mRNA_A-nodosum_M_contig84.48.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig84.48.1
Unique NamemRNA_A-nodosum_M_contig84.48.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig84.48.1 vs. uniprot
Match: A0A6H5JYQ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYQ2_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 1.850e-25
Identity = 49/65 (75.38%), Postives = 55/65 (84.62%), Query Frame = 1 
Query:    1 VKHYAPSSEVQDKEKASGILFTIFKATLREYGISIADLAGGTTDSGPDVKAMCVNFLLALHDVCW 195
            VKHYAPS+E+Q  EKAS ILFTIF+ATL EYGI ++DLAGGTTDSG DVKAMCVN LL LH + W
Sbjct:  258 VKHYAPSTEIQGTEKASEILFTIFRATLAEYGIKLSDLAGGTTDSGSDVKAMCVNILLGLHKIWW 322
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BLAST of mRNA_A-nodosum_M_contig84.48.1 vs. uniprot
Match: A0A6H5KZ46_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ46_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 6.940e-24
Identity = 45/65 (69.23%), Postives = 55/65 (84.62%), Query Frame = 1 
Query:    1 VKHYAPSSEVQDKEKASGILFTIFKATLREYGISIADLAGGTTDSGPDVKAMCVNFLLALHDVCW 195
            VKHYAPS+ VQ  EKASG+LFT+F++ L E+GI ++DLAGGTTDSG D+KAMC NFLLA H+V W
Sbjct:   82 VKHYAPSAAVQASEKASGVLFTVFRSLLAEFGIKLSDLAGGTTDSGSDIKAMCTNFLLAQHNVYW 146
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BLAST of mRNA_A-nodosum_M_contig84.48.1 vs. uniprot
Match: A0A6H5JN28_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN28_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 1.250e-23
Identity = 46/63 (73.02%), Postives = 53/63 (84.13%), Query Frame = 1 
Query:    1 VKHYAPSSEVQDKEKASGILFTIFKATLREYGISIADLAGGTTDSGPDVKAMCVNFLLALHDV 189
            VKHYAPS+ VQ  +KAS ILF +FK+ LRE+G+ I+DLAGGTTDSG DVKAMCVNFLLA H V
Sbjct:   50 VKHYAPSAAVQVTDKASEILFIVFKSVLREFGVKISDLAGGTTDSGSDVKAMCVNFLLAQHKV 112
[Close]
BLAST of mRNA_A-nodosum_M_contig84.48.1 vs. uniprot
Match: A0A6H5L1G0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1G0_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 1.430e-21
Identity = 45/65 (69.23%), Postives = 51/65 (78.46%), Query Frame = 1 
Query:    1 VKHYAPSSEVQDKEKASGILFTIFKATLREYGISIADLAGGTTDSGPDVKAMCVNFLLALHDVCW 195
            VKHYAPS+ VQ   KAS ILF +F + LRE+G+ I+DLAGGTTDSG DVKAMCVNFLLA H   W
Sbjct:  277 VKHYAPSAAVQATGKASEILFNVFNSVLREFGVKISDLAGGTTDSGSDVKAMCVNFLLAQHKGSW 341
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig84.48.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JYQ2_9PHAE1.850e-2575.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZ46_9PHAE6.940e-2469.23Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JN28_9PHAE1.250e-2373.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L1G0_9PHAE1.430e-2169.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig84contigA-nodosum_M_contig84:169516..169711 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size196
Hectar predicted targeting categoryother localisation
Exons1
Cds size195
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870195.9964688-CDS-A-nodosum_M_contig84:169515..1697101680870195.9964688-CDS-A-nodosum_M_contig84:169515..169710Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig84 169516..169710 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig84.48.1prot_A-nodosum_M_contig84.48.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig84 169516..169710 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig84.48.1

>prot_A-nodosum_M_contig84.48.1 ID=prot_A-nodosum_M_contig84.48.1|Name=mRNA_A-nodosum_M_contig84.48.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=65bp
VKHYAPSSEVQDKEKASGILFTIFKATLREYGISIADLAGGTTDSGPDVK
AMCVNFLLALHDVCW
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mRNA from alignment at A-nodosum_M_contig84:169516..169711+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig84.48.1 ID=mRNA_A-nodosum_M_contig84.48.1|Name=mRNA_A-nodosum_M_contig84.48.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=196bp|location=Sequence derived from alignment at A-nodosum_M_contig84:169516..169711+ (Ascophyllum nodosum dioecious)
GTCAAGCACTACGCCCCTTCGTCCGAAGTTCAGGACAAGGAGAAGGCAAG
CGGCATCCTCTTCACGATTTTCAAGGCCACCCTTCGCGAGTACGGCATCA
GCATCGCCGACCTCGCCGGTGGAACAACGGACAGCGGACCCGACGTGAAG
GCGATGTGCGTCAACTTTCTCCTCGCCCTCCACGACGTCTGTTGGG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig84:169516..169711+

>mRNA_A-nodosum_M_contig84.48.1 ID=mRNA_A-nodosum_M_contig84.48.1|Name=mRNA_A-nodosum_M_contig84.48.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=195bp|location=Sequence derived from alignment at A-nodosum_M_contig84:169516..169711+ (Ascophyllum nodosum dioecious)
GTCAAGCACTACGCCCCTTCGTCCGAAGTTCAGGACAAGGAGAAGGCAAG
CGGCATCCTCTTCACGATTTTCAAGGCCACCCTTCGCGAGTACGGCATCA
GCATCGCCGACCTCGCCGGTGGAACAACGGACAGCGGACCCGACGTGAAG
GCGATGTGCGTCAACTTTCTCCTCGCCCTCCACGACGTCTGTTGG
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