mRNA_A-nodosum_M_contig840.11.16 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig840.11.16 vs. uniprot
Match: D7FKD5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKD5_ECTSI) HSP 1 Score: 601 bits (1549), Expect = 1.250e-194 Identity = 398/995 (40.00%), Postives = 539/995 (54.17%), Query Frame = 3
Query: 63 QGTRVDCLFDDDYFRGTVDATDVDGEKRDLFRVCFDDGDVRDDVPEEDMKLPLEPGIRVQCLFGDDEVYFDGAIGQDNGDATYLVKFDDGDVLVAAPRRDIQIASPPTHHKSAKGDADQAKDVHGYTGNLEDACYEREGHMEEGQDGDAVGSVGSTAEDANSQEYWAHERGDMEYSEAKTGPVD-SHLKQTVPDRQHQDAGN-----------ALNSERNTSCAH-DCSGGEGHGVSDGERGTYSNREDRGDKAERTAGDDNSEGAPHFCSGRQERFIQ--ERSPAFIPAAQNPVHAYIEALAAATPRLMEDAPPDFRLWAVSYQMVALEDQLREQEAKGETWNDSILFVEGVLGGSN-TLSGRKFHSRRYDNGSCGYDGGR--TRGTTLKAGAVAPSFPTNLELRKMVENLSTLRIRQMALVRLCYGDSSLDMVQALCDLAEGYAKEGLWPQVSNHMTKVADILARLHGPEKIDDGGAFGTREGG---------WRNLESTCGDTFLHNLQAEERSSKLLFPTTDRYTNPALCSSLRSAGCARLIMRVFELVRTASATSDD-GQVVRVNLEALLLAHPDESLRSTGPDIFGN-DLPTACGWGVVVDVLRERSRLFVDLNLKVLEGVMPKHAGAVRIAFRRVDPEGLGIANAQEFLSELLEASHVSGFFSDADVYGLQSALKERIEADSVPTNINRESPPITWEEVLALIVLAEDPHTNVGNRQTRENRGRHSLLGIRVRLLTGRSQAHTNSLPAAYSNLSTALFELKRWAHREEIGHASLAKPFSTSCVLCVSFIRHSQKSKIKAKKLAEGWVQGDEGQDVFREECRRLLEECQRRTEVIFREEVEVKTWQTLVAYRAQTIAQELEGQGRDLEFAEKHLLRAWEILESRHGRYHTDVGAACISLGNLAIARNRQNEAENWFRRVLENFERCFLEERTPVNASIEATLGKLMVGRGHQIERGGERSPDKRASRRKLLLEVTRLLEKAATFYSERV 2960
+GTRVDCLF D+YFRG VD TD G +RV FDDGD+R+D P ED++LPLE G RV+C+F ++ YFDG I DNGDATY V FDDGDVL AAPR DI++ S +H +SA A A+D + E ++ + ++ G+ + +D NS+ A + + PV+ +H P R + G+ A S+ +S H S GE + D +++ RE RG S R E + + S ++P + NP+HA++EALAAA PRL+ +APPDFRL A+S+++ LE+QLR+QEA+GE W+ + E L ++ +L GR R D GG R TT + GA APSFP + ELR++ E+LSTLR++Q+ALVRLCYGD+SL+MVQA+ DLA+GYAKE LWPQVSNHM + ADILAR G +G GG ++ GD +R+ L FPT +RY++PALC SL A ARL++ + + +R + + GQV R N EA L H D++LRS + +P+ CGWG + LR S LF DLNLK++EGV K A VR+AF+ VDP+G G A + E+LAL+V ++ T V R + SLL +RV+ LTGR + HTN L AA NLS AL EL+R E G + + + L ++ RH + S IKAKKLAE W+QG EGQD++++EC+RL+ EC+RR EV+ R E+E +TWQ LVAYR++ + +EL G+G++L+ AE +L+R WEILESRHGR DVGAAC+SLG+LA+ R R NEA +WFRR L FE L E T L+EKAATFYSERV
Sbjct: 11 KGTRVDCLFGDEYFRGKVDDTDGSGSS---YRVIFDDGDIREDAPPEDLELPLEQGCRVECMFEGEDGYFDGVISIDNGDATYKVDFDDGDVLDAAPRHDIRVLSW-SHEESAPSKAVTAEDNNTNVAEQEGTGFDTRYSDRSHNEAESEGNREAQKDDENSKVISA--------AHGELPPVEETHDSPRQPQRFSEVDGSEDGYGRAGDEPAGTSQHGSSPRHLGSSSGEPQRIHD----SWTGRELRG-----------------TLSNRNEPTTELVQASSLYVPTSPNPLHAHLEALAAAAPRLLAEAPPDFRLSAISHRIAVLEEQLRQQEARGEAWHLPVFSAETPLHPADPSLRGRLERQGRSDPEQATGSGGEGSPRATTARGGAAAPSFPAHAELRQVAEDLSTLRMKQIALVRLCYGDASLEMVQAIADLADGYAKEDLWPQVSNHMARAADILARDKGSRVPGNGFFITATPGGGTYVDPRLRFKGHSGLRGDEPRGGYPEGQRARGLAFPTENRYSDPALCRSLTQARSARLLLELLKGLRLSVVEGGERGQVERENFEAFLSTHKDKALRSARHRLLLEAQMPSNCGWGAALGCLRRNSPLFADLNLKIMEGVQQKQAAKVRLAFQAVDPDGTGCAES----------------------------------------------------EILALMVADDEEETAVEGRVGVAWQRLRSLLHVRVQTLTGRCETHTNRLAAASRNLSEALAELERLGLGEASGSVPVLNALTDA--LALTHRRHQEMSSIKAKKLAETWIQGKEGQDLWKQECKRLVLECRRRLEVVPRAEIEERTWQALVAYRSKILTRELGGKGKELDTAEDYLVRVWEILESRHGRNDPDVGAACVSLGSLAVIRRRLNEAIDWFRRALGTFE---------------------------------------------ALEEATGLMEKAATFYSERV 873
BLAST of mRNA_A-nodosum_M_contig840.11.16 vs. uniprot
Match: A0A6H5JCV6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCV6_9PHAE) HSP 1 Score: 298 bits (762), Expect = 1.040e-82 Identity = 261/789 (33.08%), Postives = 346/789 (43.85%), Query Frame = 3
Query: 63 QGTRVDCLFDDDYFRGTVDATDVDGEKRDLFRVCFDDGDVRDDVPEEDMKLPLEPGIRVQCLFGDDEVYFDGAIGQDNGDATYLVKFDDGDVLVAAPRRDIQIASPPTHHKSAKGDADQAKD----VHGYTGNLEDACYEREGHMEEGQDGDAVGSVGSTAEDANSQEYWA---------------------HERGDMEYSEAKTGPVDSHLKQTVPDR------------------QHQDAGNALNSERNTSCAHD-CSGGEGHGVSDGERGTYSNREDRGDKAERTAGDDNSEGAPH----FCSGRQ------------ERFIQERSPAFIPAAQNPVHAYIEALAAATPRLMEDAPPDFRLWAVSYQMVALEDQLREQ------------EAKGETWNDSILFVEGVLGGSN-TLSGRKFHSRRY--------DNGSCGYDGGRTRGTTLKAGAVAPSFPTNLELRKMVENLSTLRIRQ----------------------------------MALVRLCYGDSSLDMVQALCDLAEGYAKEGLWPQ-----------------------------------------------------------------VSNHMTKVADILARLHGPEKIDDGGAFGTREGGWRNLESTC---------GDTFLHNLQAEERSSKLLFPTTDR----YTNPALCSSLRSAGCARLIMRVFELVRTASATSDD-GQVVRVNLEALLLAHPDESLRSTGPDIFGN-DLPTACGWGVVVDVLRERSRLFVDLNLKV 1844
+GTRVDCLF D+YFRG VD TD G +RV FDDGD+R+D P ED+++PLE G RV+C+F ++ YFDG I DNGDATY V FDDGDVL AAPR DI++ S P H +S +A A+D V G D Y H E ++ G+ + D NS+ A E G E +TG + Q + D G A + R+ HD CS V + T S ED G +S G P C+GR +Q S ++P + NP+HA++EALAAA P L+ +APPDFRL A S+++ ALE+QLR+Q EA+GE W+ + + L ++ +L GR R GS G G +R T + GA APSFP + ELR++VE+LSTLR++Q +ALVRLCYGD+SL+MVQA+ DLA+GYAKE LWPQ VSNHM + ADILAR G G GG ++ GD +R+ L FPT +R Y++PALC S+ A ARL++ + + +R + + GQV R E L H D++LRS P + +P CGWG + LR S F DLNLKV
Sbjct: 11 KGTRVDCLFGDEYFRGKVDDTDGGGSS---YRVIFDDGDIREDAPPEDLEIPLEQGCRVECMFEGEDGYFDGVISTDNGDATYKVDFDDGDVLDAAPRHDIRVLSWP-HEESVPTNAVTAEDNYTNVTEQEGKALDTGYSNRSHNE----AESEGNREAQKNDDNSKGISAAHGELPPREETHDPPHRPQRFSEVGGSEDGYGRTGDEPAGTSQHXXXXXXXXXXXXXXXXXXXXSVNYGDNGIAQET-RDCDFGHDICSR-----VKETRSSTRSGEEDPG----------SSSGEPQRNHDSCTGRNLWGTPSNRDEPTAELVQAPS-LYVPTSPNPLHAHLEALAAAAPHLLAEAPPDFRLSATSHRIAALEEQLRQQVGGVLWPCGKGGEARGEAWHLPVFSAKTPLHPADPSLCGRPERQGRSIPEQVSAEATGSGGE--GSSRATKARGGAAAPSFPAHTELRQVVEDLSTLRMKQARSAQLAPVKLMAARETVAAAIMMSRSVFSYIAQIALVRLCYGDASLEMVQAIADLADGYAKEDLWPQASNSVVVGLSTLHRERSRSTRVHPSWVVRRAKRQGEDSVMPLFQVGDEEPTEVLAAVPSVDELLQVSNHMARAADILARDKGSRFPGTGFFIAATPGGGTYVDPRLRFEEHSGLRGDEPRGGCTEGQRARGLAFPTENRCCARYSDPALCRSITPARAARLLLELLKGLRLSVVEGGERGQVEREKFEVFLSTHEDKALRSARPRLLLEAQMPGNCGWGAALGCLRRNSPFFNDLNLKV 772
BLAST of mRNA_A-nodosum_M_contig840.11.16 vs. uniprot
Match: A0A6H5J7A2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7A2_9PHAE) HSP 1 Score: 115 bits (289), Expect = 1.370e-26 Identity = 56/95 (58.95%), Postives = 73/95 (76.84%), Query Frame = 3
Query: 2508 EVEVKTWQTLVAYRAQTIAQELEGQGRDLEFAEKHLLRAWEILESRHGRYHTDVGAACISLGNLAIARNRQNEAENWFRRVLENFERCFLEERTP 2792
++E +TWQ LVAYR++ + +EL G+G++L+ AE +L+RAWEILESR GR DVGAACISLGNLA+ R R NEA +WFRR LE FE L ++P
Sbjct: 20 QIEERTWQALVAYRSKVLTRELGGKGKELDTAEDYLVRAWEILESRQGRNDPDVGAACISLGNLAVIRRRLNEAIDWFRRALETFEVKRLRPQSP 114
BLAST of mRNA_A-nodosum_M_contig840.11.16 vs. uniprot
Match: A0A835Z0D6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0D6_9STRA) HSP 1 Score: 108 bits (271), Expect = 2.270e-24 Identity = 54/100 (54.00%), Postives = 68/100 (68.00%), Query Frame = 3
Query: 72 RVDCLFDD-DYFRGTVDATDVDGEKRDLFRVCFDDGDVRDDVPEEDMKLPLEPGIRVQCLFGDDEVYFDGAIGQDNGDATYLVKFDDGDVLVAAPRRDIQ 368
RVDCLFDD +Y+RG+V A + DG +R+ FDDGD+R D P D+ PL PG RV C F + YF G IG DNGD TY +++DDGD L +A RRDI+
Sbjct: 10 RVDCLFDDGEYYRGSVAAANADG----TYRIVFDDGDIRHDAPLSDLLSPLLPGTRVSCYFPSEADYFPGVIGADNGDGTYHIRYDDGDELESASRRDIR 105
BLAST of mRNA_A-nodosum_M_contig840.11.16 vs. uniprot
Match: A0A482RRR4_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RRR4_9ARCH) HSP 1 Score: 89.4 bits (220), Expect = 2.270e-14 Identity = 115/549 (20.95%), Postives = 225/549 (40.98%), Query Frame = 3
Query: 1233 VENLSTLRIRQMALVRLCYGDSSLDMVQALCDLAEGYAKEGLWPQVSNHMTKVADILARLHGPEKIDDGGAFGTREGGW-------------RNLESTCGD---TFLHNLQAEERSSKLLFPTTDRYTNPALCSSLRSAGCARLIMRVFELVRTASATSDDGQVVRVNLEALLLAHPDESLRSTGPDIFGNDLPTACGWGVVVDVLRERS---RLFVDLNLKVLEGVMPKHAGAVRIAFRRVDPEGLGIANAQEFLSELLEASHVSGFFSDADVYGLQSALKERI------EADSVPT----NINRESP----PITWEEVLALIVLAEDPHTNVGNRQTRENRGRHSLLGIRVRLLTGRSQAHTNSLPAAYSNLSTALFELKRWAHREEIGHASLAKPFSTSCVLCVSFIRHSQKSKIKAKKLAEGWV-QGDEGQDVFREECRRLLEECQRRTEVIFREEVEVKTWQTLVAYRAQTI--AQELEGQGRDLEFAEKHLLRAWEILESRHGRYHTDVGAACISLGNLAIARNRQNEAENWFRRVLENFERC 2771
+E L R R +A+V+LCYG SS+ MV+A DLA YA +G W Q H+ + L ++ K + +++ + CG +F+ L + T D + P ++F+ + T +T ++ L+ L ++ E +RS+ N+ WG +V+ R + + +VD +L +P+ + + FR DP+ +A+ + + + S+ ++ L +A + + SV T N+ ++ P+T+EE + + ++A + + G + +L +V + G H L A L AL EL+ E+ L + + +K+++ A+ AE WV + ++G+ R R + + ++ +I E+E+ + + R + + + E E LE A ++L++++EI+E HG H VG AC+++ ++ +W R + FE+C
Sbjct: 1 MERLVEGRARVIAMVKLCYGQSSVVMVRAYIDLANAYALQGQWQQAEEHIMTALEKLVQIEAVSKQSANTQHSRKLALSAARRICVVFSCLRKHVVNNCGQIKASFVKELLHDMGDIMASTDTVDTHALPHPS-------------KLFQSLSTFFSTPSS----KLPLKQLTQSYFAE-VRSSN----SNNKTEIKTWGEIVEFFRTKCDVMKQYVDCAYTLL---LPQTKALLTLPFRLCDPQTRNLAHPVQLANAIQHFPSTLKAISNVKLHKLLAACRVEVPLLVNAHTGSVQTLPQPNVPQQGVFYELPMTFEEYICIYIVACSENID----------GMYGMLRAQVLTIKGVCSLHLQRLEVAEDVLLKALQELENVGLEGELMACELYNSIAQLMITKHHQWLDGKKTRLHAE--AETWVIEEEQGRKTVRMMLRAIKSQYDYKSNIISVAEMELMARKQAIQKRTRDLFDSDESESTKPSLEAAYRYLVKSFEIVEGVHG-VHAIVGTACVAVASVQNLLRDYENTRDWLLRAIRVFEKC 511 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig840.11.16 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig840.11.16 >prot_A-nodosum_M_contig840.11.16 ID=prot_A-nodosum_M_contig840.11.16|Name=mRNA_A-nodosum_M_contig840.11.16|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=1240bp MVDTITNATCIMSRSSFVQGTRVDCLFDDDYFRGTVDATDVDGEKRDLFRback to top mRNA from alignment at A-nodosum_M_contig840:147734..165495+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig840.11.16 ID=mRNA_A-nodosum_M_contig840.11.16|Name=mRNA_A-nodosum_M_contig840.11.16|organism=Ascophyllum nodosum dioecious|type=mRNA|length=17762bp|location=Sequence derived from alignment at A-nodosum_M_contig840:147734..165495+ (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig840:147734..165495+ >mRNA_A-nodosum_M_contig840.11.16 ID=mRNA_A-nodosum_M_contig840.11.16|Name=mRNA_A-nodosum_M_contig840.11.16|organism=Ascophyllum nodosum dioecious|type=CDS|length=3720bp|location=Sequence derived from alignment at A-nodosum_M_contig840:147734..165495+ (Ascophyllum nodosum dioecious)back to top |