mRNA_A-nodosum_M_contig84.23.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig84.23.1
Unique NamemRNA_A-nodosum_M_contig84.23.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig84.23.1 vs. uniprot
Match: D8LQ86_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ86_ECTSI)

HSP 1 Score: 392 bits (1008), Expect = 6.110e-136
Identity = 193/239 (80.75%), Postives = 217/239 (90.79%), Query Frame = 1
Query:    1 MFQGQGESVVDICLKRKDRTYRPNDVLEGTLVVSTPEAWDCKAINLSYSGVYLSIGYHISVKIERGLIRKELS*KVEFILEVPGQAPTPPMGFPFEITHETLEYAPKRYGRLRRLRPFRVTGKLHEAAVSTSRPLTGEVVVETSECPLKSLEVQLVRVETVEQAEGQLREATEIQNLQIGDGDVCRGLAIPIYMVLSRLFSCPTMIAPRYRVEFELNIIVCFADSEGYTATQNFQILLL 717
            MFQG GE VVDI LKRKDRTYRP D+LEGTLVV+TPEAWDCK++N+SYSGVYLSIGYHIS KIERG++R +LS K+EF++EVPG+A +P    PFEIT ETLEYAPKRYGR RRLRPFRV+G+LH A VSTSRPLTGEVVVE SE P+KSLEVQLVRVETV QA+GQLREATEIQNLQIG+GDVCRGL IPIYMVL RLFSCPTM+ PR+RVEFELN+IVCFA++EGYTATQNFQILL+
Sbjct:    1 MFQGSGEIVVDIRLKRKDRTYRPTDILEGTLVVNTPEAWDCKSVNISYSGVYLSIGYHISAKIERGMMRNDLSKKIEFMVEVPGEAASPATEVPFEITPETLEYAPKRYGRQRRLRPFRVSGRLHSATVSTSRPLTGEVVVEESERPIKSLEVQLVRVETVSQAQGQLREATEIQNLQIGEGDVCRGLVIPIYMVLPRLFSCPTMVTPRFRVEFELNVIVCFAEAEGYTATQNFQILLV 239          
BLAST of mRNA_A-nodosum_M_contig84.23.1 vs. uniprot
Match: A0A6H5KT71_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT71_9PHAE)

HSP 1 Score: 360 bits (923), Expect = 4.740e-122
Identity = 190/302 (62.91%), Postives = 217/302 (71.85%), Query Frame = 1
Query:    1 MFQGQGESVVDICLKRKDRTYRPNDVLEGTLVVSTPEAWDCKAINLS---------------------------------------------------------------YSGVYLSIGYHISVKIERGLIRKELS*KVEFILEVPGQAPTPPMGFPFEITHETLEYAPKRYGRLRRLRPFRVTGKLHEAAVSTSRPLTGEVVVETSECPLKSLEVQLVRVETVEQAEGQLREATEIQNLQIGDGDVCRGLAIPIYMVLSRLFSCPTMIAPRYRVEFELNIIVCFADSEGYTATQNFQILLL 717
            MFQG GE +VDI LKRKDRTYRP D+LEGTLVV+TPEAWDCK++N+S                                                               YSGVYLSIGYHIS KIERG++R +LS K+EF++EVPG+A +P    PFEIT ETLEYAPKRYGR RRLRPFRV+G+L+ A VSTS+PLTGEVVVE SE P+KSLEVQLVRVETV QA+GQLREATEIQNLQIG+GDVCRGL IPIYMVL RLFSCPTM+ PR+RVEFELN+IVCFA++EGYTATQNFQILL+
Sbjct:    1 MFQGSGEIIVDIRLKRKDRTYRPTDILEGTLVVNTPEAWDCKSVNISMQGNVCLFDSAERRSLFSDGPKPLALLHETINIMGAGRFPEGQTEIPFEAEVRGIDGMPLLNSYSGVYLSIGYHISAKIERGMMRNDLSKKIEFMVEVPGEAASPATEVPFEITPETLEYAPKRYGRQRRLRPFRVSGRLYSATVSTSQPLTGEVVVEESERPIKSLEVQLVRVETVSQAQGQLREATEIQNLQIGEGDVCRGLVIPIYMVLPRLFSCPTMVTPRFRVEFELNVIVCFAEAEGYTATQNFQILLV 302          
BLAST of mRNA_A-nodosum_M_contig84.23.1 vs. uniprot
Match: A0A7S2FUK8_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FUK8_9STRA)

HSP 1 Score: 178 bits (452), Expect = 7.280e-52
Identity = 97/199 (48.74%), Postives = 135/199 (67.84%), Query Frame = 1
Query:  124 KAINLSYSGVYLSIGYHISVKIERGLIRKELS*KVEFILEVPGQAPTPPMGFPFEITHETLEYAPKRYGRLRRLRPFRVTGKLHEAAVSTSRPLTGEVVVETSECPLKSLEVQLVRVETVEQAEG--QLREATEIQNLQIGDGDVCRGLAIPIYMVLSRLFSCPTMIAPRYRVEFELNIIVCFADSEGYTATQNFQILL 714
            + ++ SY GVY+++ Y I+V  ERG+++K L   +EFI+EVP  A        FEIT E+LE    R   L ++  F+++G+L       + P TGEV +E S+ P+KS+E+QLVRVETV+  +     REATEIQN+QIGDGDVCR L IP+YM+  RLF+CPTM+   ++VEFE+N+IV FAD  GY  T+NF I+L
Sbjct:   26 EGLHESYHGVYINVEYKINVDCERGVMKKALHRSIEFIVEVPENAKHETEPERFEITPESLENV--RSNTLDQIPKFKISGRLFHKLCPINLPFTGEVTIEASQAPVKSVELQLVRVETVKHPDSGNTAREATEIQNIQIGDGDVCRNLVIPLYMIFPRLFTCPTMLTELFKVEFEVNLIVVFAD--GYMVTENFPIVL 220          
BLAST of mRNA_A-nodosum_M_contig84.23.1 vs. uniprot
Match: A0A7S2MRC8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MRC8_9STRA)

HSP 1 Score: 177 bits (448), Expect = 3.050e-50
Identity = 94/197 (47.72%), Postives = 132/197 (67.01%), Query Frame = 1
Query:  124 KAINLSYSGVYLSIGYHISVKIERGLIRKELS*KVEFILEVPGQAPTPPMGFPFEITHETLEYAPKRYGRLRRLRPFRVTGKLHEAAVSTSRPLTGEVVVETSECPLKSLEVQLVRVETVEQAEGQLREATEIQNLQIGDGDVCRGLAIPIYMVLSRLFSCPTMIAPRYRVEFELNIIVCFADSEGYTATQNFQILL 714
            + ++ SY GVY+++ Y I+V  ERG  +K L   +EF++EVP  A +      FEIT E+LE        L ++  F+++G+L       + P TGEV +E S+ P+KS+E+QLVRVETV+Q    +REATEIQN+QIGDGDVCR L +P+YM+  RLF+CPTM+   ++VEFE+N+IV F D  GY  T+NF I L
Sbjct:  110 EGLHESYHGVYINVEYKINVSCERGFPKKALHRNIEFVVEVPEAAKSETEPERFEITPESLENV--NASSLSKIPIFKISGRLFHKLCPINLPFTGEVTIEASQAPVKSIELQLVRVETVKQMGKTVREATEIQNIQIGDGDVCRNLVMPLYMIFPRLFTCPTMLTDSFQVEFEVNLIVVFGD--GYMVTENFPIEL 302          
BLAST of mRNA_A-nodosum_M_contig84.23.1 vs. uniprot
Match: K3WEV9_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WEV9_GLOUD)

HSP 1 Score: 174 bits (442), Expect = 1.880e-49
Identity = 108/297 (36.36%), Postives = 155/297 (52.19%), Query Frame = 1
Query:   22 SVVDICLKRKDRTYRPNDVLEGTLVVSTPEAW------------------------------------------------------------------DCKAINLSYSGVYLSIGYHISVKIERGLIRKELS*KVEFILEVPGQAPTPPMGFPFEITHETLEYAPKRYGRLRRLRPFRVTGKLHEAAVSTSRPLTGEVVVETSECPLKSLEVQLVRVETVEQAEGQLREATEIQNLQIGDGDVCRGLAIPIYMVLSRLFSCPTMIAPRYRVEFELNIIVCFADSEGYTATQNFQILL 714
            S +DI L R DR +RP++V++G +++S+P+ +                                                                  D + +  +Y GVY+S+ Y I     RG+++  L   +EFI+EVP + P       F IT ETLE   ++   L  +  F +TG++H      + P TGE+VVE +  P+KS+E+QL+RVE+V  AEG  R+ATEIQN+QIG GDVCR LAIPIYM+  RLF+CPTM+A +++VEFE NI+V F D  G   T+NF I L
Sbjct:    3 STLDIKLNRIDRIFRPHEVVQGQVIISSPKGFAHQGIAMKVEGSARLQVSAKSAGLFDAFYSAVAPLQLVYLHIPIAPAGKVPFGVTKIPFEFELVGNDAQPLFETYHGVYVSVKYEIVCDCVRGIMKSNLHKTMEFIVEVPLREPLRDAPEEFSITPETLENVRRKS--LTTIPDFHITGRIHRTNCPVNLPFTGEIVVEHASSPIKSVELQLIRVESVAHAEGVARDATEIQNVQIGWGDVCRQLAIPIYMIFPRLFTCPTMLAAKFKVEFETNIVVLFED--GNMITENFPITL 295          
BLAST of mRNA_A-nodosum_M_contig84.23.1 vs. uniprot
Match: A0A8K1FJJ2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FJJ2_PYTOL)

HSP 1 Score: 174 bits (441), Expect = 2.570e-49
Identity = 104/297 (35.02%), Postives = 158/297 (53.20%), Query Frame = 1
Query:   22 SVVDICLKRKDRTYRPNDVLEGTLVVSTPEAWDCKAINL------------------------------------------------------------------SYSGVYLSIGYHISVKIERGLIRKELS*KVEFILEVPGQAPTPPMGFPFEITHETLEYAPKRYGRLRRLRPFRVTGKLHEAAVSTSRPLTGEVVVETSECPLKSLEVQLVRVETVEQAEGQLREATEIQNLQIGDGDVCRGLAIPIYMVLSRLFSCPTMIAPRYRVEFELNIIVCFADSEGYTATQNFQILL 714
            S +DI L R DR +RP+++L+G +++S+P+ +  + I++                                                                  +Y GVY+S+ Y I+    RGL++  L   +EFI+EVP Q P       F IT  +LE   +++  L  +  F+V+G++H      + P TGE+V+E +  P+KS+E+QL+RVE+V  +EG  R+ATEIQN+QIG GDVCR ++IPIYM+  RLF+CPTM+ PR++VEFE N++V F D  G   T+NF I L
Sbjct:    2 SSLDIKLNRVDRIFRPHELLQGQVLISSPKGFAHQGISMKVEGSARLQLSAKSTGLFESFYNTVTPMDLVYFHIPVAPAGKVPLGISKFPFEFELTGIDGQQLFETYHGVYVSVKYEITCSCVRGLMKSTLQKTLEFIVEVPLQEPLHDAPEEFNITPNSLENVRRKH--LSTVPTFQVSGRIHRTNCPVNLPFTGEIVIEHASAPIKSIELQLIRVESVAHSEGVARDATEIQNVQIGWGDVCREMSIPIYMIFPRLFTCPTMLTPRFKVEFETNVVVLFED--GNMITENFPITL 294          
BLAST of mRNA_A-nodosum_M_contig84.23.1 vs. uniprot
Match: W2RB33_PHYPN (Uncharacterized protein n=23 Tax=Peronosporaceae TaxID=4777 RepID=W2RB33_PHYPN)

HSP 1 Score: 170 bits (431), Expect = 8.210e-48
Identity = 90/192 (46.88%), Postives = 128/192 (66.67%), Query Frame = 1
Query:  139 SYSGVYLSIGYHISVKIERGLIRKELS*KVEFILEVPGQAPTPPMGFPFEITHETLEYAPKRYGRLRRLRPFRVTGKLHEAAVSTSRPLTGEVVVETSECPLKSLEVQLVRVETVEQAEGQLREATEIQNLQIGDGDVCRGLAIPIYMVLSRLFSCPTMIAPRYRVEFELNIIVCFADSEGYTATQNFQILL 714
            +Y GVY+S+ Y I     RG+++ +L   +EF++EVP + P P     F IT E+LE    R   L  +  F +TGK+H      + P TGE+++E ++ P+KS+E+QL+RVE+V  AEG  R+ATEIQN+QIG GDVCR +AIPIYM+  RLF+CPTM+ P ++VEFE N++V F +  G   T+NF I L
Sbjct:  108 TYHGVYVSVKYEIICDCIRGIMKNKLHKTLEFVVEVPLREPLPDSPEEFHITPESLENV--RPQSLSAMPYFHITGKVHRTNCPVNLPFTGEIIIEEAKSPIKSVELQLIRVESVAHAEGIARDATEIQNVQIGWGDVCRQMAIPIYMIFPRLFTCPTMLTPAFKVEFETNVVVLFEN--GNMITENFPITL 295          
BLAST of mRNA_A-nodosum_M_contig84.23.1 vs. uniprot
Match: A0A485L3M2_9STRA (Aste57867_15679 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L3M2_9STRA)

HSP 1 Score: 170 bits (431), Expect = 8.210e-48
Identity = 90/192 (46.88%), Postives = 127/192 (66.15%), Query Frame = 1
Query:  139 SYSGVYLSIGYHISVKIERGLIRKELS*KVEFILEVPGQAPTPPMGFPFEITHETLEYAPKRYGRLRRLRPFRVTGKLHEAAVSTSRPLTGEVVVETSECPLKSLEVQLVRVETVEQAEGQLREATEIQNLQIGDGDVCRGLAIPIYMVLSRLFSCPTMIAPRYRVEFELNIIVCFADSEGYTATQNFQILL 714
            +Y GVY+S+ Y I     RG+++K L   +EFI+EVP Q   P     F IT E LE    R    R L  F +TG++H      + P TGE++VE++  PLKS+E+QL+RVE+V  +EG  R+ATEIQN+Q+G GDVCR ++IP+YM+  RLF+CPTM+   ++V+FE+N++V F D  GY  T+NF I L
Sbjct:  108 TYHGVYVSVKYEIICDCPRGIMKKTLHRTLEFIVEVPLQNALPDAPEDFVITPEKLENV--RVSTTRTLPTFHITGRIHRTNCPVNLPFTGELIVESASAPLKSIELQLIRVESVTHSEGIARDATEIQNVQVGWGDVCRHVSIPLYMIFPRLFTCPTMLTAGFKVQFEVNVVVLFED--GYMITENFPIHL 295          
BLAST of mRNA_A-nodosum_M_contig84.23.1 vs. uniprot
Match: A0A0W8CRJ7_PHYNI (Down syndrome critical region protein 3 n=7 Tax=Phytophthora TaxID=4783 RepID=A0A0W8CRJ7_PHYNI)

HSP 1 Score: 169 bits (429), Expect = 1.630e-47
Identity = 90/192 (46.88%), Postives = 127/192 (66.15%), Query Frame = 1
Query:  139 SYSGVYLSIGYHISVKIERGLIRKELS*KVEFILEVPGQAPTPPMGFPFEITHETLEYAPKRYGRLRRLRPFRVTGKLHEAAVSTSRPLTGEVVVETSECPLKSLEVQLVRVETVEQAEGQLREATEIQNLQIGDGDVCRGLAIPIYMVLSRLFSCPTMIAPRYRVEFELNIIVCFADSEGYTATQNFQILL 714
            +Y GVY+S+ Y I     RG+++ +L   +EF++EVP   P P     F IT E+LE    R   L  +  F +TGK+H      + P TGE+++E ++ P+KS+E+QL+RVE+V  AEG  R+ATEIQN+QIG GDVCR +AIPIYM+  RLF+CPTM+ P ++VEFE N++V F +  G   T+NF I L
Sbjct:  108 TYHGVYVSVKYEIICDCIRGIMKNKLHKTLEFVVEVPLXEPLPDSPEEFHITPESLENV--RPQSLSAMPYFHITGKVHRTNCPVNLPFTGEIIIEEAKSPIKSVELQLIRVESVAHAEGIARDATEIQNVQIGWGDVCRQMAIPIYMIFPRLFTCPTMLTPAFKVEFETNVVVLFEN--GNMITENFPITL 295          
BLAST of mRNA_A-nodosum_M_contig84.23.1 vs. uniprot
Match: A0A1V9Z652_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z652_9STRA)

HSP 1 Score: 169 bits (429), Expect = 1.630e-47
Identity = 91/192 (47.40%), Postives = 128/192 (66.67%), Query Frame = 1
Query:  139 SYSGVYLSIGYHISVKIERGLIRKELS*KVEFILEVPGQAPTPPMGFPFEITHETLEYAPKRYGRLRRLRPFRVTGKLHEAAVSTSRPLTGEVVVETSECPLKSLEVQLVRVETVEQAEGQLREATEIQNLQIGDGDVCRGLAIPIYMVLSRLFSCPTMIAPRYRVEFELNIIVCFADSEGYTATQNFQILL 714
            +Y GVY+S+ Y I V   RG+++K L   +EFI+EVP +   P     F IT + +E    R   +R +  FR+TG++H      + P TGEV VE++  PLKS+E+QL+RVE+V   EG  R+ATEIQN+QIG G+VC  +AIPIYMV  RLF+CP+M+ P ++V+FE+N++V F D  GY  T+NF I L
Sbjct:  108 TYHGVYVSVKYEIIVDCVRGIMKKNLHRTLEFIVEVPLRDALPDAPEDFVITPDKIENL--RTSSMRNVPMFRITGRVHRTNCPVNMPFTGEVTVESASAPLKSIELQLIRVESVVHTEGIARDATEIQNVQIGWGNVCHQVAIPIYMVFPRLFTCPSMLTPGFKVQFEVNVVVLFED--GYMITENFPIHL 295          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig84.23.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQ86_ECTSI6.110e-13680.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KT71_9PHAE4.740e-12262.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2FUK8_9STRA7.280e-5248.74Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2MRC8_9STRA3.050e-5047.72Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
K3WEV9_GLOUD1.880e-4936.36Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A8K1FJJ2_PYTOL2.570e-4935.02Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
W2RB33_PHYPN8.210e-4846.88Uncharacterized protein n=23 Tax=Peronosporaceae T... [more]
A0A485L3M2_9STRA8.210e-4846.88Aste57867_15679 protein n=1 Tax=Aphanomyces stella... [more]
A0A0W8CRJ7_PHYNI1.630e-4746.88Down syndrome critical region protein 3 n=7 Tax=Ph... [more]
A0A1V9Z652_9STRA1.630e-4747.40Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig84contigA-nodosum_M_contig84:25922..31182 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LQ86
Preferred nameDSCR3
PFAMsVps26
Model size862
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008565,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0016197,GO:0016482,GO:0030904,GO:0030906,GO:0031410,GO:0031982,GO:0032991,GO:0033036,GO:0034613,GO:0042147,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0044424,GO:0044425,GO:0044444,GO:0044464,GO:0045184,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0097708,GO:0098796
Exons7
Evalue6.69e-83
EggNOG OGsKOG2717@1|root,KOG2717@2759|Eukaryota
Descriptionprotein transporter activity
Cds size453
COG categoryDT
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig84.23.1prot_A-nodosum_M_contig84.23.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig84 26061..27438 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870195.2904794-UTR-A-nodosum_M_contig84:25921..260601680870195.2904794-UTR-A-nodosum_M_contig84:25921..26060Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig84 25922..26060 -
1680870195.3484106-UTR-A-nodosum_M_contig84:27438..274701680870195.3484106-UTR-A-nodosum_M_contig84:27438..27470Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig84 27439..27470 -
1680870195.3623195-UTR-A-nodosum_M_contig84:28205..282771680870195.3623195-UTR-A-nodosum_M_contig84:28205..28277Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig84 28206..28277 -
1680870195.3775442-UTR-A-nodosum_M_contig84:28785..288111680870195.3775442-UTR-A-nodosum_M_contig84:28785..28811Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig84 28786..28811 -
1680870195.388801-UTR-A-nodosum_M_contig84:30508..305761680870195.388801-UTR-A-nodosum_M_contig84:30508..30576Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig84 30509..30576 -
1680870195.4016936-UTR-A-nodosum_M_contig84:31110..311821680870195.4016936-UTR-A-nodosum_M_contig84:31110..31182Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig84 31111..31182 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870195.3046875-CDS-A-nodosum_M_contig84:26060..262941680870195.3046875-CDS-A-nodosum_M_contig84:26060..26294Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig84 26061..26294 -
1680870195.3171947-CDS-A-nodosum_M_contig84:26800..268421680870195.3171947-CDS-A-nodosum_M_contig84:26800..26842Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig84 26801..26842 -
1680870195.3341105-CDS-A-nodosum_M_contig84:27261..274381680870195.3341105-CDS-A-nodosum_M_contig84:27261..27438Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig84 27262..27438 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig84.23.1

>prot_A-nodosum_M_contig84.23.1 ID=prot_A-nodosum_M_contig84.23.1|Name=mRNA_A-nodosum_M_contig84.23.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=151bp
MGFPFEITHETLEYAPKRYGRLRRLRPFRVTGKLHEAAVSTSRPLTGEVV
VETSECPLKSLEVQLVRVETVEQAEGQLREATEIQNLQIGDGDVCRGLAI
PIYMVLSRLFSCPTMIAPRYRVEFELNIIVCFADSEGYTATQNFQILLLV
*
back to top

mRNA from alignment at A-nodosum_M_contig84:25922..31182-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig84.23.1 ID=mRNA_A-nodosum_M_contig84.23.1|Name=mRNA_A-nodosum_M_contig84.23.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=5261bp|location=Sequence derived from alignment at A-nodosum_M_contig84:25922..31182- (Ascophyllum nodosum dioecious)
ATGTTTCAAGGCCAAGGAGAAAGCGTGGTGGACATTTGTCTCAAGCGCAA GGATAGAACGTATCGGCCGAACGTTAGTCTCTTCCGCGGGTGTGCAAGCT TGTATATGTTTGTACTTTGCTTTACATCCGGAGGGTTCCACGAAACTGCT GGACTACCGTACTGTACTTGTAAGGCGGTTTGTATAGCTGTGCTGCACAT CCTGCCTTGTATAGCATTAGCTGAAGCTACTGGCGAGTCCTACAGTCAGC CGTGTTCTCGTCGGTACAAGACAGTAGTTTGAGCAGCTGTGCTGCATGTC GACGCCGGGGGCCCTAGCAAACCTTCGAGGTGTTGGGTAAAAATTAAAAA TGAACAACCCGCGCGCTTGCTTCGAGCGGCGCTAGAAGCGTCCCGACTTT ACCTTGATATAACTTTAGAATCTTCCCCGCGGATGATTGGAATTATTCGT TCCCTGGTGCATCGGCGGCAGCCCCCCCCCCCGCCGAAAGCGAAGTCCCA TCGTCGAAGCCATCAATTGTAAAATCGTGTTTCTCATTGTCACAGCCATC AGTCGAAAGAGCTATTTATCTCAATTACAACGCTCTGTTTGCGCTCCCAT TTTCAGGATGTCTTGGAAGGTACCCTCGTGGTCAGCACTCCAGAGGCATG GGATTGCAAAGCCATTAACTTGAGGTGCGACGTCTCTACAGTGTCAAGAG ATATATATATGGCTCAGGCCCTAAACGCGCAAACGTCGACACAAAGCTTC ACGTGGCTTCTATCCACAACCCGTGGTCGCCGTCGTCGTACCCTCGCATG GCAAGGAACCTTCGACTATCTGTCGACGCTTCCACCTGTCCGACAGGCCA CACCAATAGCCTCCGATTTTTTCAGCATGCCCACTTCATACCAATAGTGG GTGTGGGGAAAGAGAGGCGTATATCAATTGGTCCATAGTAACCTGCAAAG GCAGCACCCGTTACTCGAACTACCTTGCTTGCTTGAGGGCTACTGGCCCT GCGCCGTCGGACTATCGGCAGAGAACGCCATCGGTACCCAATTGTGTGAC CCGATAAACTCGGGACTGACCTGATGGCGTATGATGGTTTTAAATATAAT AATGGACGCCACCGCGGAACTCGGGAATAATCCCGTAAGTAAGCACCAGA TTCAGCCTGAGTATGGAGATGAGCGGACTGAGGCGGGACGGGACGGGATA ATCATTGCCGAACCCGTCTCGCGAGACCAAATTCTCAGGCGCGAACGGGG ACAGGGAAATATTCATTTTCCCGGTTCAACTGACCTCGAGCAGGACTGGC AACCTTACCCGGTTGATCTATACGCTTGCTATAATATGTGATAACCATAT ATACCAGCTACAATGGTGTAATGTACGTACTCGTTACCTTTACCCGGTGC GATAGAGCTCTATCAATACAGAAGTAATGTAATAGTAATATTAATAGTCT AGTATTATAGTATTATAGTATTATAGTATTATAGTAGTGTTATAAAAGTT AAAGAGTTACTGTTCAAAATAGTCTACATGTAGAGCTATTAATATTAATA GTGCAGCAGCTCATACAGTATACCTGGTAGTGTGCATCCATGATGACATT CCGCAAACGCGTTTGCCCGGCGTTCCCGTAGCATGCAGGGCAGCGTTACC CTGGCCGAGAGTGCGAATCGCCGGAGCATATTCCGCGAGACTTCCAAGCC GCTAGCGCTTCTCCACGAGACCATCAGCATAATGGAAGCCGGGCGGTTCC CCGAGGGGCAGACAGAGATACCTTTCGAGGCGGAGGTCAAGGGCATTGGC GGAATGGTGCGGGGCTGAGGACTGCTGCTGTGTCCTCAAAAACACCAGTA TAATGCCTTTACTTGACATTAGTGACGCATATGCCCGATCGATCGTGTGC CTCTTACCTAGCGTTGAATACCATGCCATCTAATTGCCGACACCGCTCAG GACTTGTGCACTATTAATATGACAGTTCGACTCCTGTGTGTTTCTTTCCG CGAGACAGCCCTGCGTAGTCCTCCGGGAAGAATCGGAGAGAAGTTGACGC AAGGCCTTTTCTTTTCTACCTTACACGCTCGGGGCGGGGGTATGTTCTGA CGGAGATCGCGCGCTTTTTGCTACATCCACATGGTTTTGTTTCTCTTCAG CGCCGGTGGTGAGTGAATATGCCCAAAATACCTAACTATGTCCTCAACTT ACGATAGCGTTGACTGCCAGGCCCGTTGCTCGTGAAGCGCTGACTTTTTC TCCCTAAGATGTGCAACAAGTCTAGTGTTCTGCACCGCACCGGATGCTTC CGTCCTCTCGGTGACGGGTGGTGTATTGACATTTCGCTCATGGACGTCAA CGCCAAGCCGCTGCTCAACAGCTACTCGGGGGTCTATCTCTCGATCGGTG AGCGAAAAAGGCATCGAGTTCGATCCGATCGACTTCCCCCCTCGAGATAC AAAAACAAGGCCTTTCGGGAGAAGGGAGGGCCACGCGCGAAGCGATCACG TTGTCCTGAGGCAACGTTGATGGGCCGAGAGAAAACTGATTCTGCATGTT ACATTACACCTTTTTAAAAAGCACCACGCGACGGAAAACTATTGATAGGG AGGAAGGGAAAGGGGGAGTGTTAGAAACTGATCCACGAGTCACTCAATTA TGCAGTCAAAAGTCTAGTGGTCTCGTACGCCCGGGCGCGACTCCCGGTGC GCGAAGACGAACACGGAAGAAGTTGTGCGGTTCGCCCTTTCTCTTCTTCC CATTATTATGTAGGATTATGTATGATTAGATCCTTCGCATTTTCAAGACG GCTGGAGGCTCTTTCCCTCATAACATACTTGTATACAGTGTACAGTATAA CATATGTCGCGACGAGATGCGTCGCTGGAATTTTGTTTTTTGTTTTTTTC TGAAGGTTATCACATCAGCGTCAAGATCGAGCGAGGCTTGATACGCAAAG AACTTTCCTAGAAAGTCGAGTTCATCCGTGAGGAATCTTGCAGAGCATTA GGCGGTAGACAAGGACTCTGGGGCAAACTCGTACGGTTAGTCGGGGGGGG GGGGGGGGAAACAAAAAAACATGCGCTGGTCCATCCACTTTTACCAACGT ATACTCCCATTTTCCATTCAAAACTAGTACCTTGAACTAAAAGTGGAAGG CGTCGCTTGTTGTTTCGTTAAACAACACGAAGCGGGATCGTGCTGGTTCG CCCGCCCTTGTGGACTAGCCACACGTGGCGCGACCTTGTATCCTCCGGGC GTTCGGTTTGCAGATGCCATGATGCCTTTCTCTGGCGTTTCGTTTGTTTT GTTTTGCTTCGTTTTTGTCTTTATGCGCTTTCGTTGAAGCCGCGGCCCTT CGTTCAATCGTCCTTCGATATGCGGGCGCCCCGATAGCCACACGTGTTTC TTTCTTTTTTCCTTTTGTTTATTTTGGAGATGTCACTTTTTTCCGACTTT TTTTTGTACCATTTCCGCTTTCTCTTTGTATGGACTATAGAGTACGTCGG ACGTTCTTTCCTTCCGGATGGTGTTTTTTTCTACCTTGTGACCACGGGCT GGATTTTTGACATCAGCGTACGAGACGAGAGAATTCAATCAAGAAAAAAA AACACTGTATTGTTGTGTACTATGAATAGCAATGACACTACATTGTTCTA CACTATGTTGATGCCACTAACTGCCACGCGGCGACCGCTTTCCAAAAATG GGCACACACCAGTGGAGGTCCCCGGGCAGGCGCCGACGCCTCCGATGGGA TTCCCGTTCGAGATCACCCACGAAACGCTTGAGTACGCCCCCAAGCGCTA CGGCAGGCTCCGACGGTTGCGACCGTTTCGCGTGACGGGGAAGCTCCATG AGGCGGCGGTCTCCACCAGCCGCCCTTTGACGGGGGAAGTGGTTGTCGAG ACATCGGAGTGCCCGCTAAAGGTTGGCGTTTAGGAAGACAGGGGACCGGG GGAATAAAACGGATGTTTCAGGCAGCAGCGGTGCAAGAACACCGCGTCTT GGAGATTGTGTTTACTCTTTAGAACCCCACAGTACAGTTGAACCAATCAA GATAGTTTTTTATAGAAGACATAGCTGTATATATTTTTTTCTTATTTTTT TGAACGGGTCGTAAGAAATCGGACCAAACCTGAACCGATGAGAATTCGTG AAATCGTGAACGTAATTTTTTGTGCACACTCGGAGGTGTCGTGAGAGAAA AGGTCTCATGGCAAGCAGCGCTCACTACCGTGCCCGCCCAACTTGGCTGT CTTAACGGTATTGTTCGCTTCTCCACGTGGTGTCCCGACCCGCGAACCTA TAATCTGCTTTCGTGTGTGTGCGTTGGGGGGGAGGCGCAGTCGTTAGAGG TGCAGCTGGTGCGAGTGGAGACGGTCGAGCAGGTGAGCGGTTTTCGTTCG AGTCGTTGGGAAGTCGAGAGTTCCGTTGTGGTAGTGTAAGAAATTAGCTA TTAATAGCCAAGAGTCGCGCCACTCTTGAAGACCAGGCCATAACCTTAAA TAACCTTAAGTAAGCGTTTCGTTGGCAGACTGTATTTGTGTTTGTGTGAG TGTTTTGTGTATTTATTTGATGCTTTATATGCTACGCGCTTTGATTCCCC GTTAAATTCAAAGACAAATTGTTACGACACATACGGTTTGCGTGAGCATC TGAGAAAATTGTCCCCTCGCTCTATTGAAAGCACCGGGAAAAATCCCAAA GACATGGCTCGCCTGCCAAGTTTTACGAAGCCCCTGCCCCAGGCACCCCA ACCTCCGTTTACGTCGCTCCCTACCCTTGTCACAGGGCTTGAGTAATCAA CTATCACACCCAAGCTCTCCTCTGATTTTCACAGTCGCGTCGAAAGTATC TTATCTACAGTATCCTCCTTACACCTCACACCCGGCAGGCGGAAGGGCAG CTGCGGGAGGCCACCGAGATCCAAAATCTTCAGATCGGAGACGGCGACGT GTGCCGAGGCCTGGCCATCCCCATCTACATGGTGCTGTCCCGACTTTTTT CTTGCCCCACAATGATCGCGCCGCGCTACCGGGTGGAGTTCGAGCTGAAC ATCATCGTATGTTTCGCTGATTCTGAAGGATACACCGCGACACAGAATTT CCAGATACTACTGTTGGTTTAGTTTTGGAATGCTGTCGAACGGCTTCTAA TACCCCTCAAGACGTTTTCGTCACAGTAACCTAGCTGAGAGTGGGAGAGA AGATAGGATAGGCAGGAAATCAGGGTTTTGTGGAGTGCTCGTCTTATGAG GCATTATTATC
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig84:25922..31182-

>mRNA_A-nodosum_M_contig84.23.1 ID=mRNA_A-nodosum_M_contig84.23.1|Name=mRNA_A-nodosum_M_contig84.23.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=453bp|location=Sequence derived from alignment at A-nodosum_M_contig84:25922..31182- (Ascophyllum nodosum dioecious)
ATGGGATTCCCGTTCGAGATCACCCACGAAACGCTTGAGTACGCCCCCAA
GCGCTACGGCAGGCTCCGACGGTTGCGACCGTTTCGCGTGACGGGGAAGC
TCCATGAGGCGGCGGTCTCCACCAGCCGCCCTTTGACGGGGGAAGTGGTT
GTCGAGACATCGGAGTGCCCGCTAAAGTCGTTAGAGGTGCAGCTGGTGCG
AGTGGAGACGGTCGAGCAGGCGGAAGGGCAGCTGCGGGAGGCCACCGAGA
TCCAAAATCTTCAGATCGGAGACGGCGACGTGTGCCGAGGCCTGGCCATC
CCCATCTACATGGTGCTGTCCCGACTTTTTTCTTGCCCCACAATGATCGC
GCCGCGCTACCGGGTGGAGTTCGAGCTGAACATCATCGTATGTTTCGCTG
ATTCTGAAGGATACACCGCGACACAGAATTTCCAGATACTACTGTTGGTT
TAG
back to top