mRNA_A-nodosum_M_contig842.20.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig842.20.1
Unique NamemRNA_A-nodosum_M_contig842.20.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig842.20.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig842contigA-nodosum_M_contig842:230068..233966 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size2174
Hectar predicted targeting categoryother localisation
Exons5
Cds size1989
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig842.20.1prot_A-nodosum_M_contig842.20.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig842 230068..233782 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870205.2959201-CDS-A-nodosum_M_contig842:230067..2311221680870205.2959201-CDS-A-nodosum_M_contig842:230067..231122Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig842 230068..231122 -
1680870205.306635-CDS-A-nodosum_M_contig842:231414..2315901680870205.306635-CDS-A-nodosum_M_contig842:231414..231590Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig842 231415..231590 -
1680870205.3170369-CDS-A-nodosum_M_contig842:231986..2320821680870205.3170369-CDS-A-nodosum_M_contig842:231986..232082Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig842 231987..232082 -
1680870205.3276527-CDS-A-nodosum_M_contig842:232515..2326411680870205.3276527-CDS-A-nodosum_M_contig842:232515..232641Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig842 232516..232641 -
1680870205.3398736-CDS-A-nodosum_M_contig842:233246..2337821680870205.3398736-CDS-A-nodosum_M_contig842:233246..233782Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig842 233247..233782 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870205.3512292-UTR-A-nodosum_M_contig842:233782..2339661680870205.3512292-UTR-A-nodosum_M_contig842:233782..233966Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig842 233783..233966 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig842.20.1

>prot_A-nodosum_M_contig842.20.1 ID=prot_A-nodosum_M_contig842.20.1|Name=mRNA_A-nodosum_M_contig842.20.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=663bp
MELVNADACSPPSRWTSSPEAWWIPADASNASHESAGSVEERQPEDMGFE
DNGLPYARSRRSTPGAKMEEGPSQPWTATTRDPRRLFGDLPNSSYHANSL
GGPDLRELQQRVITRTRSSFDAERQSSAKKEEQRIATTEFDTSNTYTKSG
FTGGDQPFWRGECYRLQNKLASLKAERQRWDHERILLLRENVDRSRDLAG
LQRAVESQSQLVMESLIAAQRSQPNAALSISLPTGRRIMSNQRNHHDERN
SKSRNGEWCRVAVSDSDGRRGGRDGEGGWEMWEWKGRTVVLQKSPRRRLV
NPERAVHKGVKAASDEKREDGRDQLGTAETLATATARTVGPIPVTSMETS
SFLNDINELKVAVQSLALTIGAIPRLQKRAAASSSPLEGTIDSSSPHHPY
DVYRPRLRPQSLPEASMSHGISSSSSLPVVINSTDLFDACDSPTPRDGGG
QPPGSSASTRRPVSSASTTENSEPAGSVRGGAPTKNEVVPDGDRGKEEGD
TAGADAAYDRTRDVTSTLKRRTSSRVRHSNDAKLSQKDDEDTMNEKEQQI
TAESTMSKKDRQQLGQSADATDQSHAPCKMVLEEPSRTINVTSAHHQAHP
TEKEVNGGRDPGRTLSRSPSVVDAGAISRGGENGVNNSGDQQPSSSNAGG
NNGPVAAGNTSAP
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mRNA from alignment at A-nodosum_M_contig842:230068..233966-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig842.20.1 ID=mRNA_A-nodosum_M_contig842.20.1|Name=mRNA_A-nodosum_M_contig842.20.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3899bp|location=Sequence derived from alignment at A-nodosum_M_contig842:230068..233966- (Ascophyllum nodosum dioecious)
CGCTAAAGGTGCCGTCGAGAAAGAGGGTGTAAGGCCGAGTGCGCCTCCTC
TCGCGACCCCAGTTTCTTCCCATCCGTGGATGTCCCATTTTGGTTCCGGT
TCACGGTGCGTCACCCAGCTACCCGAACCGGCATATGAAGCACCGCACAT
CTCCATTAGCACCTGGTCTGCATGACTTGGACACATGGAATTGGTAAACG
CTGACGCGTGCTCTCCACCTTCTCGTTGGACATCATCACCGGAAGCATGG
TGGATCCCTGCAGATGCCAGCAATGCCAGTCACGAGAGTGCTGGAAGTGT
AGAAGAGCGTCAGCCTGAAGACATGGGCTTCGAAGATAACGGGTTGCCTT
ATGCTCGGAGTCGTAGATCGACGCCCGGAGCCAAAATGGAGGAAGGTCCA
TCCCAGCCGTGGACTGCAACAACCCGAGATCCACGGCGTTTGTTCGGTGA
CCTTCCCAACTCCTCGTACCATGCTAATTCACTAGGAGGTCCCGATTTGC
GAGAACTACAACAGCGAGTGATAACGAGGACGAGGAGTAGCTTTGACGCT
GAACGACAGAGCTCTGCCAAGAAGGAGGAGCAGAGGATAGCAACGACGGA
ATTTGACACAAGCAATACTTATACAAAGAGTGGTTTCACTGGAGGAGACC
AGCCTTTTTGGAGGGGGGAGTGCTATCGCCTGCAAAATAAACTGGCTTCC
CTGAAGGCAGAAAGACAAAGGTATGTGATTCGACTGAAACTGGCTTCCCC
GGGAGGCAGAAATTAAAGAGGTGTGACTCGAGACTGGAACGCGGTGCTCA
TCTAGAGCTTATCGGGAGGTCACAGATTTGATGAGGTGACCCCCTAGAAA
AACACAACTTTTCTGAGACGGTTGGGTATTCGACCCCCTTTTGGAGGGCA
ACCTTGTATTCATTGGCGTCGGCGGCAGTAGAACTTGCGCCGTAGGTTCG
AATCAGTAGGCGCAAAAACGCAACTTGCTCATATAAATAGAGAGTTCGAT
ACCATATGATTTATATCATGCATTCGCATGAGCGACCAACTTAGCTCTAT
AAAGACGAGCATTTACTTTTTACGTCCTATCACAAAATCAACTACATTTA
GCACTTAGAATGCTCAATGATTTTCCTGCTCAAAATCTCGATACGTTAGT
CACCCCGCGTACTACGTAATCCTACGAAACCAGAGGGAAACTCGAATTGA
CCCCCCCGCCCACCCTTAAAAGTAATTATTAGGTACGCAGGCATCCCGCC
CCCCGCCCCAAGTGACTGCCCTTCACGCGTGCGTATATTCGGGAACAAAT
GATAATATGCTCTTTGAAACTGAAGGTGGGATCACGAGCGGATACTTCTG
CTAAGAGAGAACGTCGACCGCAGTCGCGATTTGGCCGGACTACAGCGGGC
GGTCGAGTCTCAGTCTCAGCTGGTGATGGAAAGTCTCATTGCGGCCCAGA
GGTTGTATGACTATCTTGCTTACATTTGTGCGATACTATCTCTTCGATTC
TAACGCCATTTAATCAACGTTTCTGCTGACAGGGCATCATCGAATGGGGT
CTCGTAAGTTCGGGCGTTCACATTGCGGGTTGTTCGTATTTCGGCGACAA
ATTTATTTGCGTTTATAAGGCACGGAGCAACGTGCGAGATTCCACGCCAC
GTCGGACGACCGTTTCCTCTCTACCATAATAGCGCTGGGCACTCCTGTTT
CTTCTCCCGGCGAGTGCGCTTCAGCCTTCATGGTTTGGGGTAATCCTATC
TCGCCTTTGTAAGCGTCGCCCTTGCAGACAAGCCGCGTGGGTAGGATAGC
ATAGATATACGAGAAATAGGTAATTCGTGTAGCTCAAAACGAGTCCATTC
CACAAATACATTTTGTGCATTCGGCGTCGAACAGGTCCCAGCCAAACGCC
GCGCTATCGATCAGTTTACCGACAGGACGACGGATCATGTCAAATCAGCG
AAATCATCACGACGAGCGGAACTCAAAAAGGTTCGACGAGATCTCGGACA
CCCTCCGTGCCCGGTTGGCGTGCCGTAACCTTGAAGAAGAGATCTCGCCG
CCCGGGGGCAATGTAGTCGACAGGAATCCGATGAGGTTTCAAGGATGTTG
GCCCTTAGACTCTACCGACTTCTTTCCCGCTTCTTCGGCGTTTCGCGAAG
AATTCGATATCAGGCGAGGGAATGGTGCAGGAGTTCATTGTTCCAATGAT
CAGCAACTAGGATCTGACTCTTCCGTCGTCGCGTGCAGTGAAATATGACA
ACCACGCGCCTCGACAGCGAAGAACGAACCACAACTCTCGAGTTTGGGCC
CGCAGAGGCAGCAGTTAGTGACCACCACCACTTTGTCCCCTGGCCTGACC
CTTCCCCTTCGGGCATCCGAACGCAGTCGGAACGGAGAATGGTGTCGTGT
TGCGGTGAGCGATAGTGACGGACGACGCGGCGGCCGCGACGGTGAAGGTG
GCTGGGAGATGTGGGAATGGAAAGGGCGGACGGTGGTCCTACAAAAGTCA
CCAAGGAGACGACTGGTGAACCCCGAGCGTGCAGTACATAAAGGAGTAAA
AGGTGCGATGGCTCTCCACAAACCGCTTTCGAGGACGCATGCAGGGTGAA
ATACTATCTTTAACGCGCCTGATTTTTTTCGCAGAACCCTTACCAGGCTG
CGTCGCGTAGTAAACGATCGTATAGTGGGTACACTCCCGCACGTCTTTGG
GGTGGTCAATGATTCCCCTAGCAGATAAAATGGTACATAGACCGTCATGA
AACGGGAGAAACGAGAAGCCATTATTATGCAAATAGTATACATTTTTCAA
CCCTCAACATTGATACCTTCTTCGTCGCCTTTGTGTTTTCCCAGCCGCGT
CAGACGAAAAAAGGGAGGATGGACGAGATCAGTTGGGTACGGCTGAGACA
CTTGCCACGGCAACCGCACGGACGGTGGGGCCAATACCAGTGACATCGAT
GGAAACCAGCTCCTTCTTGAACGATATCAATGAGCTTAAAGTGGCCGTCC
AGTCCCTTGCCCTAACTATCGGCGCTATACCCCGCCTCCAAAAACGTGCC
GCAGCTTCCTCCTCACCGCTCGAAGGAACGATTGACAGTTCTTCACCCCA
TCACCCCTATGATGTTTACCGTCCGAGGTTACGACCGCAGTCTCTGCCCG
AGGCTTCAATGTCACATGGGATATCGTCTTCCTCTTCCTTACCAGTCGTC
ATCAATTCTACGGATCTCTTTGATGCTTGTGATTCACCCACCCCGCGTGA
TGGGGGCGGTCAGCCACCCGGCTCATCTGCTTCAACGAGGCGCCCAGTTT
CCTCCGCGTCGACGACAGAAAACTCAGAACCGGCTGGAAGCGTCAGGGGT
GGTGCTCCAACTAAGAACGAGGTAGTTCCAGATGGCGATCGAGGGAAAGA
GGAAGGTGACACCGCCGGGGCTGACGCAGCGTACGATCGCACACGAGATG
TCACTTCCACGCTTAAGAGGCGGACTTCAAGCCGCGTCAGGCATAGCAAC
GACGCCAAACTCTCCCAAAAAGACGACGAGGACACGATGAACGAAAAAGA
ACAACAAATTACCGCCGAATCTACAATGTCGAAGAAAGATCGGCAGCAAT
TAGGCCAGAGTGCGGACGCTACCGATCAATCGCACGCCCCGTGCAAAATG
GTTCTGGAGGAACCATCACGCACGATTAACGTCACTTCCGCTCATCATCA
GGCTCATCCTACGGAAAAGGAAGTCAACGGCGGCCGAGATCCAGGGAGGA
CGCTAAGTAGGTCGCCGAGTGTTGTTGACGCCGGAGCTATCTCGCGTGGA
GGTGAAAACGGCGTTAACAACTCTGGCGATCAACAACCCAGTAGTAGCAA
TGCTGGGGGCAACAATGGACCGGTTGCCGCTGGAAATACTTCGGCTCCG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig842:230068..233966-

>mRNA_A-nodosum_M_contig842.20.1 ID=mRNA_A-nodosum_M_contig842.20.1|Name=mRNA_A-nodosum_M_contig842.20.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=1989bp|location=Sequence derived from alignment at A-nodosum_M_contig842:230068..233966- (Ascophyllum nodosum dioecious)
ATGGAATTGGTAAACGCTGACGCGTGCTCTCCACCTTCTCGTTGGACATC
ATCACCGGAAGCATGGTGGATCCCTGCAGATGCCAGCAATGCCAGTCACG
AGAGTGCTGGAAGTGTAGAAGAGCGTCAGCCTGAAGACATGGGCTTCGAA
GATAACGGGTTGCCTTATGCTCGGAGTCGTAGATCGACGCCCGGAGCCAA
AATGGAGGAAGGTCCATCCCAGCCGTGGACTGCAACAACCCGAGATCCAC
GGCGTTTGTTCGGTGACCTTCCCAACTCCTCGTACCATGCTAATTCACTA
GGAGGTCCCGATTTGCGAGAACTACAACAGCGAGTGATAACGAGGACGAG
GAGTAGCTTTGACGCTGAACGACAGAGCTCTGCCAAGAAGGAGGAGCAGA
GGATAGCAACGACGGAATTTGACACAAGCAATACTTATACAAAGAGTGGT
TTCACTGGAGGAGACCAGCCTTTTTGGAGGGGGGAGTGCTATCGCCTGCA
AAATAAACTGGCTTCCCTGAAGGCAGAAAGACAAAGGTGGGATCACGAGC
GGATACTTCTGCTAAGAGAGAACGTCGACCGCAGTCGCGATTTGGCCGGA
CTACAGCGGGCGGTCGAGTCTCAGTCTCAGCTGGTGATGGAAAGTCTCAT
TGCGGCCCAGAGGTCCCAGCCAAACGCCGCGCTATCGATCAGTTTACCGA
CAGGACGACGGATCATGTCAAATCAGCGAAATCATCACGACGAGCGGAAC
TCAAAAAGTCGGAACGGAGAATGGTGTCGTGTTGCGGTGAGCGATAGTGA
CGGACGACGCGGCGGCCGCGACGGTGAAGGTGGCTGGGAGATGTGGGAAT
GGAAAGGGCGGACGGTGGTCCTACAAAAGTCACCAAGGAGACGACTGGTG
AACCCCGAGCGTGCAGTACATAAAGGAGTAAAAGCCGCGTCAGACGAAAA
AAGGGAGGATGGACGAGATCAGTTGGGTACGGCTGAGACACTTGCCACGG
CAACCGCACGGACGGTGGGGCCAATACCAGTGACATCGATGGAAACCAGC
TCCTTCTTGAACGATATCAATGAGCTTAAAGTGGCCGTCCAGTCCCTTGC
CCTAACTATCGGCGCTATACCCCGCCTCCAAAAACGTGCCGCAGCTTCCT
CCTCACCGCTCGAAGGAACGATTGACAGTTCTTCACCCCATCACCCCTAT
GATGTTTACCGTCCGAGGTTACGACCGCAGTCTCTGCCCGAGGCTTCAAT
GTCACATGGGATATCGTCTTCCTCTTCCTTACCAGTCGTCATCAATTCTA
CGGATCTCTTTGATGCTTGTGATTCACCCACCCCGCGTGATGGGGGCGGT
CAGCCACCCGGCTCATCTGCTTCAACGAGGCGCCCAGTTTCCTCCGCGTC
GACGACAGAAAACTCAGAACCGGCTGGAAGCGTCAGGGGTGGTGCTCCAA
CTAAGAACGAGGTAGTTCCAGATGGCGATCGAGGGAAAGAGGAAGGTGAC
ACCGCCGGGGCTGACGCAGCGTACGATCGCACACGAGATGTCACTTCCAC
GCTTAAGAGGCGGACTTCAAGCCGCGTCAGGCATAGCAACGACGCCAAAC
TCTCCCAAAAAGACGACGAGGACACGATGAACGAAAAAGAACAACAAATT
ACCGCCGAATCTACAATGTCGAAGAAAGATCGGCAGCAATTAGGCCAGAG
TGCGGACGCTACCGATCAATCGCACGCCCCGTGCAAAATGGTTCTGGAGG
AACCATCACGCACGATTAACGTCACTTCCGCTCATCATCAGGCTCATCCT
ACGGAAAAGGAAGTCAACGGCGGCCGAGATCCAGGGAGGACGCTAAGTAG
GTCGCCGAGTGTTGTTGACGCCGGAGCTATCTCGCGTGGAGGTGAAAACG
GCGTTAACAACTCTGGCGATCAACAACCCAGTAGTAGCAATGCTGGGGGC
AACAATGGACCGGTTGCCGCTGGAAATACTTCGGCTCCG
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