACCAGTAGTCTAGTCTATAGTATATAGACTAAAGCTGCAGTAGT
GTTGTAGAGCTATTATGTATAGAGCTTTTTTACACCCATCTTCTAGAGGA
GAGCTATTATAGAGGAAACCTACCAGCACAGAAAATGATTAGGTATGTTT
ACAGGTATTAAGAGTGAGTGGACTTTGTATCTATTCCTATTCCTTTTCCT
ATTACTATTACTAATACTAATAGTAATACTAATATAATACTACTACTATT
ACTATTACTACTACTATTACTGTTACTACGTACAGCAGTACTTATTCCGA
TTCTCACTCTTGTCGGTCGATCGCTCCGATTTTTGTCTCAAGTAGACTAG
ACTAAAGCTATTATTTTGTGTTTGTGTTTGTGTATGCTTTTTTCTTGTTT
TTCGCCAAACTTGTCAAAACAACGCTTCTCGAACACGCCCTCCCCGCTCC
CCTCCCGGAAAATAGCAATCGCACTGAAATCCTCCCACCTCTCTGGATGT
TTCCTATTATTATTAATAGGGCTGTTGCAGTAATAGGGCTATTGCAGTAA
TAGGGCTACTACTTGTATTACTATAATACAGGGACTCTATCCTTGAAAAT
GAAGTTACACTGCATTATTATATTATAATATGATACGTAGTAGCGTATTT
TTTTCCTTCAGCCAGTACCAGTATATTTAATAGTATGATACTGTAAGTTA
TTCAGCGCTCGAAATTTCTTGAGTCACGGTACACTGCGAATAGTCTAAGC
AATACAGTATGCACCTCTTTTCTCCGATTTCAGGATCTTCCTGCCGACAT
TGCTCGAGCCGGGGGACTGCTCCAAAACCCCGCTAGTGCTTGGCGTGACG
TGGACAAAACGAATTGCTCACTCGAGCGCCCTCGCGGGGGTTTCTGGGCA
GCTCACGCACGTCAAGCTTTGTGATAAGGAGGGAAAACGATTTCCTATTT
GGTGAGTCATCATTTTAGTTGGGTTGTTCTCGGCTTCGTTGTTGGAAACC
AGTAGCCAGTAGCCAGTAGTCAGCGGTCAAATCAAGTCAAGTCATGGCGA
CGTGGCAAGTACACTCAACTCCATGGAATGACAAAAGACCGTCCATCTAT
CTGTAGACAAAAGACCGTCCACCTATCTGAAGCCCTGCCTGTAGCGTGCT
GCAGTATGCTGTTTCGGGTATGCTCCACGTTGCCTTACCTTACTTTACCT
ATATTTTACTAATAATAGCTTAATAGTACGGATCAATATTATATTGGTAG
TAACTTCACTGATGTTGTCTTCAAGTCTATATAGTCTATCTGGTTTAGTA
AATGCCTGGTAGGCGTTATCACGGAAGCCGCGTCGCGTCACGTCACGTCA
CGGCATGATGTTACTATTATATTAATACCTGGTATTACGCTTTATCATAC
GGCAACGTGTAAGTACGACAGACTAGTCTACTGGCTCATTTTTGCTTCCG
CCAGTTTTTCCAGAATCAGCTATTAATAGACTAGACTACAGTATCAATAC
TAATAGCTCTTAGCTAATACTGTAAATCCGTTTTCACTTCTTGAAGGGCA
GGGCAGTACTGCAGAAACATTTTACCATCAATTATTAATACTTTATTAGA
CTATTAATAATACTTGTGTCGTGTACCGTGTACCGTGTACCGTGTACCGT
ATTCACAACCGACAGGTACGGAAAGCGCCGGGGATGGATGAAGGACGTAT
CTGACTACCTGTCCATCGAGAAGCACGCGGCAGACGGTACGGCGTCGTTG
AACGGAGATTAACCCTTTTGGTACTATCGGTCTGACAACGGCTATTTTTT
TTCTTTTTGACAGTCCTGTGCTGGTCGAGCTTTTTTACATGGGCCAGCCA
CCATACATTCAGTCATCTTACCGTACACTGTTTACCTTACCCCAAGTAGT
ATACGCCTACTTCGTCTCTAACCGTGGGTGTTAAGAGGTTGTTAGTACCA
AACTAGTACGGCATTTTTCAGGAAAGTTATAGTAAAGTCAAGTGAAGAAC
AAAGTTGGTTTGGGGTTTACATTTTGTACCGTGCACAGGTTTGCGGGGTT
GATTCATGGTAAATCCTTTCTGAGCCGTATCTTGGGACTGCTTTTAGTTT
GGGGAGGTGCTGTACTCGGGCTCCTGACCTCGCTGCCCAAACAAGGCTGG
AAAATAAACAGGCGGTCGACCGCCTGTTAAGCCCGCTCAAGTACCAAAGG
GGTTAAACAATGAACAATAAACAACCGAGAGCAGAGATAGATGAAAGAGC
ATCTGTGTTGGACAGTACGGAAATAAGGCAGGGCTCAGTTGCCAGTTACC
ATTTACCAGTTACCACTGACCTTAACACACGAGCAACAGCGGGATGTACT
CTTTTACGTGATAAAAGGCCGTTTTATTATTAGATCAGTATTAGTATTAG
TATTACCATTAGTAGTCGTAGTTTGCACTCAGCACAGGCACTGATAAAAG
TACTGAAACTCGTGTTACAAACAAGACAAAAAGACGCCACCCGCTCCGAC
GTTCGGTTGACCCGACCCGACCCGACCTATTGTACGTGGTGACGTGCTCC
CTGTCGATGTCGAACTCAAGCAGGCAAGACATATTGGTTCTGTAGAATGG
ACCAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig8432:11996..17900-

>mRNA_A-nodosum_M_contig8432.5.1 ID=mRNA_A-nodosum_M_contig8432.5.1|Name=mRNA_A-nodosum_M_contig8432.5.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=816bp|location=Sequence derived from alignment at A-nodosum_M_contig8432:11996..17900- (Ascophyllum nodosum dioecious)
ATGATGAAAACGCCCATGATCCGGGGGGAGTTGCCTTTGGTCCCCACGGA
CTTGAGCACGAGCACGTTCATGCTGCCGGCGAAGGAGGACATTCGTCGGA
AAAACTACTTTGTACCGAAGATCGATAAGCTCCTTGCCGAGCAGCTGAAC
TGGACTCCACCGGGGTGGAAGTCCCCCAACACGATGCGACTGTGGCCTTT
AAAAAACGGCGGTAAAGGGCGGTGCATCTTCCACTCCGTGTCGGTAGCCC
TCTGGGGGTGCGACGACGACGGAGAAATGCTGGAGACGATGACGGAGACC
GTGCTGGAGCAAGACCGCGATCTCCTGTTTCCGATTTATAAGAAGCAATT
CCCCAAGCAGACAGAAGAGGAGGCACGGAAGTTCTGGGATGCGAAGATCG
TGAAGAGGACTGGGAAGGGTGGCCGCACTCAGTTCAACTACTTCATCCTG
GCTAATGTCTTAAGGAGGCCAATCATCACGGTCTCCGACAAATACCGCCG
AGATCGCGATCTTAGCCCCATTGGCACTGCCGGAATGGGTTCCAAGATCT
TCCTGCCGACATTGCTCGAGCCGGGGGACTGCTCCAAAACCCCGCTAGTG
CTTGGCGTGACGTGGACAAAACGAATTGCTCACTCGAGCGCCCTCGCGGG
GGTTTCTGGGCAGCTCACGCACGTCAAGCTTTGTGATAAGGAGGGAAAAC
GATTTCCTATTTGGTACGGAAAGCGCCGGGGATGGATGAAGGACGTATCT
GACTACCTGTCCATCGAGAAGCACGCGGCAGACGGCAAGACATATTGGTT
CTGTAGAATGGACCAG
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