mRNA_A-nodosum_M_contig840.24.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig840.24.1
Unique NamemRNA_A-nodosum_M_contig840.24.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig840.24.1 vs. uniprot
Match: B3VMZ8_FUCSE (Heat shock protein 20 n=2 Tax=Fucus serratus TaxID=87148 RepID=B3VMZ8_FUCSE)

HSP 1 Score: 231 bits (590), Expect = 2.970e-71
Identity = 118/134 (88.06%), Postives = 123/134 (91.79%), Query Frame = 1
Query:    1 PSMGGEGCLGMNLDFHETNTGYELSADLPGMNKEDIKVDIDSESGVLTVTGERKQEREEKSEGGNERRKYHFVERSFGKTTRSIRLPDTADTSKASAAYANGVLKLNFPKREPLSARRLQIPIGDGEGAAPIGN 402
            PSMG EG LGMNLDFHETN GYELSADLPGM KEDIKVDIDSESGVLTVTGERKQEREEKSEG NE+RKYHF+ERS+GKTTRS+RLPDTA TSKASA Y NGVLK+NFPKREP SARRLQIPIGDGEGAAP  N
Sbjct:   54 PSMGVEGGLGMNLDFHETNKGYELSADLPGMKKEDIKVDIDSESGVLTVTGERKQEREEKSEGDNEQRKYHFLERSYGKTTRSVRLPDTAATSKASAEYVNGVLKINFPKREPPSARRLQIPIGDGEGAAPSEN 187          
BLAST of mRNA_A-nodosum_M_contig840.24.1 vs. uniprot
Match: D7FUU6_ECTSI (Small heat shock protein heat shock protein 20 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUU6_ECTSI)

HSP 1 Score: 153 bits (387), Expect = 8.520e-41
Identity = 76/127 (59.84%), Postives = 99/127 (77.95%), Query Frame = 1
Query:    4 SMGGEGC--LGMNLDFHETNTGYELSADLPGMNKEDIKVDIDSESGVLTVTGERKQEREEKSEGGNERRKYHFVERSFGKTTRSIRLPDTADTSKASAAYANGVLKLNFPKREPLSARRLQIPIGDG 378
            S+ G+G   LGM+LDFHET  G+EL ADLPGM KED+ +D+D ESGVLTV+GERK E+EEK +G +  RKYHFVERS+GKT+RS+RLP+ ADT+ A+A   +GVL + FPK+E   + R +IP+G G
Sbjct:   54 SLFGDGSRSLGMSLDFHETKDGFELIADLPGMKKEDVSIDVDQESGVLTVSGERKSEKEEKGDGKDGDRKYHFVERSYGKTSRSVRLPEAADTATANADLTDGVLTITFPKKEAPVSSRFRIPLGGG 180          
BLAST of mRNA_A-nodosum_M_contig840.24.1 vs. uniprot
Match: A0A6H5KKF0_9PHAE (HSP20 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKF0_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 2.970e-38
Identity = 70/120 (58.33%), Postives = 93/120 (77.50%), Query Frame = 1
Query:   13 GEGCLGMNLDFHETNTGYELSADLPGMNKEDIKVDIDSESGVLTVTGERKQEREEKSEGGNERRKYHFVERSFGKTTRSIRLPDTADTSKASAAYANGVLKLNFPKREPLSARRLQIPIG 372
            G   L MNLDFHET  G+EL ADLPGM +ED+ +D+D ESGVLTV+GERK +REEK +  +  RKYHFVERS+GKT+RS+RLP+ A+T+ A+A   +GVL + FPK+E  ++ R +IP+G
Sbjct:   29 GSRSLDMNLDFHETKDGFELIADLPGMKQEDVSIDVDQESGVLTVSGERKSKREEKRDDKDGDRKYHFVERSYGKTSRSVRLPEAANTANANADLTDGVLTITFPKKEAPASSRFRIPLG 148          
BLAST of mRNA_A-nodosum_M_contig840.24.1 vs. uniprot
Match: A0A6H5JFM4_9PHAE (HSP20 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFM4_9PHAE)

HSP 1 Score: 147 bits (371), Expect = 4.120e-38
Identity = 71/120 (59.17%), Postives = 93/120 (77.50%), Query Frame = 1
Query:   13 GEGCLGMNLDFHETNTGYELSADLPGMNKEDIKVDIDSESGVLTVTGERKQEREEKSEGGNERRKYHFVERSFGKTTRSIRLPDTADTSKASAAYANGVLKLNFPKREPLSARRLQIPIG 372
            G   L MNLDFHET  G+EL ADLPGM +ED+ +D+D ESGVLTV+GERK EREEK +  +  RKYHFVERS+GKT+RS+RLP+ A+T+ A+A   +GVL + FPK+E  ++ R +IP+G
Sbjct:   84 GSRSLDMNLDFHETKDGFELIADLPGMKQEDVSIDVDQESGVLTVSGERKSEREEKRDDKDGDRKYHFVERSYGKTSRSVRLPEAANTANANADLTDGVLTITFPKKEAPASSRFRIPLG 203          
BLAST of mRNA_A-nodosum_M_contig840.24.1 vs. uniprot
Match: A0A7C4SPX8_9PROT (Hsp20/alpha crystallin family protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A7C4SPX8_9PROT)

HSP 1 Score: 101 bits (251), Expect = 6.080e-22
Identity = 51/112 (45.54%), Postives = 75/112 (66.96%), Query Frame = 1
Query:   34 NLDFHETNTGYELSADLPGMNKEDIKVDIDSESGVLTVTGERKQEREEKSEGGNERRKYHFVERSFGKTTRSIRLPDTADTSKASAAYANGVLKLNFPKREPLSARRLQIPI 369
            N+D HE   G  +SADLPGM ++D++V+ID+   VLT++GERK +RE+K +       YH +ER +GK +RS  LP+T DT K  A   NGVL+++ PKRE    R+++I +
Sbjct:   43 NVDIHEDKDGINISADLPGMTQKDVQVNIDN--NVLTLSGERKLDREDKKDN------YHRIERFYGKFSRSFSLPNTVDTEKVEAHMENGVLRIHLPKREEAKPRQIEIKV 146          
BLAST of mRNA_A-nodosum_M_contig840.24.1 vs. uniprot
Match: A0A3C1Z549_9BACT (Heat-shock protein Hsp20 n=2 Tax=Nitrospira TaxID=1234 RepID=A0A3C1Z549_9BACT)

HSP 1 Score: 99.4 bits (246), Expect = 3.420e-21
Identity = 50/111 (45.05%), Postives = 72/111 (64.86%), Query Frame = 1
Query:   37 LDFHETNTGYELSADLPGMNKEDIKVDIDSESGVLTVTGERKQEREEKSEGGNERRKYHFVERSFGKTTRSIRLPDTADTSKASAAYANGVLKLNFPKREPLSARRLQIPI 369
            +D  ET   Y + A+LP + +ED+KV +  E GVLT+ GERKQE+EEK       +KYH VERS+G+  R+  LPDT D SK  A YA+G+L L+ PK E    +++++ +
Sbjct:   48 VDISETEAEYAIKAELPEVKREDVKVTV--EDGVLTIQGERKQEKEEKG------KKYHRVERSYGRFVRTFTLPDTVDESKVKAEYADGILHLHLPKSEKAKPKQIEVKV 150          
BLAST of mRNA_A-nodosum_M_contig840.24.1 vs. uniprot
Match: D8PFX6_9BACT (Heat shock protein, Hsp20 family n=5 Tax=Nitrospira TaxID=1234 RepID=D8PFX6_9BACT)

HSP 1 Score: 95.9 bits (237), Expect = 6.210e-20
Identity = 49/111 (44.14%), Postives = 71/111 (63.96%), Query Frame = 1
Query:   37 LDFHETNTGYELSADLPGMNKEDIKVDIDSESGVLTVTGERKQEREEKSEGGNERRKYHFVERSFGKTTRSIRLPDTADTSKASAAYANGVLKLNFPKREPLSARRLQIPI 369
            +D  ET + Y + A+LP + KED+KV +  E  VLT+ GERKQE+E+K       +KYH +ERS+G+  RS  LPD+ D SK  A YA+G+L L+ PK E    +++ + I
Sbjct:   48 VDISETESEYAIKAELPEVKKEDVKVTV--EDAVLTIQGERKQEKEDKG------KKYHRIERSYGRFVRSFTLPDSVDESKVRAEYADGILHLHLPKSEKAKPKQIDVKI 150          
BLAST of mRNA_A-nodosum_M_contig840.24.1 vs. uniprot
Match: A0A7Y8HTY7_9BACT (Hsp20/alpha crystallin family protein n=1 Tax=Nitrospirae bacterium TaxID=2026887 RepID=A0A7Y8HTY7_9BACT)

HSP 1 Score: 95.1 bits (235), Expect = 1.120e-19
Identity = 47/113 (41.59%), Postives = 70/113 (61.95%), Query Frame = 1
Query:   34 NLDFHETNTGYELSADLPGMNKEDIKVDIDSESGVLTVTGERKQEREEKSEGGNERRKYHFVERSFGKTTRSIRLPDTADTSKASAAYANGVLKLNFPKREPLSARRLQIPIG 372
            ++D  ET+  Y + A++P + KED+KV +  E GVLT+ GERKQE+EEK       ++YH VERS+G+  RS  LPD  D  K  A + +G+L L  PK E    + +++ +G
Sbjct:   45 SVDVSETDGAYHIKAEIPDVKKEDVKVTL--EDGVLTIQGERKQEKEEKG------KRYHRVERSYGRFVRSFTLPDVVDEGKVKAEFKDGILNLELPKSEKAKPKAIEVKVG 149          
BLAST of mRNA_A-nodosum_M_contig840.24.1 vs. uniprot
Match: UPI0009C3D03C (Hsp20/alpha crystallin family protein n=1 Tax=Alcanivorax xenomutans TaxID=1094342 RepID=UPI0009C3D03C)

HSP 1 Score: 94.4 bits (233), Expect = 1.630e-19
Identity = 54/122 (44.26%), Postives = 79/122 (64.75%), Query Frame = 1
Query:    4 SMGGEGCLGMNLDFHETNTGYELSADLPGMNKEDIKVDIDSESGVLTVTGERKQEREEKSEGGNERRKYHFVERSFGKTTRSIRLPDTADTSKASAAYANGVLKLNFPKREPLSARRLQIPI 369
            SM  EG + M +D  ET+  Y +SA+LPG+ KEDIKV +D+  GVLT+ GER ++ EEK+E      KY+  ERSFG+ +RS  LP++    + +A Y  G++++  PK E  SA R ++PI
Sbjct:   26 SMDNEGWMPM-VDVRETDAAYVVSAELPGIAKEDIKVVVDN--GVLTLQGERHRDEEEKNE------KYYRRERSFGRFSRSFSLPESVAADEITAKYREGIMEIRLPKTERQSAHRTEVPI 138          
BLAST of mRNA_A-nodosum_M_contig840.24.1 vs. uniprot
Match: A0A7V6BE62_9BACT (Hsp20/alpha crystallin family protein n=1 Tax=Verrucomicrobia subdivision 3 bacterium TaxID=2052186 RepID=A0A7V6BE62_9BACT)

HSP 1 Score: 94.7 bits (234), Expect = 1.630e-19
Identity = 51/111 (45.95%), Postives = 71/111 (63.96%), Query Frame = 1
Query:   37 LDFHETNTGYELSADLPGMNKEDIKVDIDSESGVLTVTGERKQEREEKSEGGNERRKYHFVERSFGKTTRSIRLPDTADTSKASAAYANGVLKLNFPKREPLSARRLQIPI 369
            +D  ETN  Y + A+LP + KED+KV +  E+GVLTV+GERK E+EEK        KYH VERS+G   RS  LPD AD +K SA + +G+LK++  K E    R +++ +
Sbjct:   48 VDISETNNEYLIKAELPEVKKEDVKVSV--ENGVLTVSGERKFEKEEKGV------KYHRVERSYGSFVRSFSLPDDADENKVSAEFKDGILKIHIQKNEKARPRAIEVKV 150          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig840.24.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
B3VMZ8_FUCSE2.970e-7188.06Heat shock protein 20 n=2 Tax=Fucus serratus TaxID... [more]
D7FUU6_ECTSI8.520e-4159.84Small heat shock protein heat shock protein 20 n=1... [more]
A0A6H5KKF0_9PHAE2.970e-3858.33HSP20 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
A0A6H5JFM4_9PHAE4.120e-3859.17HSP20 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
A0A7C4SPX8_9PROT6.080e-2245.54Hsp20/alpha crystallin family protein n=1 Tax=Prot... [more]
A0A3C1Z549_9BACT3.420e-2145.05Heat-shock protein Hsp20 n=2 Tax=Nitrospira TaxID=... [more]
D8PFX6_9BACT6.210e-2044.14Heat shock protein, Hsp20 family n=5 Tax=Nitrospir... [more]
A0A7Y8HTY7_9BACT1.120e-1941.59Hsp20/alpha crystallin family protein n=1 Tax=Nitr... [more]
UPI0009C3D03C1.630e-1944.26Hsp20/alpha crystallin family protein n=1 Tax=Alca... [more]
A0A7V6BE62_9BACT1.630e-1945.95Hsp20/alpha crystallin family protein n=1 Tax=Verr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig840contigA-nodosum_M_contig840:315226..316822 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FUU6
PFAMsCBS,HSP20
Model size1288
Max annot lvl2759|Eukaryota
KEGG koko:K07200,ko:K13993
KEGG Pathwayko04068,ko04141,ko04152,ko04211,ko04213,ko04371,ko04530,ko04710,ko04714,ko04910,ko04920,ko04921,ko04922,ko04931,ko04932,ko05410,map04068,map04141,map04152,map04211,map04213,map04371,map04530,map04710,map04714,map04910,map04920,map04921,map04922,map04931,map04932,map05410
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
Exons2
Evalue3.78e-46
EggNOG OGsCOG0071@1|root,KOG0710@2759|Eukaryota
Descriptionresponse to heat
Cds size399
COG categoryO
BRITEko00000,ko00001,ko03110
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870201.5464709-UTR-A-nodosum_M_contig840:315225..3161081680870201.5464709-UTR-A-nodosum_M_contig840:315225..316108Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig840 315226..316108 -
1680870201.5792065-UTR-A-nodosum_M_contig840:316816..3168221680870201.5792065-UTR-A-nodosum_M_contig840:316816..316822Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig840 316817..316822 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870201.5584166-CDS-A-nodosum_M_contig840:316108..3163071680870201.5584166-CDS-A-nodosum_M_contig840:316108..316307Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig840 316109..316307 -
1680870201.5688334-CDS-A-nodosum_M_contig840:316616..3168161680870201.5688334-CDS-A-nodosum_M_contig840:316616..316816Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig840 316617..316816 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig840.24.1prot_A-nodosum_M_contig840.24.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig840 316109..316816 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig840.24.1

>prot_A-nodosum_M_contig840.24.1 ID=prot_A-nodosum_M_contig840.24.1|Name=mRNA_A-nodosum_M_contig840.24.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=133bp
MGGEGCLGMNLDFHETNTGYELSADLPGMNKEDIKVDIDSESGVLTVTGE
RKQEREEKSEGGNERRKYHFVERSFGKTTRSIRLPDTADTSKASAAYANG
VLKLNFPKREPLSARRLQIPIGDGEGAAPIGN*
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mRNA from alignment at A-nodosum_M_contig840:315226..316822-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig840.24.1 ID=mRNA_A-nodosum_M_contig840.24.1|Name=mRNA_A-nodosum_M_contig840.24.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1597bp|location=Sequence derived from alignment at A-nodosum_M_contig840:315226..316822- (Ascophyllum nodosum dioecious)
CCCAGTATGGGCGGTGAAGGATGCCTCGGTATGAACCTCGACTTCCACGA GACCAACACGGGGTACGAGCTGAGCGCCGATCTTCCCGGCATGAATAAAG AGGACATCAAGGTGGACATCGACAGTGAGTCCGGGGTTCTGACCGTGACT GGAGAACGCAAGCAGGAGAGGGAAGAGAAGAGCGAAGGGGGCAACGAACG GCGCAAGTGAGTGACTAGCCTTTTCTGAATTTGTCCTGTGCTCCTTTCCT TCCTTGCCCTAAATTTTATACATGACTCGGAATTGTGACTTCATTTCTTT TCCGGTCAGACACGATGTCACTGTGCCTCCCGGGGTCGGCTGCGTGCATG CTTCTGTGGACAAATCGCTGCAGAATAGCGTGAAGCACAACAGCCGCCAT TTATACCGTGCTTCTATCTACAGTATACTTGCCGTTGCTCAGCCCAAACC CTCGCGGCTCACGACTTCGAATCCACTCGATCGGTCATGTGTAATTTATT TGCACGAAATCTCAGGTACCATTTCGTGGAGCGCTCCTTTGGCAAGACCA CCCGTTCCATCCGCCTCCCAGACACGGCCGACACTTCCAAGGCTAGTGCC GCCTACGCCAACGGAGTGCTGAAGCTCAACTTCCCCAAGCGGGAACCTCT CTCCGCCCGTCGTCTTCAGATTCCCATCGGCGACGGCGAAGGAGCGGCCC CTATCGGGAACTGAGTAGCTTTCGTTGCATCTTAGGGCGGCGCACTTTGT CTAGGTTTGGGGGTGACTTCTAGATAGATATAATTGACTCAGAACGTGAA TGAGATGCCGCGTATGGGGGAGAATGGTATCCTGGCCAGTTTCCATGTTT CCGGCGTTCTGTGTAGGAGTCGGAACATAGCAAGGCCGACATTATTAGTT GTTAGGTCATTACAGCAGGAAGACGAGAACCACGGGATACAGAGCACAAA ACGCTTGTCTTGTGAGAAAGCATGTCGGAGGAGGAGGTGGTTGACTCAAT CTCGTTCCGGGGGTTTGCAGTCAACGCAAGGTCAAACGTTGGATGATCGA CAGGAAGCTGCTGAATCGCTTTATCCTAGCGTCTTTTGGATTAACATTTC TTAAGACGCGCCTCTCCGATCAGTTAGTCGCAGTTCAAATCTGTCCCTGC TGCAGTATAAGCGAATGTTTTGTGCTGGGAATGTGTGTGTCTTGCTTTTG CTTTTGTCGTATGCGGTGCTTTTACTTTGACGTTGTAGTCTCCAGTGATA TGATTGAAATTATGCCTTGCTTTTGTCATATGCTGTTGTATGATGGCGGG GGTATCTCAAAGGGTATGCAAGTGAAATATATCGAAGACCACGGTGTGTG TGTAGAGCTCACCCCGCAGTCGTTTCAATGTTGAATCTCTCGCCCTTTTT ATTAAATAGTTATGTGGAAACGCCACCCAAAACGCGCGCGAGCCAATTCA AATCGAAAAGTCTGTCCCGCAAGAAGACAAGACCCCATGCAACACAAGAG AGGGGCAATGCGATGGGGGAAAGACCGATACACACCCCGCGAAGACTTCA CAGTGACGTTCTTGTCATGCCGACTTGACATTTCAAATTTCCAACTT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig840:315226..316822-

>mRNA_A-nodosum_M_contig840.24.1 ID=mRNA_A-nodosum_M_contig840.24.1|Name=mRNA_A-nodosum_M_contig840.24.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=399bp|location=Sequence derived from alignment at A-nodosum_M_contig840:315226..316822- (Ascophyllum nodosum dioecious)
ATGGGCGGTGAAGGATGCCTCGGTATGAACCTCGACTTCCACGAGACCAA
CACGGGGTACGAGCTGAGCGCCGATCTTCCCGGCATGAATAAAGAGGACA
TCAAGGTGGACATCGACAGTGAGTCCGGGGTTCTGACCGTGACTGGAGAA
CGCAAGCAGGAGAGGGAAGAGAAGAGCGAAGGGGGCAACGAACGGCGCAA
GTACCATTTCGTGGAGCGCTCCTTTGGCAAGACCACCCGTTCCATCCGCC
TCCCAGACACGGCCGACACTTCCAAGGCTAGTGCCGCCTACGCCAACGGA
GTGCTGAAGCTCAACTTCCCCAAGCGGGAACCTCTCTCCGCCCGTCGTCT
TCAGATTCCCATCGGCGACGGCGAAGGAGCGGCCCCTATCGGGAACTGA
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