mRNA_A-nodosum_M_contig840.24.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig840.24.1 vs. uniprot
Match: B3VMZ8_FUCSE (Heat shock protein 20 n=2 Tax=Fucus serratus TaxID=87148 RepID=B3VMZ8_FUCSE) HSP 1 Score: 231 bits (590), Expect = 2.970e-71 Identity = 118/134 (88.06%), Postives = 123/134 (91.79%), Query Frame = 1
Query: 1 PSMGGEGCLGMNLDFHETNTGYELSADLPGMNKEDIKVDIDSESGVLTVTGERKQEREEKSEGGNERRKYHFVERSFGKTTRSIRLPDTADTSKASAAYANGVLKLNFPKREPLSARRLQIPIGDGEGAAPIGN 402
PSMG EG LGMNLDFHETN GYELSADLPGM KEDIKVDIDSESGVLTVTGERKQEREEKSEG NE+RKYHF+ERS+GKTTRS+RLPDTA TSKASA Y NGVLK+NFPKREP SARRLQIPIGDGEGAAP N
Sbjct: 54 PSMGVEGGLGMNLDFHETNKGYELSADLPGMKKEDIKVDIDSESGVLTVTGERKQEREEKSEGDNEQRKYHFLERSYGKTTRSVRLPDTAATSKASAEYVNGVLKINFPKREPPSARRLQIPIGDGEGAAPSEN 187
BLAST of mRNA_A-nodosum_M_contig840.24.1 vs. uniprot
Match: D7FUU6_ECTSI (Small heat shock protein heat shock protein 20 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUU6_ECTSI) HSP 1 Score: 153 bits (387), Expect = 8.520e-41 Identity = 76/127 (59.84%), Postives = 99/127 (77.95%), Query Frame = 1
Query: 4 SMGGEGC--LGMNLDFHETNTGYELSADLPGMNKEDIKVDIDSESGVLTVTGERKQEREEKSEGGNERRKYHFVERSFGKTTRSIRLPDTADTSKASAAYANGVLKLNFPKREPLSARRLQIPIGDG 378
S+ G+G LGM+LDFHET G+EL ADLPGM KED+ +D+D ESGVLTV+GERK E+EEK +G + RKYHFVERS+GKT+RS+RLP+ ADT+ A+A +GVL + FPK+E + R +IP+G G
Sbjct: 54 SLFGDGSRSLGMSLDFHETKDGFELIADLPGMKKEDVSIDVDQESGVLTVSGERKSEKEEKGDGKDGDRKYHFVERSYGKTSRSVRLPEAADTATANADLTDGVLTITFPKKEAPVSSRFRIPLGGG 180
BLAST of mRNA_A-nodosum_M_contig840.24.1 vs. uniprot
Match: A0A6H5KKF0_9PHAE (HSP20 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKF0_9PHAE) HSP 1 Score: 145 bits (367), Expect = 2.970e-38 Identity = 70/120 (58.33%), Postives = 93/120 (77.50%), Query Frame = 1
Query: 13 GEGCLGMNLDFHETNTGYELSADLPGMNKEDIKVDIDSESGVLTVTGERKQEREEKSEGGNERRKYHFVERSFGKTTRSIRLPDTADTSKASAAYANGVLKLNFPKREPLSARRLQIPIG 372
G L MNLDFHET G+EL ADLPGM +ED+ +D+D ESGVLTV+GERK +REEK + + RKYHFVERS+GKT+RS+RLP+ A+T+ A+A +GVL + FPK+E ++ R +IP+G
Sbjct: 29 GSRSLDMNLDFHETKDGFELIADLPGMKQEDVSIDVDQESGVLTVSGERKSKREEKRDDKDGDRKYHFVERSYGKTSRSVRLPEAANTANANADLTDGVLTITFPKKEAPASSRFRIPLG 148
BLAST of mRNA_A-nodosum_M_contig840.24.1 vs. uniprot
Match: A0A6H5JFM4_9PHAE (HSP20 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFM4_9PHAE) HSP 1 Score: 147 bits (371), Expect = 4.120e-38 Identity = 71/120 (59.17%), Postives = 93/120 (77.50%), Query Frame = 1
Query: 13 GEGCLGMNLDFHETNTGYELSADLPGMNKEDIKVDIDSESGVLTVTGERKQEREEKSEGGNERRKYHFVERSFGKTTRSIRLPDTADTSKASAAYANGVLKLNFPKREPLSARRLQIPIG 372
G L MNLDFHET G+EL ADLPGM +ED+ +D+D ESGVLTV+GERK EREEK + + RKYHFVERS+GKT+RS+RLP+ A+T+ A+A +GVL + FPK+E ++ R +IP+G
Sbjct: 84 GSRSLDMNLDFHETKDGFELIADLPGMKQEDVSIDVDQESGVLTVSGERKSEREEKRDDKDGDRKYHFVERSYGKTSRSVRLPEAANTANANADLTDGVLTITFPKKEAPASSRFRIPLG 203
BLAST of mRNA_A-nodosum_M_contig840.24.1 vs. uniprot
Match: A0A7C4SPX8_9PROT (Hsp20/alpha crystallin family protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A7C4SPX8_9PROT) HSP 1 Score: 101 bits (251), Expect = 6.080e-22 Identity = 51/112 (45.54%), Postives = 75/112 (66.96%), Query Frame = 1
Query: 34 NLDFHETNTGYELSADLPGMNKEDIKVDIDSESGVLTVTGERKQEREEKSEGGNERRKYHFVERSFGKTTRSIRLPDTADTSKASAAYANGVLKLNFPKREPLSARRLQIPI 369
N+D HE G +SADLPGM ++D++V+ID+ VLT++GERK +RE+K + YH +ER +GK +RS LP+T DT K A NGVL+++ PKRE R+++I +
Sbjct: 43 NVDIHEDKDGINISADLPGMTQKDVQVNIDN--NVLTLSGERKLDREDKKDN------YHRIERFYGKFSRSFSLPNTVDTEKVEAHMENGVLRIHLPKREEAKPRQIEIKV 146
BLAST of mRNA_A-nodosum_M_contig840.24.1 vs. uniprot
Match: A0A3C1Z549_9BACT (Heat-shock protein Hsp20 n=2 Tax=Nitrospira TaxID=1234 RepID=A0A3C1Z549_9BACT) HSP 1 Score: 99.4 bits (246), Expect = 3.420e-21 Identity = 50/111 (45.05%), Postives = 72/111 (64.86%), Query Frame = 1
Query: 37 LDFHETNTGYELSADLPGMNKEDIKVDIDSESGVLTVTGERKQEREEKSEGGNERRKYHFVERSFGKTTRSIRLPDTADTSKASAAYANGVLKLNFPKREPLSARRLQIPI 369
+D ET Y + A+LP + +ED+KV + E GVLT+ GERKQE+EEK +KYH VERS+G+ R+ LPDT D SK A YA+G+L L+ PK E +++++ +
Sbjct: 48 VDISETEAEYAIKAELPEVKREDVKVTV--EDGVLTIQGERKQEKEEKG------KKYHRVERSYGRFVRTFTLPDTVDESKVKAEYADGILHLHLPKSEKAKPKQIEVKV 150
BLAST of mRNA_A-nodosum_M_contig840.24.1 vs. uniprot
Match: D8PFX6_9BACT (Heat shock protein, Hsp20 family n=5 Tax=Nitrospira TaxID=1234 RepID=D8PFX6_9BACT) HSP 1 Score: 95.9 bits (237), Expect = 6.210e-20 Identity = 49/111 (44.14%), Postives = 71/111 (63.96%), Query Frame = 1
Query: 37 LDFHETNTGYELSADLPGMNKEDIKVDIDSESGVLTVTGERKQEREEKSEGGNERRKYHFVERSFGKTTRSIRLPDTADTSKASAAYANGVLKLNFPKREPLSARRLQIPI 369
+D ET + Y + A+LP + KED+KV + E VLT+ GERKQE+E+K +KYH +ERS+G+ RS LPD+ D SK A YA+G+L L+ PK E +++ + I
Sbjct: 48 VDISETESEYAIKAELPEVKKEDVKVTV--EDAVLTIQGERKQEKEDKG------KKYHRIERSYGRFVRSFTLPDSVDESKVRAEYADGILHLHLPKSEKAKPKQIDVKI 150
BLAST of mRNA_A-nodosum_M_contig840.24.1 vs. uniprot
Match: A0A7Y8HTY7_9BACT (Hsp20/alpha crystallin family protein n=1 Tax=Nitrospirae bacterium TaxID=2026887 RepID=A0A7Y8HTY7_9BACT) HSP 1 Score: 95.1 bits (235), Expect = 1.120e-19 Identity = 47/113 (41.59%), Postives = 70/113 (61.95%), Query Frame = 1
Query: 34 NLDFHETNTGYELSADLPGMNKEDIKVDIDSESGVLTVTGERKQEREEKSEGGNERRKYHFVERSFGKTTRSIRLPDTADTSKASAAYANGVLKLNFPKREPLSARRLQIPIG 372
++D ET+ Y + A++P + KED+KV + E GVLT+ GERKQE+EEK ++YH VERS+G+ RS LPD D K A + +G+L L PK E + +++ +G
Sbjct: 45 SVDVSETDGAYHIKAEIPDVKKEDVKVTL--EDGVLTIQGERKQEKEEKG------KRYHRVERSYGRFVRSFTLPDVVDEGKVKAEFKDGILNLELPKSEKAKPKAIEVKVG 149
BLAST of mRNA_A-nodosum_M_contig840.24.1 vs. uniprot
Match: UPI0009C3D03C (Hsp20/alpha crystallin family protein n=1 Tax=Alcanivorax xenomutans TaxID=1094342 RepID=UPI0009C3D03C) HSP 1 Score: 94.4 bits (233), Expect = 1.630e-19 Identity = 54/122 (44.26%), Postives = 79/122 (64.75%), Query Frame = 1
Query: 4 SMGGEGCLGMNLDFHETNTGYELSADLPGMNKEDIKVDIDSESGVLTVTGERKQEREEKSEGGNERRKYHFVERSFGKTTRSIRLPDTADTSKASAAYANGVLKLNFPKREPLSARRLQIPI 369
SM EG + M +D ET+ Y +SA+LPG+ KEDIKV +D+ GVLT+ GER ++ EEK+E KY+ ERSFG+ +RS LP++ + +A Y G++++ PK E SA R ++PI
Sbjct: 26 SMDNEGWMPM-VDVRETDAAYVVSAELPGIAKEDIKVVVDN--GVLTLQGERHRDEEEKNE------KYYRRERSFGRFSRSFSLPESVAADEITAKYREGIMEIRLPKTERQSAHRTEVPI 138
BLAST of mRNA_A-nodosum_M_contig840.24.1 vs. uniprot
Match: A0A7V6BE62_9BACT (Hsp20/alpha crystallin family protein n=1 Tax=Verrucomicrobia subdivision 3 bacterium TaxID=2052186 RepID=A0A7V6BE62_9BACT) HSP 1 Score: 94.7 bits (234), Expect = 1.630e-19 Identity = 51/111 (45.95%), Postives = 71/111 (63.96%), Query Frame = 1
Query: 37 LDFHETNTGYELSADLPGMNKEDIKVDIDSESGVLTVTGERKQEREEKSEGGNERRKYHFVERSFGKTTRSIRLPDTADTSKASAAYANGVLKLNFPKREPLSARRLQIPI 369
+D ETN Y + A+LP + KED+KV + E+GVLTV+GERK E+EEK KYH VERS+G RS LPD AD +K SA + +G+LK++ K E R +++ +
Sbjct: 48 VDISETNNEYLIKAELPEVKKEDVKVSV--ENGVLTVSGERKFEKEEKGV------KYHRVERSYGSFVRSFSLPDDADENKVSAEFKDGILKIHIQKNEKARPRAIEVKV 150 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig840.24.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig840.24.1 >prot_A-nodosum_M_contig840.24.1 ID=prot_A-nodosum_M_contig840.24.1|Name=mRNA_A-nodosum_M_contig840.24.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=133bp MGGEGCLGMNLDFHETNTGYELSADLPGMNKEDIKVDIDSESGVLTVTGEback to top mRNA from alignment at A-nodosum_M_contig840:315226..316822- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig840.24.1 ID=mRNA_A-nodosum_M_contig840.24.1|Name=mRNA_A-nodosum_M_contig840.24.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1597bp|location=Sequence derived from alignment at A-nodosum_M_contig840:315226..316822- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig840:315226..316822- >mRNA_A-nodosum_M_contig840.24.1 ID=mRNA_A-nodosum_M_contig840.24.1|Name=mRNA_A-nodosum_M_contig840.24.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=399bp|location=Sequence derived from alignment at A-nodosum_M_contig840:315226..316822- (Ascophyllum nodosum dioecious)back to top |