mRNA_A-nodosum_M_contig841.37.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig841.37.1
Unique NamemRNA_A-nodosum_M_contig841.37.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig841.37.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig841contigA-nodosum_M_contig841:220507..221257 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size304
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size153
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870202.0362191-UTR-A-nodosum_M_contig841:220506..2206181680870202.0362191-UTR-A-nodosum_M_contig841:220506..220618Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig841 220507..220618 +
1680870202.0713382-UTR-A-nodosum_M_contig841:221218..2212571680870202.0713382-UTR-A-nodosum_M_contig841:221218..221257Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig841 221219..221257 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870202.0470479-CDS-A-nodosum_M_contig841:220618..2207351680870202.0470479-CDS-A-nodosum_M_contig841:220618..220735Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig841 220619..220735 +
1680870202.0574248-CDS-A-nodosum_M_contig841:221182..2212181680870202.0574248-CDS-A-nodosum_M_contig841:221182..221218Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig841 221183..221218 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig841.37.1prot_A-nodosum_M_contig841.37.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig841 220619..221218 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig841.37.1

>prot_A-nodosum_M_contig841.37.1 ID=prot_A-nodosum_M_contig841.37.1|Name=mRNA_A-nodosum_M_contig841.37.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=51bp
MEYGMCPPGTGDPVSLGSSFSSLVGVVTPTPLGRMSRKGERRVRISGPLF
*
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mRNA from alignment at A-nodosum_M_contig841:220507..221257+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig841.37.1 ID=mRNA_A-nodosum_M_contig841.37.1|Name=mRNA_A-nodosum_M_contig841.37.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=751bp|location=Sequence derived from alignment at A-nodosum_M_contig841:220507..221257+ (Ascophyllum nodosum dioecious)
GTGTCTTTGTTATGGGTAACTCACAACCCGCATTTTTAATGCGGGGGGTG
ACGACGTAATGCAACGCGATCTGTCGAAAGTTTGTTTGTTCTTGTTCTCT
TCGTCGAAATGAATGGAATATGGAATGTGCCCACCGGGGACAGGGGACCC
GGTCTCCTTGGGTTCCTCCTTCTCGTCTCTCGTTGGTGTTGTAACACCTA
CACCCCTCGGAAGGATGTCTCGGAAGGGTGTGTGGACCGGCAGGGGAACG
GGGTACGCAGTGTAATGAGTAAAGCGGGAATAAAACCGGCGGGTGAGGGA
GGGGGGGGGAGGAGGGGGAGGGAAGCATGTTGTATCTGGCGGGTCTGTAC
AAAGAGGGAGCCATGCAGGGAGTTGTTGTACCCCAAGACGACGTCTGTAC
ATGTTCGTTAACCGCTGTTGGTCTCTCGTGATTTCGCGACAGATAAAGAG
CGAAATGATATGGCTTTTATTGTGAAGGGTCGTGGGGGGTGCGGCGCTTG
ACCTACTCTTTTTGTGGGTGCGCTAGATTGTCCTCTGTTCTTATCTGCTT
GTCGGGAGTTTTGCGCCGTATGGGATAATCCGAGACGTCAGTTTTGTTCC
TGCGGTGTCTGCATTGTTGAGGCATTTATGTGGCTCCTCGAGGGTCAGTG
AGAACTTGGGGAAACTCGGCCGGAAGGAGAGGCGTGTCAGAATTTCAGGG
CCGTTATTTTAGGCGTTGTGCGCACGTTTGGTGACCGCCCGGACATGTAA
G
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Coding sequence (CDS) from alignment at A-nodosum_M_contig841:220507..221257+

>mRNA_A-nodosum_M_contig841.37.1 ID=mRNA_A-nodosum_M_contig841.37.1|Name=mRNA_A-nodosum_M_contig841.37.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=153bp|location=Sequence derived from alignment at A-nodosum_M_contig841:220507..221257+ (Ascophyllum nodosum dioecious)
ATGGAATATGGAATGTGCCCACCGGGGACAGGGGACCCGGTCTCCTTGGG
TTCCTCCTTCTCGTCTCTCGTTGGTGTTGTAACACCTACACCCCTCGGAA
GGATGTCTCGGAAGGGTGAGAGGCGTGTCAGAATTTCAGGGCCGTTATTT
TAG
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