mRNA_A-nodosum_M_contig841.36.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig841.36.1 vs. uniprot
Match: A0A6H5L4J5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4J5_9PHAE) HSP 1 Score: 173 bits (438), Expect = 8.720e-52 Identity = 81/106 (76.42%), Postives = 96/106 (90.57%), Query Frame = 2
Query: 155 MISKVLKAAFPHVASQIPIRGDDFSWDYEGRGATEGKQSHMASAVEELTQTHAASITRASTLLIDDDVNNVQIALSQGVKSIWCDPRNPNSMISDLINLSNSRDSS 472
MIS VLK AFPHVASQIPIRGDDFSW+YEGRGAT+GKQSHMASA EELTQTHAASITRASTLL+DDDVNNV IALS+GV S+WC+P++P SMI++L++L+ + +
Sbjct: 1 MISSVLKVAFPHVASQIPIRGDDFSWEYEGRGATDGKQSHMASAAEELTQTHAASITRASTLLVDDDVNNVNIALSEGVNSVWCNPKDPTSMITELLSLAKPHEKA 106
BLAST of mRNA_A-nodosum_M_contig841.36.1 vs. uniprot
Match: A0A6S9F1B3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9F1B3_HETAK) HSP 1 Score: 171 bits (433), Expect = 2.690e-50 Identity = 86/151 (56.95%), Postives = 109/151 (72.19%), Query Frame = 2
Query: 2 LTIVDIHTSGRWPGTPEQLAQRIRPFFQALIPAALAHGLYLGVVTFSPQVSMISKVLKAAFPHVASQIPIRGDDFSWDYEGRGATEGKQSHMASAVEELTQT---HAASITRASTLLIDDDVNNVQIALSQGVKSIWCDPRNPNSMISDLI 445
LT++D+HT GRW G L IRP F+ LIPAAL GL +VTFSPQV MIS VL+ AFP QI IRG+D SW+YEG G+T GKQ+HMASAVEEL A +ITRA+T+L+DDD+NNV IAL +GVK+ WC+P +P+S+ ++
Sbjct: 51 LTVLDVHTGGRWLGRAADLTPHIRPLFRHLIPAALDAGLKTAIVTFSPQVHMISAVLEEAFPGKGGQITIRGEDGSWEYEGAGSTAGKQAHMASAVEELVARAGPDAPTITRATTVLVDDDLNNVSIALQEGVKAYWCNPDDPDSLTQAML 201
BLAST of mRNA_A-nodosum_M_contig841.36.1 vs. uniprot
Match: A0A835YYJ4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYJ4_9STRA) HSP 1 Score: 157 bits (397), Expect = 2.450e-45 Identity = 82/151 (54.30%), Postives = 107/151 (70.86%), Query Frame = 2
Query: 5 TIVDIHTSGRWPGTPEQLAQRIRPFFQALIPAALAHGLYLGVVTFSPQVSMISKVLKAAF-PHVASQIPIRGDDFSWDYEGRGATEGKQSHMASAVEELTQTHAASITRASTLLIDDDVNNVQIALSQGVKSIWCDPRNPNSMISDLINLS 454
T+VD+HT GRW + +LA+ +RPFF+ L+ A HG+++ VVTFS QVS+I VL AF +AS+I IRG D SW Y GRGA EGKQ+H+ASA EELTQ TR STLL DDD +NV+ AL GV+++ CD +P++M+ DLI LS
Sbjct: 22 TLVDVHTFGRWQDSEAELAKHVRPFFRELVLAGAEHGMHMAVVTFSAQVSIIRGVLHEAFGEEIASRIVIRGADGSWTYTGRGACEGKQAHIASAAEELTQ-----FTRCSTLLFDDDEHNVRAALDAGVRAVLCDTHDPHAMVRDLIALS 167
BLAST of mRNA_A-nodosum_M_contig841.36.1 vs. uniprot
Match: A0A7S1G1M2_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1G1M2_9STRA) HSP 1 Score: 157 bits (398), Expect = 4.850e-45 Identity = 79/152 (51.97%), Postives = 102/152 (67.11%), Query Frame = 2
Query: 2 LTIVDIHTSGRWPGTPEQLAQRIRPFFQALIPAALAHGLYLGVVTFSPQVSMISKVLKAAFPHVASQIPIRGDDFSWDYEGRGATEGKQSHMASAVEELTQTHAA-SITRASTLLIDDDVNNVQIALSQGVKSIWCDPRNPNSMISDLINLS 454
LT +D+HT G+W GTP++LA IRP F+ LI A A + + +VTFSPQV I VL FP S+IPIRG D SW YEG G +GKQSHMASA EEL T+A I++ STLLIDDD NN++ A V++IW +P P+ ++ D+ LS
Sbjct: 50 LTTIDVHTGGKWEGTPDELASHIRPIFKHLIARAHAANIAIAIVTFSPQVRHIGSVLDKTFPEFGSRIPIRGRDRSWTYEGVGCKDGKQSHMASAAEELMTTNAGLQISKDSTLLIDDDANNIRTAFRDHVRAIWLNPDKPHRVLDDIDRLS 201
BLAST of mRNA_A-nodosum_M_contig841.36.1 vs. uniprot
Match: I2CS33_NANGC (Uncharacterized protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CS33_NANGC) HSP 1 Score: 149 bits (375), Expect = 4.040e-42 Identity = 76/150 (50.67%), Postives = 101/150 (67.33%), Query Frame = 2
Query: 2 LTIVDIHTSGRWPGTPEQLAQRIRPFFQALIPAALAHGLYLGVVTFSPQVSMISKVLKAAFPH-VASQIPIRGDDFSWDYEGRGATEGKQSHMASAVEEL-TQTHAASITRASTLLIDDDVNNVQIALSQGVKSIWCDPRNPNSMISDLI 445
+T++DIHT GRW G +L IRPFF +LI A G+++ VVTFSPQ MI +VL F ++S IPIRG+D SW Y GRG GKQ HMASAVEEL + + +ITR ST+LIDDD N+++AL+ GV++ W D R P ++ L+
Sbjct: 1 MTVLDIHTGGRWTGHASELCAHIRPFFSSLIVEAGRAGIHMAVVTFSPQTDMIRQVLTEKFGESLSSLIPIRGEDGSWSYRGRGCQRGKQGHMASAVEELCARRPSLAITRNSTVLIDDDRGNIEVALAAGVRAFWLDTRRPEQVVDALL 150
BLAST of mRNA_A-nodosum_M_contig841.36.1 vs. uniprot
Match: A0A7S4QG65_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QG65_9STRA) HSP 1 Score: 148 bits (374), Expect = 1.330e-41 Identity = 73/150 (48.67%), Postives = 102/150 (68.00%), Query Frame = 2
Query: 5 TIVDIHTSGRWPGTPEQLAQRIRPFFQALIPAALAHGLYLGVVTFSPQVSMISKVLKAAFPHVASQIPIRGDDFSWDYEGRGATEGKQSHMASAVEELTQTHAA-SITRASTLLIDDDVNNVQIALSQGVKSIWCDPRNPNSMISDLINL 451
TIVD+HT G+W G+ +L+ +RP FQ LIPAA+ + + VVTFSPQ I VL+ FP ++ I +RG D +W Y G G+ EGKQSHMASAVEE+ H I+R +TLLIDDDV+N+++AL GV++IW +P + ++ D+ L
Sbjct: 37 TIVDVHTHGQWKGSAHELSTHVRPLFQHLIPAAITADIKVAVVTFSPQCGQIKDVLEIIFPEFSNGIVVRGRDRTWSYLGAGSKEGKQSHMASAVEEIEAMHTKLDISRNTTLLIDDDVSNIKVALLDGVRAIWLNPSKSHLLLKDIQML 186
BLAST of mRNA_A-nodosum_M_contig841.36.1 vs. uniprot
Match: A0A7S2I2G2_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2I2G2_9STRA) HSP 1 Score: 146 bits (369), Expect = 7.510e-41 Identity = 70/150 (46.67%), Postives = 102/150 (68.00%), Query Frame = 2
Query: 5 TIVDIHTSGRWPGTPEQLAQRIRPFFQALIPAALAHGLYLGVVTFSPQVSMISKVLKAAFPHVASQIPIRGDDFSWDYEGRGATEGKQSHMASAVEELTQTHAA-SITRASTLLIDDDVNNVQIALSQGVKSIWCDPRNPNSMISDLINL 451
TIVD+HT G+W G+ +L+ +RP FQ LI AA+ + + VVTFSPQ I VL+ A P ++ I +RG D +W Y G G+ +GKQSHMASAVEE+ H I++ +TLLIDDDVNN+++AL GV+++W +P ++++ D+ L
Sbjct: 37 TIVDVHTHGQWKGSAHELSTHVRPLFQHLISAAIGADIKVAVVTFSPQCGQIKDVLEIALPESSNSIVVRGRDRTWSYVGAGSKDGKQSHMASAVEEIESMHEKLDISKNTTLLIDDDVNNIKVALLDGVRAVWLNPNKSHNLLKDIQAL 186
BLAST of mRNA_A-nodosum_M_contig841.36.1 vs. uniprot
Match: A0A7S1U168_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U168_9STRA) HSP 1 Score: 145 bits (365), Expect = 1.180e-39 Identity = 72/147 (48.98%), Postives = 101/147 (68.71%), Query Frame = 2
Query: 5 TIVDIHTSGRWPGTPEQLAQRIRPFFQALIPAALAHGLYLGVVTFSPQVSMISKVLKAAF-PHVASQIPIRGDDFSWDYEGRGATEGKQSHMASAVEELTQTHAASITRASTLLIDDDVNNVQIALSQGVKSIWCDPRNPNSMISDL 442
T++ HT G+W + E+LA +R FF+ +IPAA+ GL++ VVTF+PQ ++ VLKAAF VA++IP+RGDD SW+Y G G GKQ HMASA EEL H I R +TLL+DDD++NV++AL GV++I P +P + D+
Sbjct: 76 TLISTHTGGQWSYSCEELAAYVRDFFKLMIPAAIETGLHVAVVTFTPQTHLVHGVLKAAFGADVAAKIPVRGDDKSWEYRGDGVCCGKQGHMASAAEELMVMHDIHIERGTTLLVDDDISNVRLALEHGVRAILFKPDSPEDIARDI 222
BLAST of mRNA_A-nodosum_M_contig841.36.1 vs. uniprot
Match: A0A7S0CHW4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CHW4_9STRA) HSP 1 Score: 140 bits (353), Expect = 6.820e-39 Identity = 73/135 (54.07%), Postives = 92/135 (68.15%), Query Frame = 2
Query: 2 LTIVDIHTSGRWPGTPEQLAQRIRPFFQALIP-AALAHGLYLGVVTFSPQVSMISKVLKAAFPHVASQIPIRGDDFSWDYEGRGATEGKQSHMASAVEELTQTHAAS-ITRASTLLIDDDVNNVQIALSQGVKSI 400
LT++D+HT G W GTP +LA +RP F+ L+ AA+ G+ + +VTFSPQV I VLK FP IPIRG D SW YEG G+ EGKQ++MASA EEL T+ STLLIDDDVNN++IAL GV++I
Sbjct: 18 LTMIDVHTGGTWKGTPMELASHVRPLFKQLVTEAAVNGGIKIAIVTFSPQVRNIGDVLKVTFPDFHDSIPIRGRDKSWTYEGGGSREGKQAYMASAAEELGSIFPGEDFTKNSTLLIDDDVNNIKIALKDGVRAI 152
BLAST of mRNA_A-nodosum_M_contig841.36.1 vs. uniprot
Match: A0A7S2RHL8_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RHL8_9STRA) HSP 1 Score: 138 bits (348), Expect = 1.180e-37 Identity = 71/150 (47.33%), Postives = 96/150 (64.00%), Query Frame = 2
Query: 5 TIVDIHTSGRWPGTPEQLAQRIRPFFQALIPAALAHGLYLGVVTFSPQVSMISKVLKAAFPHVASQIPIRGDDFSWDYEGRGATEGKQSHMASAVEELTQTHAA-SITRASTLLIDDDVNNVQIALSQGVKSIWCDPRNPNSMISDLINL 451
TI+DIHT G W G ++L +RP F+ LI +A + + +VTFSPQV I +VL+ FP A I IRG D SW YEG G EGKQS MASA EE + ITR +TLL+DDD NN+++AL GV+ IW DP + + ++ +++ L
Sbjct: 40 TILDIHTGGVWKGAIDELCSHVRPLFRQLIVSAHTASIKIAIVTFSPQVEHIVEVLETHFPSFAHDILIRGRDQSWAYEGNGMKEGKQSFMASAAEEFEAKYPKIEITRNTTLLVDDDSNNIRLALKNGVRGIWFDPHDSDLLLKNMVVL 189 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig841.36.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig841.36.1 >prot_A-nodosum_M_contig841.36.1 ID=prot_A-nodosum_M_contig841.36.1|Name=mRNA_A-nodosum_M_contig841.36.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=116bp MISKVLKAAFPHVASQIPIRGDDFSWDYEGRGATEGKQSHMASAVEELTQback to top mRNA from alignment at A-nodosum_M_contig841:211018..220254+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig841.36.1 ID=mRNA_A-nodosum_M_contig841.36.1|Name=mRNA_A-nodosum_M_contig841.36.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=9237bp|location=Sequence derived from alignment at A-nodosum_M_contig841:211018..220254+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig841:211018..220254+ >mRNA_A-nodosum_M_contig841.36.1 ID=mRNA_A-nodosum_M_contig841.36.1|Name=mRNA_A-nodosum_M_contig841.36.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=348bp|location=Sequence derived from alignment at A-nodosum_M_contig841:211018..220254+ (Ascophyllum nodosum dioecious)back to top |