mRNA_A-nodosum_M_contig840.19.6 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig840.19.6
Unique NamemRNA_A-nodosum_M_contig840.19.6
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig840.19.6 vs. uniprot
Match: D7FKD4_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKD4_ECTSI)

HSP 1 Score: 363 bits (933), Expect = 5.630e-116
Identity = 222/405 (54.81%), Postives = 271/405 (66.91%), Query Frame = 2 
Query:  644 VAADRVFEFGQLFQKYDTDGDGRLGRAEFERMIGGMLDGLGRAKISSSKEANSDDKEDYGRRGDQGADKAAAETNGGGRPKDMSREFGNAPLVAPPPSSPLSGGGAITHYNETTGVPLSREAVASQQTLGHTVVPLNEAYSRRLSRLQTLLSSRLMPVREQLLQLRRRYHTRADEVKAARATIERETMADGGVILERLRSAESLKQAVTQVARGCCKLIQFWRQGRSTRPEYYLSKVSRLTS-PASIPGFTFSAVRYAHDPESVEKRVELIQSYPELCGCIDSAANKPFAKTVDVRVDDLPHETAERLEVLQRADRYERALSVKEHMLWTTIQESQALEERYHQERNLGQEFAEEAQKWVALAGRLSDDVNALKKEVEQTERLREENIILARENRNLLLRLEELE 1855
            + ++++FEFGQLFQK+DTDGDGRLGRA+FERM+GGML                   E +G RG+ G  +                             SP+  G +ITHY+ETTGVPL+REAVASQQ LGHTVVPL EAYSRRLSRLQ+L SSRLMPVRE+LLQLRRR H R +E+ AARA IERET+AD   I+ERLRSAE+LKQA   +A+G   +            E    +V+R+T  P+S PG    +   A D E  E+ VEL+QSY ELC  ID  ANKPF  ++DV+ DD  HETAERLEVL+RADRYE ALSVK+ MLW  +QESQ LEE+  +ER+LGQEFAEEAQ+WV L  +LSD VNAL  E E+T +LR+EN +LAREN+ L+ RLE LE
Sbjct:    1 MGSEKIFEFGQLFQKFDTDGDGRLGRADFERMVGGML-------------------EQFGERGEDGT-RRGXXXXXXXXXXXXXXXXXXXXXXXXXXXSPV--GPSITHYDETTGVPLAREAVASQQALGHTVVPLREAYSRRLSRLQSLASSRLMPVRERLLQLRRRLHGRGEELTAARAAIERETLADAEAIVERLRSAETLKQAT--LAQGVNSVT-----AELEGVEKLSDQVARVTLLPSSTPGSMSPSAACAPDFEGTERMVELVQSYRELCNSIDRVANKPFDPSIDVQADDFSHETAERLEVLRRADRYEHALSVKDQMLWEAMQESQRLEEKCQEERSLGQEFAEEAQEWVTLTEKLSDRVNALTVETERTAQLRKENALLARENQELVRRLETLE 376
[Close]
BLAST of mRNA_A-nodosum_M_contig840.19.6 vs. uniprot
Match: A0A6H5JBH8_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBH8_9PHAE)

HSP 1 Score: 330 bits (845), Expect = 2.900e-102
Identity = 226/484 (46.69%), Postives = 271/484 (55.99%), Query Frame = 2 
Query:  509 RFARNGGVDAMSFQRVWRER-------DKARAGTTAAVADL----------GRDQELGGSGGVAADRVFEFGQLFQKYDTDGDGRLGRAEFERMIGGMLDGLGRAKISSSKEANSDDKEDYGRRGDQGADKAAAETNGGGRPKDMSREFGNAPLVAPPP------SSPLSGGGAITHYNETTGVPLSREAVASQQTLGHTVVPLNEAYSRRLSRLQTLLSSRLMPVREQLLQLRRRYHTRADEVKAARATIERETMADGGVILERLRSAESLKQAVTQVARGCCKLIQFWRQG-RSTRPEYYLSKVSRLTSPASIPGFTFSAVRYAHDPESVEKRVELIQSYPELCGCIDSAANKPFAKTVDVRVDDLPHETAERLEVLQRADRYERALSVKEHMLWTTIQ--------------------------------ESQALEERYHQERNLGQEFAEEAQKWVALAGRLSDDVNALKKEVEQTERLR 1792
            RFARNGGVDA  FQRVWRER       D A  G      +           GR +E  G GGV  +++FEFG+LFQK+DTDGDGRLGRA+FER++GGML+ +G                      ++G D     + GG        + GNAP  AP P            G +ITHY+ETTGVPL+REAVASQQ LGHTVVPL EAYSRRLSRLQ                LRRR H R +E++AARA IERET+AD   I+ERLRSAE+LKQA+               QG  S   E  L  V +L+   +        +  A D E  E+ VEL+QSY ELC  ID  ANKPF  T+DV+ DD PHETAERLEVL+RADRYE ALSVK+ MLW  +Q                                ESQ LEE+  +ER+LG+EFAEEAQ+WV L G+LSD VNAL  E E+T +LR
Sbjct:    7 RFARNGGVDAKDFQRVWREREHLFSEPDPAPGGDVGGREEASRPGGEARREGRREE--GGGGVGPEKIFEFGKLFQKFDTDGDGRLGRADFERLVGGMLEQVG----------------------ERGGDGTRRGSRGG------EXDNGNAPSAAPQPLPXXXXXXXXXAGPSITHYDETTGVPLAREAVASQQALGHTVVPLREAYSRRLSRLQ----------------LRRRLHGRGEELRAARAAIERETLADAEAIVERLRSAETLKQAMLT-------------QGVNSVTAE--LEGVEKLSDQTACR--VLMDLVCATDFEGTERMVELVQSYRELCNSIDRVANKPFDPTIDVQADDFPHETAERLEVLRRADRYEHALSVKDQMLWEAMQVSDCRLQSSEMLADKVASEVSPVVSLTTALSSESQRLEEKCQEERSLGREFAEEAQEWVTLTGKLSDRVNALTVEAERTAQLR 427
[Close]
BLAST of mRNA_A-nodosum_M_contig840.19.6 vs. uniprot
Match: A0A835Z0R6_9STRA (EF-hand domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0R6_9STRA)

HSP 1 Score: 248 bits (632), Expect = 8.330e-71
Identity = 168/417 (40.29%), Postives = 238/417 (57.07%), Query Frame = 2 
Query:  662 FEFGQLFQKYDTDGDGRLGRAEFERMIGGMLDGLGRAKISSSKEANSDDKEDYGRRGDQGADKAAAETNGGGRP-----------KDMSREFGNAPLVAPPPSSP----------LSGGGAITHYNETTGVPLSREAVASQQTLGHTVVPLNEAYSRRLSRLQTLLSSRLMPVREQLLQLRRRYHTRADEVKAARATIERETMADGGVILERLRSAESLKQAVTQ--VARGCCKLIQFWRQGRSTRPEYYLSKVSRLTSPASIPGFTFSAVRYAHDPESVEKRVELIQSYPELCGCIDSAANKPFAKTVDVRVDDLPHETAERLEVLQRADRYERALSVKEHMLWTTIQESQALEERYHQERNLGQEFAEEAQKWVALAGRLSDDVNALKKEVEQTERLREENIILARENRNLLLRL 1843
            FE GQLF+++D+D DGRL RAEFE+++          ++   ++  + D + Y          A A T   G P           + M+ +  N     P P++           L G   +THYNET GVPL ++AV  Q  LGHTVVPL+EAYSRRL+RLQ L++S+L+P REQLLQLRRR   R +EV++A+A IERETMAD   ILERLRSAE+LK A  +  ++    +L Q  R  +         +V+         G    A RY H+ ES  K +EL+QSY +LC  ++ AA++    ++ V  +D P ETAERLEVL+RADRYE+AL++K+ M+W  +QE+  + E+   E  L +E+A E  +WV L  RL+  ++ L+ E  +   L +EN  L  +NR L  RL
Sbjct:   48 FEIGQLFERFDSDKDGRLTRAEFEKLMN--------LRVQQQRQ-QAPDPDQYSA--------ATAPTRLPGSPSPPRPPHHQRQRHMAADAPNMRWSQPAPAASAAAPSYGYPILPGALPLTHYNETAGVPLRKDAVEEQVALGHTVVPLHEAYSRRLARLQALVTSKLLPAREQLLQLRRRLLARGEEVQSAKAAIERETMADAHTILERLRSAEALKMATLEQRMSDVATELEQLDRLAQ---------QVAGAAGTQEQGGGMAGAERYTHEFESTAKMIELVQSYGDLCASVERAASRLQDTSIAVTPNDFPQETAERLEVLRRADRYEKALAIKDQMIWNLMQEASHVVEKATAEAVLSKEYANEMAEWVDLTNRLTAQISELRLENARVPALEQENAKLEEQNRMLRARL 438
[Close]
BLAST of mRNA_A-nodosum_M_contig840.19.6 vs. uniprot
Match: A0A7S3MHC0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MHC0_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 9.900e-18
Identity = 48/101 (47.52%), Postives = 68/101 (67.33%), Query Frame = 2 
Query:  962 ITHYNETTGVPLSREAVASQQTLGHTVVPLNEAYSRRLSRLQTLLSSRLMPVREQLLQLRRRYHTRADEVKAARATIERETMADGGVILERLRSAESLKQA 1264
            +THY+ET GV ++R  V   +++GH +VPL +AY  R  +L+ +L+ RL+P RE LLQLRR+    ++EV A +  IE+ET  D   IL RL SAES +QA
Sbjct:   72 LTHYDETAGVAIARYDVDQNKSMGHIIVPLTDAYKSRYEKLRAILTGRLLPKREHLLQLRRKLQKASEEVHAKKENIEKETRTDTDQILRRLDSAESFRQA 172
[Close]
BLAST of mRNA_A-nodosum_M_contig840.19.6 vs. uniprot
Match: A0A7R9YGK8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YGK8_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 5.830e-14
Identity = 38/88 (43.18%), Postives = 63/88 (71.59%), Query Frame = 2 
Query: 1496 NKPFAKTVDVRVDDLPHETAERLEVLQRADRYERALSVKEHMLWTTIQESQALEERYHQERNLGQEFAEEAQKWVALAGRLSDDVNAL 1759
            ++P    VDV VDDLP ETAERLEVL+RAD+YE AL++K+ MLW  +QE  AL ++  ++    ++F +E   W+ L+ ++++++++L
Sbjct:    1 SRPVGALVDVPVDDLPTETAERLEVLRRADKYEEALALKDAMLWELLQERDALTDKQEKDGKTLKDFEDEMANWLVLSDKMAEEISSL 88
[Close]
BLAST of mRNA_A-nodosum_M_contig840.19.6 vs. uniprot
Match: A0A2K3DR50_CHLRE (Uncharacterized protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3DR50_CHLRE)

HSP 1 Score: 81.6 bits (200), Expect = 2.280e-12
Identity = 76/255 (29.80%), Postives = 117/255 (45.88%), Query Frame = 2 
Query:  917 LVAPPPSSPLSGGGAITHYNETTGVPLSREAVASQQTL--GHTVVPLNEAYSRRLSRLQTLLSSRLMPVREQLLQLRRRYHTRADEVKAARATIERETMADGGVILERLRSAESLKQAVTQVARGCCKLIQFWRQGRS-TRPEYYLSKVSRLTSPASIPGFTFSAVRYAHDPESVEKRVELIQSYPELCGCIDSAANKPFAKTVDVRVDDLPHETAERLEVLQRADRYERALSVKEHMLWTTIQESQALEERYHQ 1672
            +V  P   PLS       Y++TT   +  + V +++    GH ++PL +AY  +L+ LQ  ++ +L+  RE LLQ   R   RA EV AARA +ER+  A    +L ++RSAESLKQA+                GR     +  L  + RL +         SA        S     + + +Y  L    D    +PF   VDV  DDLP E     ++ +      + L+VK+ M+   +QE +A++E   Q
Sbjct:  318 IVTGPGGQPLS-----LLYDDTTQEVVYADDVMARELAKQGHALLPLGDAYRGKLAALQAAVNGQLLAKREALLQQHARLAARAGEVAAARAGLERDVAALAEDMLGKVRSAESLKQALL---------------GREQAEVDAQLDAIGRLLNDI------VSA--------SAAGPADFLNAYRRLADACDRLVARPFKSEVDVAADDLPSEAGVYRQLAEAHGALAKLLAVKDQMIAHLLQEREAMQEELSQ 538
[Close]
BLAST of mRNA_A-nodosum_M_contig840.19.6 vs. uniprot
Match: A0A835T3Y5_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835T3Y5_9CHLO)

HSP 1 Score: 81.6 bits (200), Expect = 2.290e-12
Identity = 73/237 (30.80%), Postives = 111/237 (46.84%), Query Frame = 2 
Query:  971 YNETTGVPLSREAVASQQTL--GHTVVPLNEAYSRRLSRLQTLLSSRLMPVREQLLQLRRRYHTRADEVKAARATIERETMADGGVILERLRSAESLKQAVTQVARGCCKLIQFWRQGRS-TRPEYYLSKVSRLTSPASIPGFTFSAVRYAHDPESVEKRVELIQSYPELCGCIDSAANKPFAKTVDVRVDDLPHETAERLEVLQRADRYERALSVKEHMLWTTIQESQALEERYHQ 1672
            Y++TT   +  + V +++    GH ++PL +AY  +L+ LQ  ++ +L+  RE LLQ   R   RA EV AARA +ERE  A    +L ++RSAESLKQA+                GR     +  L  + RL +         SA        S    V+ + +Y  L    D    +PF   VDV  DDLP E     ++ +      + L+VK+ M+   +QE  A++E   Q
Sbjct:  338 YDDTTQEVVYADDVMARELAKQGHALLPLGDAYRGKLAALQAAVNGQLLAKREALLQQHARLAARAGEVAAARAGLEREVSALAEDMLGKVRSAESLKQALL---------------GREQAEVDGQLDAIGRLLTDV------VSA--------SAAGPVDFLNAYRRLADTCDRLVARPFKSEVDVAADDLPAEAGVYRQLAEAHGALAKLLAVKDQMIAHLLQERDAMQEELSQ 545
[Close]
BLAST of mRNA_A-nodosum_M_contig840.19.6 vs. uniprot
Match: A0A835SKQ4_CHLIN (Uncharacterized protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835SKQ4_CHLIN)

HSP 1 Score: 80.5 bits (197), Expect = 2.530e-12
Identity = 72/237 (30.38%), Postives = 111/237 (46.84%), Query Frame = 2 
Query:  971 YNETTGVPLSREAVASQQT--LGHTVVPLNEAYSRRLSRLQTLLSSRLMPVREQLLQLRRRYHTRADEVKAARATIERETMADGGVILERLRSAESLKQAVTQVARGCCKLIQFWRQGRS-TRPEYYLSKVSRLTSPASIPGFTFSAVRYAHDPESVEKRVELIQSYPELCGCIDSAANKPFAKTVDVRVDDLPHETAERLEVLQRADRYERALSVKEHMLWTTIQESQALEERYHQ 1672
            Y++TT   +  + V +++    GH ++PL +AY  +L+ LQ  ++ +L+  RE LLQ   R   RA EV AARA +ERE  A    +L ++RSAESLKQA+                GR     +  L  + RL       G   +A        S    V+ + +Y  +    D    +PF   VDV  DDLP E     ++ +      + L+VK+ M+   +QE  A++E   Q
Sbjct:  147 YDDTTQEVVYADDVMARELGKQGHALLPLGDAYRGKLAALQAAVNGQLLAKREALLQQHARLAARAGEVAAARAGLEREVTALAEDMLGKVRSAESLKQALL---------------GRDQAEVDGQLDAIGRLL------GEVVAA--------SAAGPVDFLNAYRRMADTCDRLVARPFKSEVDVAADDLPAEAGVYRQLAEAHGALAKLLAVKDQMISHLLQERDAMQEELSQ 354
[Close]
BLAST of mRNA_A-nodosum_M_contig840.19.6 vs. uniprot
Match: A0A150GBK3_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GBK3_GONPE)

HSP 1 Score: 72.4 bits (176), Expect = 2.310e-10
Identity = 47/120 (39.17%), Postives = 70/120 (58.33%), Query Frame = 2 
Query:  914 PLVAPPPSSPLSGGGAITHYNETTGVPLSREAVASQQTL--GHTVVPLNEAYSRRLSRLQTLLSSRLMPVREQLLQLRRRYHTRADEVKAARATIERETMADGGVILERLRSAESLKQAV 1267
            P++  PP +   G G +  Y++TT   +   +V + +    GH++ PL+EAY  +L+ LQ  ++  L+  R+ LLQ   R   RA EV A RA +ERE  A    ++ RLRSAESLKQA+
Sbjct:   73 PVLPVPPYAQQLGPGYVQLYDDTTQEVVVASSVLANELARQGHSLAPLHEAYRSKLAALQATVNGSLLAKRDALLQQHARLAARAGEVAAKRAALEREAAALADDMIRRLRSAESLKQAL 192
[Close]
BLAST of mRNA_A-nodosum_M_contig840.19.6 vs. uniprot
Match: A0A7S1C795_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C795_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 4.270e-8
Identity = 59/182 (32.42%), Postives = 80/182 (43.96%), Query Frame = 2 
Query: 1055 EAYSRRLSRLQTLLSSRLMPVREQLLQLRRRYHTRADEVKAARATIERETMADGGVILERLRSAESLKQAV-----TQVARGCCKLIQFWRQGRSTRPEYYLSKVSRLTSPASIPGFTFSAVRYAHDPESVEKRVELIQSYPELCGCIDSAANKPFAKTVDVRVDDLPHETAERLEVLQRAD 1585
            EAY  +L  L ++ S+ LM  RE+++Q       RA+EVKAAR  IERET AD   IL RLRSAE+ K ++     +++      +  F  Q     P+                G        A            +Q +PEL    D  A KP   +VDVR DD   E   R E  +RA+
Sbjct:   11 EAYRAKLGSLASV-SATLMAKRERIVQQALSVQARAEEVKAARRAIERETTADTEAILHRLRSAEAFKLSLLSHDLSELQVDIAAIDAFQAQFAQAHPQQ-----------GGGGGMXXXXXXXAS--------AAFLQKFPELAAEADRLAAKPVKLSVDVRADDFDREVFRRNEAARRAE 172
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig840.19.6 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D7FKD4_ECTSI5.630e-11654.81EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5JBH8_9PHAE2.900e-10246.69EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
A0A835Z0R6_9STRA8.330e-7140.29EF-hand domain-containing protein n=1 Tax=Tribonem... [more]
A0A7S3MHC0_9STRA9.900e-1847.52Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7R9YGK8_9STRA5.830e-1443.18Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A2K3DR50_CHLRE2.280e-1229.80Uncharacterized protein n=1 Tax=Chlamydomonas rein... [more]
A0A835T3Y5_9CHLO2.290e-1230.80Uncharacterized protein n=1 Tax=Chlamydomonas schl... [more]
A0A835SKQ4_CHLIN2.530e-1230.38Uncharacterized protein n=1 Tax=Chlamydomonas ince... [more]
A0A150GBK3_GONPE2.310e-1039.17Uncharacterized protein n=1 Tax=Gonium pectorale T... [more]
A0A7S1C795_9STRA4.270e-832.42Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig840contigA-nodosum_M_contig840:190205..196217 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FKD4
PFAMszf-B_box
Model size2220
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons11
Evalue4.58e-119
EggNOG OGs2DZTU@1|root,2S7AK@2759|Eukaryota
Cds size1671
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig840.19.6prot_A-nodosum_M_contig840.19.6Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig840 190519..195982 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870200.7681048-UTR-A-nodosum_M_contig840:190204..1905181680870200.7681048-UTR-A-nodosum_M_contig840:190204..190518Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig840 190205..190518 -
1680870200.9274573-UTR-A-nodosum_M_contig840:195982..1962171680870200.9274573-UTR-A-nodosum_M_contig840:195982..196217Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig840 195983..196217 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870200.7810102-CDS-A-nodosum_M_contig840:190518..1906291680870200.7810102-CDS-A-nodosum_M_contig840:190518..190629Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig840 190519..190629 -
1680870200.7941406-CDS-A-nodosum_M_contig840:190991..1911471680870200.7941406-CDS-A-nodosum_M_contig840:190991..191147Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig840 190992..191147 -
1680870200.8050132-CDS-A-nodosum_M_contig840:191331..1914271680870200.8050132-CDS-A-nodosum_M_contig840:191331..191427Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig840 191332..191427 -
1680870200.8151493-CDS-A-nodosum_M_contig840:191728..1918641680870200.8151493-CDS-A-nodosum_M_contig840:191728..191864Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig840 191729..191864 -
1680870200.8248067-CDS-A-nodosum_M_contig840:192171..1922271680870200.8248067-CDS-A-nodosum_M_contig840:192171..192227Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig840 192172..192227 -
1680870200.837578-CDS-A-nodosum_M_contig840:192636..1927261680870200.837578-CDS-A-nodosum_M_contig840:192636..192726Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig840 192637..192726 -
1680870200.84721-CDS-A-nodosum_M_contig840:192849..1930231680870200.84721-CDS-A-nodosum_M_contig840:192849..193023Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig840 192850..193023 -
1680870200.8581946-CDS-A-nodosum_M_contig840:193189..1933781680870200.8581946-CDS-A-nodosum_M_contig840:193189..193378Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig840 193190..193378 -
1680870200.885522-CDS-A-nodosum_M_contig840:194292..1945231680870200.885522-CDS-A-nodosum_M_contig840:194292..194523Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig840 194293..194523 -
1680870200.8990612-CDS-A-nodosum_M_contig840:194930..1950871680870200.8990612-CDS-A-nodosum_M_contig840:194930..195087Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig840 194931..195087 -
1680870200.9112437-CDS-A-nodosum_M_contig840:195707..1959821680870200.9112437-CDS-A-nodosum_M_contig840:195707..195982Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig840 195708..195982 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig840.19.6

>prot_A-nodosum_M_contig840.19.6 ID=prot_A-nodosum_M_contig840.19.6|Name=mRNA_A-nodosum_M_contig840.19.6|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=557bp
MPRSKERKKETEKATKSKSSSKEKKKKSSSRDRSSKSPTRSRKKLGADHE
FAAEPEASTQRQPIQAAPPPPLPPEKDQTASSDFEAGLLFQRFARNGGVD
AMSFQRVWRERDKARAGTTAAVADLGRDQELGGSGGVAADRVFEFGQLFQ
KYDTDGDGRLGRAEFERMIGGMLDGLGRAKISSSKEANSDDKEDYGRRGD
QGADKAAAETNGGGRPKDMSREFGNAPLVAPPPSSPLSGGGAITHYNETT
GVPLSREAVASQQTLGHTVVPLNEAYSRRLSRLQTLLSSRLMPVREQLLQ
LRRRYHTRADEVKAARATIERETMADGGVILERLRSAESLKQAVTQVARG
CCKLIQFWRQGRSTRPEYYLSKVSRLTSPASIPGFTFSAVRYAHDPESVE
KRVELIQSYPELCGCIDSAANKPFAKTVDVRVDDLPHETAERLEVLQRAD
RYERALSVKEHMLWTTIQESQALEERYHQERNLGQEFAEEAQKWVALAGR
LSDDVNALKKEVEQTERLREENIILARENRNLLLRLEELEGRRLHSVDGP
GTKEKT*
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mRNA from alignment at A-nodosum_M_contig840:190205..196217-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig840.19.6 ID=mRNA_A-nodosum_M_contig840.19.6|Name=mRNA_A-nodosum_M_contig840.19.6|organism=Ascophyllum nodosum dioecious|type=mRNA|length=6013bp|location=Sequence derived from alignment at A-nodosum_M_contig840:190205..196217- (Ascophyllum nodosum dioecious)
GCTCTTACAGCATCCGCTGCGATCCTGTGGAGCCCTCCAGTGTAGTTCGT
TTTCCCTCCAGGTGCTTCCAACTAGAGATTGCCACTTATCTTGAGGAAGA
TCAAGCTGGGCTGACACCGAACAGCTCACCTAGTATTTATTCGTACAATT
GGCACCGACGCAAGCAATCGCGTACGTATAGAATTGCGTTTAGGAAAATT
CCCCACGTATCAGGTGTATTGTACAGGACTCTATCATGCCACGTTCGAAG
GAAAGGAAGAAAGAAACGGAAAAGGCCACTAAATCAAAATCATCTTCCAA
AGAGAAAAAGAAAAAGAGCAGCAGCAGAGACAGAAGTAGTAAGAGTCCTA
CTAGGTCGAGGAAGAAGCTGGGGGCAGACCATGAGTTCGCAGCGGAGCCC
GAAGCATCGACGCAGCGGCAACCAATCCAAGCTGCGCCACCACCTCCATT
GCCTCCTGAGAAGGATCAAACAGCAAGCTCGGATTTTGAGGCCGGCTTAC
TGTTTCAAAGGTATGACGAGTATTTACCCCGAGCTGTCGGCGTGGCTCCA
TTAGCACCAGAGATTCGGGCGGGGCACTATTTATTCTTGATAGTTTGGTT
CTTGGTTTTGCCAACAAACACAATTTGGCACGGGCTGGCGGATCTAGGAA
AATATTTACCAGTAGTAGTACAGAAGTAGTCACTCGTACAACAAGGTGGT
ATCGACTTGTCGTAAGAAGCACGAGATATGAAGTACTGTATGTACAATTA
GCCACGACAGCCGTCTCTGCCTCCGAGTATTTCCTCGTCGACCTTTATGG
CTACATACAGCATCTAATCCACCTGTAAGGGCATTCCATACAGTACTGCA
GTTGCGCGCGAATAGCGGGCCGCGTCTAGGTACTTACAGTATACCTGGTA
TATTACTTGGTATGTATGTAGCTCTATGGACGTTTTTTTTGCTGGATCTG
GTATTTTTCCTAACCGACTGTGCGAGTTTCATTACCCACATCACTATACC
ACCAGCAGGCAATCTTATCCGGTTGATCCATACTCTGCTATATGTGATGA
CCATACACACTACCGGAATTAAAGCAGGCAGGGCAACTGCCAGCACCGGA
CGTTTCCGTGTCGTCGTCGGCTAATGTTAGGTTCGCAAGGAATGGAGGCG
TGGACGCCATGAGCTTTCAACGTGTGTGGAGAGAGCGAGACAAGGCGCGG
GCTGGAACGACAGCGGCGGTGGCGGATCTTGGCAGAGACCAGGAATTGGG
GGGAAGCGGAGGAGTTGCTGCGGACAGAGTTTTTGAGGTAAAATAGTAGT
TACGCATGATAAAATGAACTTACTTCACTCTCCACTGTATGTACCGACGA
AAGGCCGTGTGTGTGTGTGGTTTTGCCCTGCTTGGAGTCTGAAATACAAC
CCCTACAACGATGATGGTGGTATCGTTATCCTGGGAAATGGTTACTACGT
GGGGTCGGGCAGTGTGTCAAGCGGAGGGGAGAAGCACTATTATAGGTTCC
CAGCAACGTCTTCCTCGCCAAAATGGAGAATTCACAATATTAATATTAAT
ATTAATAGGATGAATCTACGCATTTGACAAGCCACCACGCTGATCTTCCC
AATAAGGAAAAATCTGCCCTGTTACTTTGATTTTTCCCTCTCGATCGACC
TCACGCTCGGACCATCGATGGGTCGCGGTGCACGTCGAAGTTAGTTCGGG
CAACTTTTCCAGAAGTATGACACGGATGGCGACGGTAGGCTGGGTCGGGC
AGAATTTGAGCGCATGATTGGAGGGATGTTGGACGGGCTCGGTCGGGCGA
AGATCTCTTCTAGCAAAGAGGCGAACTCAGACGACAAAGAAGACTACGGG
CGGCGTGGCGACCAAGGAGCGGATAAAGCTGCGGCTGAGACAAACGGTGG
TGGGAGGCCTAAGGATATGTCGCGGGTGAGCTAACGATGGACACATTGAG
AGTTGGAAAATCATCTCTTGGAGTCCGCTTATTCTAGAGGACGTTACTAG
CCTACTGGCAACACAGTCAAGACAGATGACAAGTCTTGTATCCCTGCTGA
TTGATCCAAGCTCGTTACCTTGATTGTGGGCTCTGTTAGCTGGCGACTAA
ACCATTGTACTCGGTACTCTGCCACGCGACTGACTGAGTAGTCCAATGTT
TTTTATTAAACAGTTGTACTAGGCACTCATTCACGTGGCTGAGTAGTTCA
ATGCTTTAGCCGCCTGCTAACAGGCTCGATTACATTGCAGCCACCAGATC
TACCGCCGATCTAAGCCACAGTCGGAGGGACAAAGCAAGGCCTCCATAAG
GTCTTGGTGGGACTCGTAAAGAGGGAAATAAATCACCTTGACCAATCAAG
GCTGAACTGGTCCAAAGCCCCACCTTCTCTTGGCCGCTTGGGTGTCTCGC
GATTTATTTCTTTTCAAAGTAAATTATTTCCCCCTCGAGGTTTTGCCATC
CTCACCGTAACATGAAAACTGCAATCCAATTATTTTTTTCCGCGAGGTTT
TATTCCTCGAAAGGATGGGATCGAACCCACGACCGAAATGTTTATAACCG
GAAATCAAGCACCTTGATCGGTCAGCGTCAGCGGCCGACTTTTTTACGGA
GTTAGTATCCGGAAACAATACCTACGGCGTGACGAGTACGAAATCAACTT
TAACCATTATTGATAGATGGGGAGCGGGCGTTGCACGAGCAATGGGCGCG
TTCCCAATCTTTGTCTCGCTCTTGTATCGCCAGGGAATTCCAAATGCGGT
ACCCCACCTGGCTCTACACGTTGACACGCGGAATATAAATCTGTATCCTA
ACTGATTCTACTTGTTCTGGCCAATCGGTCGCTGGTCAGGAGTTCGGGAA
CGCACCGTTGGTAGCACCTCCACCCTCCTCGCCGCTATCGGGGGGCGGGG
CGATAACCCACTACAACGAGACAACGGGCGTTCCTCTAAGTCGAGAGGCG
GTTGCTTCCCAGCAAACGCTTGGGCATACAGTGGTTCCACTTAACGAGGC
GTACAGCCGACGGTTGTCTCGACTACAGGTAGGACTCACTTTCTACCCAC
TTCCCTAGCATTTTGATTCTCTTGCTGGAAAACTGGCCAGCTGGTTTTGG
TTTGTATTTTTTGAAAACCCCCTTTGATCCGCGCCGCCATGAACCAACCG
CAACAACGCGACGCCCAACCCCCCGCCCCTCCATATGAATACAGACACTT
CTGTCCAGCAGACTGATGCCGGTTCGGGAACAACTCCTGCAACTCAGGCG
GCGGTACCACACACGCGCGGACGAGGTAAAGGCGGCGAGGGCGACAATTG
AGCGCGAGACCATGGCAGACGGCGGGGTCATCTTGGAGAGACTGCGCTCC
GCGGAATCATTGAAGCAGGTTCGGAACTAGCGAGGTTTTGCACTTTGCCT
TGTTTGTCGGACGGAAAACATTCTCGGGGAAGAATGTTTGTACGATCATA
TGCACTTCTTGTCCACTACCTTATTTCATTCCATCCAACAGGCAGTGACG
CAAGTGGCAAGAGGGTGCTGCAAACTAATTCAATTTTGGCGCCAAGGGAG
GTCAACACGACCGGAGTATTATCTTAGTAAGGTTGTATTAATAGTGTCCT
GAACGTTTTGACCCAAGTGTTTCTACTTTGTAGTAGCCATTTCCAAGTTC
TGTCTCCAATATCTTCTGTCGATCGAAATACCCCAAAGGCAAAGCTAACA
CAGGGAGTGAATGATGTCACCGCGGAACTTGAGGGAATTGAAAGGATTTC
TGATCAGGTGATCTAGCCGAGGTAGCGATTCAGTGACGTGGTGGCTCGGG
AGCATAATTTTACCAAGTGCTTGGTCAAGCACGGCCATCCACACTCGCGG
ACTGCCCGGAGTCGTTTAGATACTTTCGCCTTTTTTTGTGCTCTCTAGAG
CTATAAATAGTAGTCTAATGCTCACGCGGGCTGTTCGGCTGCATTATTAT
TACAGTTAGATCTGAATTTGATGCTGTTACAATTTTTCAGGTTTCACGGC
TTACCTCTCCAGCGTCGATTCCAGGCTTCACTTTTAGCGCTGTAAGGTAA
GCTCGATGGAGCACCGTTGAGTTAGACCCTCCCACTCACTCCAAACCAAG
GGGTGTGTAATTAGAGCGCGATGCGAACCTTAACGTGAAATCATATCTCA
GGGAAGAAGTACTTATTGTCCAGTCACAAGCGGCGTTTGCTTTGTGCCCT
TCATCGCCATTACTCGCCACTTGTTGGGCGTGAGCTGTGAAGCACTACTT
CGTCGGGCACTTTTGGGTCGAGAGTATGCTTCCGTTGTGTCAAGTGTCAG
GCTACCCTTGTGACTCTGCCATTTTCCGCGCCGTTCCTTCCTGCCGGGCT
CAGGTACGCTCACGACCCCGAGAGCGTAGAAAAAAGGGTAGAGCTCATTC
AGTCGTACCCAGAGCTGTGCGGCTGCATCGACAGCGCTGCAAACAAGCCG
TTCGCCAAGACAGTTGACGTGCGGGTAGACGATTTGCCGGTGAGCCCAGG
AACCGGCCAAGCTACTATTATAAGCCTTGTGGTGCGTTTTACGTATCTGA
CTAAACTACTGTATCCCCCGACGTATGCCGAATGTGATTGACACATGAAC
GTGCATGCTGTCCTTGGGGAAATAAATGCTTGCCATTCTGAAGAAATGCG
TTCGCACAAGTGCATCGTTAACACTGTAGCTGAGTCATTAGGTTTGGGAC
AGGGCTTGGTTTACTACTGGTATTTATTAATATTCAAGAAATCTTGATGA
ATCATTCCCCGGTTTTTGTGACCTTCGATCGGATGTTAAGCACGAGACCG
CAGAAAGACTCGAGGTTCTTCAACGAGCGGACCGCTACGAGCGAGCACTG
AGCGTCAAGGAACACATGCTATGGACAACCATACAGGTCAGCTGTGACTC
AAAGTTCCACGTATCAGAACGGGATGGTGGTCTTTCAGTCAAACCGACAG
TCTGAGCACACCCGAGCCAAAAATGTTTTCATGTACTCCAGACGCTCGAG
GTCTCTTACGGCGCGAACTTCTCCCTTGTTGTACTTCTATACTGTGGTTA
TTTCTTTGGATGACTGGTAGGAATCACAAGCGCTAGAGGAGAGGTATCAT
CAGGAGCGAAATCTGGGGCAAGAATTTGCCGAGGAGGCTCAGAAGTGGGT
TGCGCTCGCCGGGAGGCTATCTGACGACGTGAACGCATTGAAGAAAGAGG
TGGAGCAGACAGAGCGGTTGCGCGAGGTTAGGAAACGTGGCCATGTCAAT
TCATTAGCCTTGAGAAGAAGTACCAATCCGTGCATTTGTACAGCCCTGGA
TCGTGAGGAGATTAGTGGCTTCGAATATACGAAGTGTTCCACAAGATGTG
GCGCACCATTCGGTTGTCGGTAAATACCTAGTGGACACAAGATATATCTC
GTAGTTAACATCTCAATAAATAGTCTACAATTACAGCACTTCAAATGCTT
CGTATGTACTAAGTTACCAGGTATTACACAACATTACGTCAACATATCTC
AAGGGCTCCGAAGGTATCATGACACTGCATCGAAATTCGTGCTAGGTTCG
ACAAAACCTGCATACGTTTGCGCCTCCTAATCCATCAGGAAAATATCATC
CTTGCTCGAGAAAACCGCAACCTCTTGCTACGTCTTGAAGAGCTCGAAGG
GAGGCGCTTGCACAGCGTCGATGGGCCGGGAACAAAGGAGAAAACCTAGC
CCGAAAGTATTGTTGTCCACAAGACGGCCGCTTCGTGTGGAACGGTACAG
GCTCTTCAGTACACTCGTATGGTACCAATGGATGTAAACTTGGCCTCCCT
CATCTCCCTCTAGCCTCTTCCTACCCGAAAAAACAAACCTCATGCCTGTG
AAACCTGGTGGACTTTGATTGCCGAAGAACTGAACCGGAATATCAAAGGG
GTCCGACAATGAAACGTCCCGCATCATGAACCCTGACCTTTTTATTGCAA
ACCCCGGGGGACCCCAGAACTCTTCTGTCTGAACTTTTCAAGCCACGCCC
CAGTGGTACGCCC
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Coding sequence (CDS) from alignment at A-nodosum_M_contig840:190205..196217-

>mRNA_A-nodosum_M_contig840.19.6 ID=mRNA_A-nodosum_M_contig840.19.6|Name=mRNA_A-nodosum_M_contig840.19.6|organism=Ascophyllum nodosum dioecious|type=CDS|length=1671bp|location=Sequence derived from alignment at A-nodosum_M_contig840:190205..196217- (Ascophyllum nodosum dioecious)
ATGCCACGTTCGAAGGAAAGGAAGAAAGAAACGGAAAAGGCCACTAAATC
AAAATCATCTTCCAAAGAGAAAAAGAAAAAGAGCAGCAGCAGAGACAGAA
GTAGTAAGAGTCCTACTAGGTCGAGGAAGAAGCTGGGGGCAGACCATGAG
TTCGCAGCGGAGCCCGAAGCATCGACGCAGCGGCAACCAATCCAAGCTGC
GCCACCACCTCCATTGCCTCCTGAGAAGGATCAAACAGCAAGCTCGGATT
TTGAGGCCGGCTTACTGTTTCAAAGGTTCGCAAGGAATGGAGGCGTGGAC
GCCATGAGCTTTCAACGTGTGTGGAGAGAGCGAGACAAGGCGCGGGCTGG
AACGACAGCGGCGGTGGCGGATCTTGGCAGAGACCAGGAATTGGGGGGAA
GCGGAGGAGTTGCTGCGGACAGAGTTTTTGAGTTCGGGCAACTTTTCCAG
AAGTATGACACGGATGGCGACGGTAGGCTGGGTCGGGCAGAATTTGAGCG
CATGATTGGAGGGATGTTGGACGGGCTCGGTCGGGCGAAGATCTCTTCTA
GCAAAGAGGCGAACTCAGACGACAAAGAAGACTACGGGCGGCGTGGCGAC
CAAGGAGCGGATAAAGCTGCGGCTGAGACAAACGGTGGTGGGAGGCCTAA
GGATATGTCGCGGGAGTTCGGGAACGCACCGTTGGTAGCACCTCCACCCT
CCTCGCCGCTATCGGGGGGCGGGGCGATAACCCACTACAACGAGACAACG
GGCGTTCCTCTAAGTCGAGAGGCGGTTGCTTCCCAGCAAACGCTTGGGCA
TACAGTGGTTCCACTTAACGAGGCGTACAGCCGACGGTTGTCTCGACTAC
AGACACTTCTGTCCAGCAGACTGATGCCGGTTCGGGAACAACTCCTGCAA
CTCAGGCGGCGGTACCACACACGCGCGGACGAGGTAAAGGCGGCGAGGGC
GACAATTGAGCGCGAGACCATGGCAGACGGCGGGGTCATCTTGGAGAGAC
TGCGCTCCGCGGAATCATTGAAGCAGGCAGTGACGCAAGTGGCAAGAGGG
TGCTGCAAACTAATTCAATTTTGGCGCCAAGGGAGGTCAACACGACCGGA
GTATTATCTTAGTAAGGTTTCACGGCTTACCTCTCCAGCGTCGATTCCAG
GCTTCACTTTTAGCGCTGTAAGGTACGCTCACGACCCCGAGAGCGTAGAA
AAAAGGGTAGAGCTCATTCAGTCGTACCCAGAGCTGTGCGGCTGCATCGA
CAGCGCTGCAAACAAGCCGTTCGCCAAGACAGTTGACGTGCGGGTAGACG
ATTTGCCGCACGAGACCGCAGAAAGACTCGAGGTTCTTCAACGAGCGGAC
CGCTACGAGCGAGCACTGAGCGTCAAGGAACACATGCTATGGACAACCAT
ACAGGAATCACAAGCGCTAGAGGAGAGGTATCATCAGGAGCGAAATCTGG
GGCAAGAATTTGCCGAGGAGGCTCAGAAGTGGGTTGCGCTCGCCGGGAGG
CTATCTGACGACGTGAACGCATTGAAGAAAGAGGTGGAGCAGACAGAGCG
GTTGCGCGAGGAAAATATCATCCTTGCTCGAGAAAACCGCAACCTCTTGC
TACGTCTTGAAGAGCTCGAAGGGAGGCGCTTGCACAGCGTCGATGGGCCG
GGAACAAAGGAGAAAACCTAG
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