mRNA_A-nodosum_M_contig84.25.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig84.25.1
Unique NamemRNA_A-nodosum_M_contig84.25.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig84.25.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig84contigA-nodosum_M_contig84:32911..36368 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size555
Hectar predicted targeting categoryother localisation
Exons2
Cds size396
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870194.9874647-CDS-A-nodosum_M_contig84:32910..333061680870194.9874647-CDS-A-nodosum_M_contig84:32910..33306Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig84 32911..33306 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870194.9989665-UTR-A-nodosum_M_contig84:33306..334151680870194.9989665-UTR-A-nodosum_M_contig84:33306..33415Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig84 33307..33415 +
1680870195.0133386-UTR-A-nodosum_M_contig84:36320..363681680870195.0133386-UTR-A-nodosum_M_contig84:36320..36368Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig84 36321..36368 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig84.25.1prot_A-nodosum_M_contig84.25.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig84 32911..33306 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig84.25.1

>prot_A-nodosum_M_contig84.25.1 ID=prot_A-nodosum_M_contig84.25.1|Name=mRNA_A-nodosum_M_contig84.25.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=132bp
KVLRRGEEDDQPGRYLQHNPEKTNNSVHLKVEWTNQWRVVQGSEKQVGEL
YLDKKGLSNMYQSNRRTYVRTKSSGVFKAVRKHSQVVTKKKSLPGGDSWN
RWHPPRRGLLRQPLRAPSHRGNDRKSCPGRI*
back to top

mRNA from alignment at A-nodosum_M_contig84:32911..36368+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig84.25.1 ID=mRNA_A-nodosum_M_contig84.25.1|Name=mRNA_A-nodosum_M_contig84.25.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3458bp|location=Sequence derived from alignment at A-nodosum_M_contig84:32911..36368+ (Ascophyllum nodosum dioecious)
AAAGTTTTAAGGAGGGGAGAAGAAGACGACCAGCCAGGAAGATATCTTCA
ACATAATCCAGAAAAGACCAACAACAGTGTTCACCTGAAAGTTGAGTGGA
CGAATCAATGGAGGGTCGTACAAGGAAGTGAGAAGCAGGTAGGCGAGTTA
TACCTCGACAAAAAGGGACTGTCAAATATGTACCAATCAAATCGTAGAAC
ATATGTCCGTACGAAATCAAGTGGCGTGTTTAAAGCAGTAAGGAAACACT
CACAAGTAGTCACAAAAAAAAAGTCCCTCCCTGGGGGAGATAGTTGGAAT
CGATGGCATCCCCCTCGAAGAGGTCTTTTGAGGCAGCCTCTGAGAGCTCC
GAGCCACCGAGGAAACGACAGAAAGTCTTGTCCAGGGAGGATATAATCAA
GCGGGACCGCGAGATCGCGCTCAAGACTTTTTTTCTCGGTTTGAAGGGGT
ACGGGTCCACGGTACCCGGCGAGAAGGGTGGGCTTTCCACCTCCAATGAG
CAAATGTGAGTGAGGGCAGATCTTGGACGTACGTACCCAGTTGGTACCCA
ACCACACGAATGAGTATACTGACGCGGGACGGGACGGCCGAACCTATCCT
GCGAGACCAAATTCTCAGGCACGAAGAGGGAAATCAAAACTGTGTGGTGT
TAGCGAGGATTGGCCTGAGTGTGGAGAATAAGCATGCTGACGCGGGACGG
GACGGCCGAACCTATTGGCATGTCGTGGATGTGTGATACAGGCACTATCA
GAGGTGGCTCGTGGGTTGGTTTCCGCACATTGCGATTTGTTTTAGCGTAC
ATCATCACGAACGAGCAAACAAAATTTGCAAAATTCCATCTTGGGTGTGA
AATATGAACGCATCTAAACCTTCCTTCTGAGCATCCCTCAAACATGGTAA
CAAAACCTTTTGATGACATTAATTATTCTGCCGCAGAGTGTTCAAGAAAA
ATGTTTGTGCCTGTTCTCAACACTAACCGATCGGGCCTCAACCATACTCA
GAAATTTACGCGGTTGCCAATACAGTACCGGCCCACTCACAAGAAACACC
TTTGTAAGAAATTAAGCCTTAGATAAAAAAAAAAAAAAAATGAGCCGTAA
GAAATTGCGCTCAAAAGAAGAAGAACGATAAGAAACGGAGTATTTTCATA
GCAAGAAATTGATCAATATCGTGCTTCCGGTGATAAGAAAGAAACATTAA
ACAAGATATAATATGGGGTTGGACGTAGGAAGAAGAAAAGAAATGGCCTC
CTCTCTGTACGGACGGTACACACGTACCTGTACAGCTGACTGATTCTACA
CCTACCCGTTCCTTGATAAAGCGTTATGTGGTCTTGCGTCGTGGTTTGGG
GTGGTTCCTGGGACAGATGAGCCGGACGGCGGCCCCTCAAACGAGCCATA
TTTACTATTTACGACTACCGAGTGGTTTTGGCATTCGATCAGAGTACGAT
CAGCGTCAAGTTGCCTCTTGCTGCATACAGCGTAGACGAGGAGAACGCAG
CCGTAGGAGCATGGGCGTTGCTTGAGGCAATCGAAGGTGGTAGCAACGAG
TTGGAGGAGGAATGTGGAGGTGATCAGGGACGCCGGACGAGTAGTAGAGC
GCGAACCCCTAATGTTCGCAACATCGATCATCAGCTGGGAGGAGGTAGTG
GTGTAAGATAGATGGACGGTAGAAACGCACAAGCAACAGGCGACCTCCTT
CGTCCGCGTTTTCGAATCATGATGCGGTATGGTAGCGTTAACGGGAGAGT
GGTAGTATACTGTAGTACCGTACCTGGTACTACGGAACAGGTGTCACACA
GACGTGGTGACACAGGTGCGGTAGTACTGCGTTCATATTTTTCTTTAAAT
AATATTGAAACGTTCCTTGTGTTCTAGACTACACAAGTCTTTATTGTTAT
AAGGGTCGATAGTTAAAGGCCCTATTATTGTATAGTGGTATTATTATTAA
AATTATGCACTGCAAATGTTTTTGTTTTGTTTTTGTCTCATATCCTACAT
GGCGATTAATAATGGAAGTGTACAGTATGATAATAACGGTGGGTTTCTGT
TCTCCCCGATATTATATCTAGACTATACTGTTGACCCAAGCGCCTATTTT
TGTATGGTTCGAGATGGCAATATTATATAATATTATTACTACCCTCCTAA
CTGTATACTATATACTACTACAGTGTCTTCTGTTTTGTTATGCTTGGTGG
CTCTGCATGGCGGTTAATATAAGTCAAAGTGTACAATATAACGGTGGGCT
TCTCCCCGACATTACACTGTTGACTCAAGGTTACTATCATTAATACCATC
GGGGAACCCGTTTAAATGCCATCAAGAAGTTTATGATCCCACCTAGACTA
AACGTTTTGACAGTTTTTTCCCCCTGACCTGACTGGGGGATACTCAAAAG
GTCTGGTCTAGATGCGTTCATATTTTTCTGTGAATAGAGTCTAGATAAAA
TAATCTGACAGCCCTAGCCTTTGTCACTAATTCCAGCCCAACATGCCAAA
TAATGCCAAATAACGCTAAATCACACGGTCGCGTATACTATACTATTATT
TATATTAGCAACTATTATATAAGTCTATCTATAGTAGACCGCGCCTCGAT
CAAAACCGTTTTTGCGGCGGGGATATGCGCCATCTTTATACAATGTCATC
TCCTTAAGGTATTTTATTTAATACAGTACCCTGGTACCGTATAACATAAA
TCAAATGCGAATAGTCTATTACGATTATGGCGGTTTCACGGTTCACGGCA
TCCAAAGGTACTGTTGTACTGTACTGTAGATTACATCACACTCTTCCGGC
ACAAAGAAAAGGCTGTGCAATGGTTGCACTTCCCTCCATGGCCTGCACCG
TAAAAAGTAATATAATACTGCACCCACCCCCGAAAAAAACACAAGAGAGA
ATACAAGTAAAGGCGCAAATACAAACACCAATTATGACACCGAAATTTTA
CAAACCTACCCCCCCCTTCCGCCTGCCTTTCCCTGAGAAAGTAGAAAACA
AAGCAGAAAACAAAGATGAACGTTCTTACGTTCGTTCAAATCCTTCCACC
GTTTGTTCAAAATCAAAAACGCTGATTGAGATCGATCCTCAAAAGATCCA
ACATGTTCCCTTTTTACGTCGGCTTCCCAACAAAACAGGGGTCCTGAACG
GAGTGCACGCACGCACGCAGAAGGCGTAATCTTTTTCTAAAAGGCGGTCT
GTTCTTGGGCATTACATGCTTAGCCTAGAGCTAGGCGCCTGCCTGCCTTT
CTTAAGGCGTTACTAGTACATTTTTTCCCGAATCGCATTTAAAGGCATCC
ATCCCCTTTCCTTTCTCAGGCGTTGCATATTTGTTTGTGTGTGTGTGTGT
GTGTGTGTATATGTGTTCCTCACTCTACCCATCTCCACTGCCGTGCCATT
GTGCCAGCAGGGATGGTAATGGTCACTTCCAACCTTCCGACCTCGATCCC
GCCAAGCC
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig84:32911..36368+

>mRNA_A-nodosum_M_contig84.25.1 ID=mRNA_A-nodosum_M_contig84.25.1|Name=mRNA_A-nodosum_M_contig84.25.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=396bp|location=Sequence derived from alignment at A-nodosum_M_contig84:32911..36368+ (Ascophyllum nodosum dioecious)
AAAGTTTTAAGGAGGGGAGAAGAAGACGACCAGCCAGGAAGATATCTTCA
ACATAATCCAGAAAAGACCAACAACAGTGTTCACCTGAAAGTTGAGTGGA
CGAATCAATGGAGGGTCGTACAAGGAAGTGAGAAGCAGGTAGGCGAGTTA
TACCTCGACAAAAAGGGACTGTCAAATATGTACCAATCAAATCGTAGAAC
ATATGTCCGTACGAAATCAAGTGGCGTGTTTAAAGCAGTAAGGAAACACT
CACAAGTAGTCACAAAAAAAAAGTCCCTCCCTGGGGGAGATAGTTGGAAT
CGATGGCATCCCCCTCGAAGAGGTCTTTTGAGGCAGCCTCTGAGAGCTCC
GAGCCACCGAGGAAACGACAGAAAGTCTTGTCCAGGGAGGATATAA
back to top