mRNA_A-nodosum_M_contig836.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig836.2.1
Unique NamemRNA_A-nodosum_M_contig836.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig836.2.1 vs. uniprot
Match: A0A6H5JV80_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV80_9PHAE)

HSP 1 Score: 258 bits (658), Expect = 1.090e-74
Identity = 161/485 (33.20%), Postives = 257/485 (52.99%), Query Frame = 1
Query:   10 EMDGQIVRGVWKVVDR-RKGNTVLGTKIVFKWKVGQDGRVDKYKRRFLGQGFRKIKGIHYQESSSPIPTQSSIRMALAVMALLDWEGRQLDV*MAFLEADVVEELYVELPDGYHDSPNQVGRLQKVMYGLMHAGLLWSKKFGGELIAKGFERSQADPCVFRRKHLGKVVVIIVVYVDELL---------VLSETKQDDFPIKDLGEIPYYLECHITRDRKVRTVVFDQQRYAQTVTERFEIRKTSVISFLRREHHFRRADGPQNDAKIA----PMRGIPYREAAGALI*VANMTRLDLAYTAHTLAKFGDNPGPEHRKAVMKALQCLKRTASLGVTYEGATEDVMKLSVWVDADHARCLDTPRSVSGGAVMLDGESISLFLRAQRVTTTAMSESDYVALAEIANKLRFLWQVKAFMAPLIDCNN-RVHEDTEDAIKMAENRFSSRRRRHIDVKHHMVRDAVDGGIPDVEYFKSGEQRADVLTKAI 1419
            E++G I  G + +  +  +G  V+  + VFKWK  + G++ K K R + +GF++  G+ Y E+ SP    +SIR+ +A+    + E   LD+  AF ++ +  E+ ++LP G      ++ RL K +YGL  A   + K+   +L+  GFE+S +DPCV R     +V+ II ++VD++L         V+ E   D  P K+LGE+ ++L C  +RDR+  T+   Q+ Y ++V ERF I +TS I              P ND++          +P+RE  G L+ +AN TR + +    T+A+    P     KA  K L  LK TA L + Y+  T   +   V+VDAD A      RSVSG  V++ G  +S F   Q+  + + SE++Y+A+ +   +  F+  +   + P        V ED E AI +AEN  SS R +HIDV+HH +R+  + G+ +V +  S EQ AD+LTKA+
Sbjct:  235 EVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFFQSKLDHEVLMKLPPGCDSMSGKIVRLNKSLYGLKQASRTFYKRLVSDLLRIGFEQSLSDPCVLRFMMGDEVMGIIAIHVDDILYAGTKRLAEVIVEALGDSLPTKNLGEVRFFLGCAFSRDREAGTIEISQESYIRSVLERFNICRTSSIPA-----------SPANDSRSVMEDEEAGDVPFREVVGCLMWIANNTRPETSNAVRTVARHSHEPKKSDWKAAQKILSYLKETAHLTLKYKQDTTVDVGTLVYVDADFASKATDRRSVSGALVLVAGCLVSWFSWTQKCVSLSTSEAEYIAMGDGVKEALFVNGMLQLLRPSAKPRKIDVFEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKAL 708          
BLAST of mRNA_A-nodosum_M_contig836.2.1 vs. uniprot
Match: A0A8K1CTN1_PYTOL (Uncharacterized protein n=2 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CTN1_PYTOL)

HSP 1 Score: 247 bits (631), Expect = 1.050e-72
Identity = 159/484 (32.85%), Postives = 256/484 (52.89%), Query Frame = 1
Query:    1 LKREMDGQIVRGVWKVVDRRKGNTVLGTKIVFKWKVGQDGRVDKYKRRFLGQGFRKIKGIHYQESSSPIPTQSSIRMALAVMALLDWEGRQLDV*MAFLEADVVEELYVELPDGYHDSPNQVGRLQKVMYGLMHAGLLWSKKFGGELIAKGFERSQADPCVFRRKHLGKVVVIIVVYVDELLV--LSETKQDD--------FPIKDLGEIPYYLECHITRDRKVRTVVFDQQRYAQTVTERFEIRKT-SVISFLRREHHFRRADGPQNDAKIAPMRGIPYREAAGALI*VANMTRLDLAYTAHTLAKFGDNPGPEHRKAVMKALQCLKRTASLGVTYEGATEDVMKLSVWVDADHARCLDTPRSVSGGAVMLDGESISLFLRAQRVTTTAMSESDYVALAEIANKLRFLWQVKAFMAPLIDCNNRVHEDTEDAIKMAENRFSSRRRRHIDVKHHMVRDAVDGGIPDVEYFKSGEQRADVLTKAI 1419
            +K E D     G W  V R+    V+ TK VF  K  + G + ++K R +  GF ++ G+ + E+ + + +  SIR+ L+V     +   QLDV  AFL AD+ E++Y+E P+G     ++V +L K +YGL  AG  W K   G LI  GF+   +D C++  +  G     I +YVD+++V   ++T+ D+        F IK+LG + + L   I  DR  R +  +Q  Y +T+ ERF  +    V +   +     +ADGP++D + A M   PYR   G L  VA  TR D+A+    L++F +NPGP H  A ++ L+ LK T   G++Y G  E+   + V+ DAD    +D  RSVSG  +M++G  I    + Q     + SE++Y+AL+    ++ ++  +   +   I    +V ED + AI +A N     R +HID++HH VRD V   +  + Y ++  Q AD+LTK++
Sbjct:   13 VKAEFDAHSRNGTWTKVKRQTWMKVIKTKWVFAKKFNEHGDILRWKARLVALGFLQLFGVDFFETYAAVASMGSIRIFLSVCCAAGYILEQLDVDTAFLNADLKEDVYIEPPEGLKVDGDRVLKLNKALYGLKQAGNAWFKTIHGALIDLGFKPCGSDTCIYVGR-AGGDTTYICLYVDDMVVGGRTQTRVDEVKKLIAARFRIKELGPVKHLLGMEIVYDRVKRYLSINQAHYVKTLVERFNQQSCRDVTNPCEQSLKLSKADGPRDDQQKAEMSKRPYRSLIGCLQYVAQCTRPDIAFAVTHLSRFMENPGPRHWTAAIRVLRYLKSTRDYGISYGGDHEENTPV-VFCDADWGTSVDDRRSVSGLVIMMNGGPIVFKAKYQSTVALSSSEAEYLALSLCGQEVMWVRTMLHDLGINIKKPIQVWEDNQGAIALAHNAGYHARTKHIDIRHHYVRDLVADSVIKLSYVETQRQLADILTKSL 494          
BLAST of mRNA_A-nodosum_M_contig836.2.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 253 bits (646), Expect = 1.670e-70
Identity = 158/485 (32.58%), Postives = 263/485 (54.23%), Query Frame = 1
Query:    1 LKREMDGQIVRGVWKVVDRR-KGNTVLGTKIVFKWKVGQDGRVDKYKRRFLGQGFRKIKGIHYQESSSPIPTQSSIRMALAVMALLDWEGRQLDV*MAFLEADVVEELYVELPDGYHDSPNQVGRLQKVMYGLMHAGLLWSKKFGGELIAKGFERSQADPCVFRRKHLGKVVVIIVVYVDELLVLSETKQDD---------FPIKDLGEIPYYLECHITRDRKVRTVVFDQQRYAQTVTERFEIRKTSVISFLRREHHFRRAD-GPQNDAKIAPMRGIPYREAAGALI*VANMTRLDLAYTAHTLAKFGDNPGPEHRKAVMKALQCLKRTASLGVTYEGATEDVMKLSVWVDADHARCLDTPRSVSGGAVMLDGESISLFLRAQRVTTTAMSESDYVALAEIANKLRFLWQVKAFMAPLIDCNN-RVHEDTEDAIKMAENRFSSRRRRHIDVKHHMVRDAVDGGIPDVEYFKSGEQRADVLTKAI 1419
            ++ E +G +  G +  VD   +G   + +K  F WK  ++G++D +K R + +GF +I  + Y  SSSP P+ +SI++ LAV           DV  A+  A + EE++++LP G  D  +++ + ++ +YGL  +G  W       L+  GFE+ +ADPCVFR+     VV+IIV+YVD++LV    +  +         FP K+LGE  ++  C I RD +  T+   Q  Y  ++ ERF+++ TS I           AD GP+ + +       P REA G+++ V+  +R D+++    +A+    P   H  A+ K L  LK T  LG+TY+  +   + L+V+VDA +A   D  RSVSG A  + G  +S   + Q + + + +E++Y+A  E   +  F+  V +F+AP    ++ +V ED + AI + +N  SS R +HIDV++H +R     G   V++  + EQ AD+LTKA+
Sbjct:  756 MREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPG------ADLGPKREDEEGGEW--PVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSG--LGLAVYVDASYADTEDR-RSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKAL 1229          
BLAST of mRNA_A-nodosum_M_contig836.2.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 253 bits (646), Expect = 2.700e-70
Identity = 158/485 (32.58%), Postives = 263/485 (54.23%), Query Frame = 1
Query:    1 LKREMDGQIVRGVWKVVDRR-KGNTVLGTKIVFKWKVGQDGRVDKYKRRFLGQGFRKIKGIHYQESSSPIPTQSSIRMALAVMALLDWEGRQLDV*MAFLEADVVEELYVELPDGYHDSPNQVGRLQKVMYGLMHAGLLWSKKFGGELIAKGFERSQADPCVFRRKHLGKVVVIIVVYVDELLVLSETKQDD---------FPIKDLGEIPYYLECHITRDRKVRTVVFDQQRYAQTVTERFEIRKTSVISFLRREHHFRRAD-GPQNDAKIAPMRGIPYREAAGALI*VANMTRLDLAYTAHTLAKFGDNPGPEHRKAVMKALQCLKRTASLGVTYEGATEDVMKLSVWVDADHARCLDTPRSVSGGAVMLDGESISLFLRAQRVTTTAMSESDYVALAEIANKLRFLWQVKAFMAPLIDCNN-RVHEDTEDAIKMAENRFSSRRRRHIDVKHHMVRDAVDGGIPDVEYFKSGEQRADVLTKAI 1419
            ++ E +G +  G +  VD   +G   + +K  F WK  ++G++D +K R + +GF +I  + Y  SSSP P+ +SI++ LAV           DV  A+  A + EE++++LP G  D  +++ + ++ +YGL  +G  W       L+  GFE+ +ADPCVFR+     VV+IIV+YVD++LV    +  +         FP K+LGE  ++  C I RD +  T+   Q  Y  ++ ERF+++ TS I           AD GP+ + +       P REA G+++ V+  +R D+++    +A+    P   H  A+ K L  LK T  LG+TY+  +   + L+V+VDA +A   D  RSVSG A  + G  +S   + Q + + + +E++Y+A  E   +  F+  V +F+AP    ++ +V ED + AI + +N  SS R +HIDV++H +R     G   V++  + EQ AD+LTKA+
Sbjct: 1135 MREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPG------ADLGPKREDEEGGEW--PVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSG--LGLAVYVDASYADTEDR-RSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKAL 1608          
BLAST of mRNA_A-nodosum_M_contig836.2.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 253 bits (646), Expect = 2.740e-70
Identity = 158/485 (32.58%), Postives = 263/485 (54.23%), Query Frame = 1
Query:    1 LKREMDGQIVRGVWKVVDRR-KGNTVLGTKIVFKWKVGQDGRVDKYKRRFLGQGFRKIKGIHYQESSSPIPTQSSIRMALAVMALLDWEGRQLDV*MAFLEADVVEELYVELPDGYHDSPNQVGRLQKVMYGLMHAGLLWSKKFGGELIAKGFERSQADPCVFRRKHLGKVVVIIVVYVDELLVLSETKQDD---------FPIKDLGEIPYYLECHITRDRKVRTVVFDQQRYAQTVTERFEIRKTSVISFLRREHHFRRAD-GPQNDAKIAPMRGIPYREAAGALI*VANMTRLDLAYTAHTLAKFGDNPGPEHRKAVMKALQCLKRTASLGVTYEGATEDVMKLSVWVDADHARCLDTPRSVSGGAVMLDGESISLFLRAQRVTTTAMSESDYVALAEIANKLRFLWQVKAFMAPLIDCNN-RVHEDTEDAIKMAENRFSSRRRRHIDVKHHMVRDAVDGGIPDVEYFKSGEQRADVLTKAI 1419
            ++ E +G +  G +  VD   +G   + +K  F WK  ++G++D +K R + +GF +I  + Y  SSSP P+ +SI++ LAV           DV  A+  A + EE++++LP G  D  +++ + ++ +YGL  +G  W       L+  GFE+ +ADPCVFR+     VV+IIV+YVD++LV    +  +         FP K+LGE  ++  C I RD +  T+   Q  Y  ++ ERF+++ TS I           AD GP+ + +       P REA G+++ V+  +R D+++    +A+    P   H  A+ K L  LK T  LG+TY+  +   + L+V+VDA +A   D  RSVSG A  + G  +S   + Q + + + +E++Y+A  E   +  F+  V +F+AP    ++ +V ED + AI + +N  SS R +HIDV++H +R     G   V++  + EQ AD+LTKA+
Sbjct: 1155 MREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPG------ADLGPKREDEEGGEW--PVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSG--LGLAVYVDASYADTEDR-RSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKAL 1628          
BLAST of mRNA_A-nodosum_M_contig836.2.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 253 bits (646), Expect = 2.790e-70
Identity = 158/485 (32.58%), Postives = 263/485 (54.23%), Query Frame = 1
Query:    1 LKREMDGQIVRGVWKVVDRR-KGNTVLGTKIVFKWKVGQDGRVDKYKRRFLGQGFRKIKGIHYQESSSPIPTQSSIRMALAVMALLDWEGRQLDV*MAFLEADVVEELYVELPDGYHDSPNQVGRLQKVMYGLMHAGLLWSKKFGGELIAKGFERSQADPCVFRRKHLGKVVVIIVVYVDELLVLSETKQDD---------FPIKDLGEIPYYLECHITRDRKVRTVVFDQQRYAQTVTERFEIRKTSVISFLRREHHFRRAD-GPQNDAKIAPMRGIPYREAAGALI*VANMTRLDLAYTAHTLAKFGDNPGPEHRKAVMKALQCLKRTASLGVTYEGATEDVMKLSVWVDADHARCLDTPRSVSGGAVMLDGESISLFLRAQRVTTTAMSESDYVALAEIANKLRFLWQVKAFMAPLIDCNN-RVHEDTEDAIKMAENRFSSRRRRHIDVKHHMVRDAVDGGIPDVEYFKSGEQRADVLTKAI 1419
            ++ E +G +  G +  VD   +G   + +K  F WK  ++G++D +K R + +GF +I  + Y  SSSP P+ +SI++ LAV           DV  A+  A + EE++++LP G  D  +++ + ++ +YGL  +G  W       L+  GFE+ +ADPCVFR+     VV+IIV+YVD++LV    +  +         FP K+LGE  ++  C I RD +  T+   Q  Y  ++ ERF+++ TS I           AD GP+ + +       P REA G+++ V+  +R D+++    +A+    P   H  A+ K L  LK T  LG+TY+  +   + L+V+VDA +A   D  RSVSG A  + G  +S   + Q + + + +E++Y+A  E   +  F+  V +F+AP    ++ +V ED + AI + +N  SS R +HIDV++H +R     G   V++  + EQ AD+LTKA+
Sbjct: 1298 MREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPG------ADLGPKREDEEGGEW--PVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSG--LGLAVYVDASYADTEDR-RSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKAL 1771          
BLAST of mRNA_A-nodosum_M_contig836.2.1 vs. uniprot
Match: A0A6H5JKS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKS3_9PHAE)

HSP 1 Score: 252 bits (644), Expect = 3.120e-70
Identity = 163/485 (33.61%), Postives = 255/485 (52.58%), Query Frame = 1
Query:    1 LKREMDGQIVRGVWKVVDRR-KGNTVLGTKIVFKWKVGQDGRVDKYKRRFLGQGFRKIKGIHYQESSSPIPTQSSIRMALAVMALLDWEGRQLDV*MAFLEADVVEELYVELPDGYHDSPNQVGRLQKVMYGLMHAGLLWSKKFGGELIAKGFERSQADPCVFRRKHLGKVVVIIVVYVDELLVLSETKQDD---------FPIKDLGEIPYYLECHITRDRKVRTVVFDQQRYAQTVTERFEIRKT-SVISFLRREHHFRRADGPQNDAKIAPMRGIPYREAAGALI*VANMTRLDLAYTAHTLAKFGDNPGPEHRKAVMKALQCLKRTASLGVTYEGATEDVMKLSVWVDADHARCLDTPRSVSGGAVMLDGESISLFLRAQRVTTTAMSESDYVALAEIANKLRFLWQVKAFMAPLID-CNNRVHEDTEDAIKMAENRFSSRRRRHIDVKHHMVRDAVDGGIPDVEYFKSGEQRADVLTKAI 1419
            +K+EMDG    G +  +++  +G   + TK VF +K  + G +  +K R + +GF ++ G  Y  SSS  P  SSI++A+A         R  D+  A+  A + EELYV + DG      +V ++++ +YGL  +G  W  +    L+  G+E+ +ADPCVFR+   GKVV IIV+YVD+++ +   ++ +          P+KDLGE  +Y  C I RD ++ T    Q+ Y   + +RF I  T S  +    E   +R D P  D         P R+A G L+  A  TR D+A   + + +    P     KA+++ L  L  T  LG+TY   +   + L V+VDA +A      RSV+G AV + G  +S   + QR+ + + SE++Y+A  E   +  F+  V +F+AP       +V ED + AI + +N FSS R +HIDV+ H +R+    G   VEY  + EQ AD+LTKA+
Sbjct:  755 IKKEMDGHEKTGTFSKIEKLPEGRKAVSTKWVFDYKTDEKGLITDFKARLVARGFSQVHGQDYHHSSSACPAVSSIKLAMAFATEGGLPTRHFDIKQAYTHAKIQEELYVRIADGSGAMAGKVLKVERALYGLKQSGREWGFEAANILVDSGYEQCRADPCVFRKIVDGKVVSIIVIYVDDIMYVGSEEEGEELLTSLRKTLPVKDLGECTWYDGCAIERDLELGTTTLSQKAYIAGLMDRFGITTTASTPADPNAELGPKRDDEPGVDK--------PVRQAIGCLMWPATFTRPDIATALNAVQRNAHAPTMRDWKALVQILSYLNATMDLGITYVRGSG--LDLEVYVDASYADRDTGRRSVTGIAVTVGGTVVSHASKTQRIVSLSTSEAEYIAAGEGVKEALFVRAVLSFIAPETSGAKIKVLEDNQGAISLVQNPFSSARSKHIDVRFHFIRELFKSGRISVEYIPTDEQHADLLTKAL 1229          
BLAST of mRNA_A-nodosum_M_contig836.2.1 vs. uniprot
Match: A0A6H5L175_9PHAE (Uncharacterized protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L175_9PHAE)

HSP 1 Score: 252 bits (644), Expect = 5.140e-70
Identity = 163/489 (33.33%), Postives = 256/489 (52.35%), Query Frame = 1
Query:    1 LKREMDGQIVRGVWKVVDRR-KGNTVLGTKIVFKWKVGQDGRVDKYKRRFLGQGFRKIKGIHYQESSSPIPTQSSIRMALAVMALLDWEGRQLDV*MAFLEADVVEELYVELPDGYHDSPNQVGRLQKVMYGLMHAGLLWSKKFGGELIAKGFERSQADPCVFRRKHLGKVVVIIVVYVDELLVLSETKQDD---------FPIKDLGEIPYYLECHITRDRKVRTVVFDQQRYAQTVTERFEIRKTSVISFLRREHHFRRAD-----GPQNDAKIAPMRGIPYREAAGALI*VANMTRLDLAYTAHTLAKFGDNPGPEHRKAVMKALQCLKRTASLGVTYEGATEDVMKLSVWVDADHARCLDTPRSVSGGAVMLDGESISLFLRAQRVTTTAMSESDYVALAEIANKLRFLWQVKAFMAPLID-CNNRVHEDTEDAIKMAENRFSSRRRRHIDVKHHMVRDAVDGGIPDVEYFKSGEQRADVLTKAI 1419
            +K+EMDG    G +  +++  +G   + TK VF +K  + G +  +K R + +GF ++ G  Y  SSS  P  SSI++A+A         R  D+  A+  A + EELYV + DG      +V ++++ +YGL  +G  W  +    L+  G+E+ +ADPCVFR+   GKVV IIV+YVD+++ +   ++ +          P+KDLGE  +Y  C I RD ++ T    Q+ Y   + +RF I  T+             AD     GP+ D +  P    P R+A G L+  A  TR D+A   + + +    P     KA+++ L  L  T  LG+TY   +   + L V+VDA +A      RSV+G AV + G  +S   + QR+ + + SE++Y+A  E   +  F+  V +F+AP       +V ED + AI + +N FSS R +HIDV+ H +R+    G   VEY  + EQ AD+LTKA+
Sbjct: 1308 IKKEMDGHEKTGTFSKIEKLPEGRKAVSTKWVFDYKTDEKGLITDFKARLVARGFSQVHGQDYHHSSSACPAVSSIKLAMAFATEGGLPTRHFDIKQAYTHAKIQEELYVRIADGSGAMAGKVLKVERALYGLKQSGREWGFEAANILVDSGYEQCRADPCVFRKIVDGKVVSIIVIYVDDIMYVGSEEEGEELLTSLRKTLPVKDLGECTWYDGCAIERDLELGTTTLSQKAYIAGLMDRFGITTTASTP----------ADPNADLGPKRDDE--PGVDKPVRQAIGCLMWPATFTRPDIATALNAVQRNAHAPTMRDWKALVQILSYLNATMDLGITYVRGSG--LDLEVYVDASYADRDTGRRSVTGIAVTVGGTVVSHASKTQRIVSLSTSEAEYIAAGEGVKEALFVRAVLSFIAPETSGAKIKVLEDNQGAISLVQNPFSSARSKHIDVRFHFIRELFKSGRISVEYIPTDEQHADLLTKAL 1782          
BLAST of mRNA_A-nodosum_M_contig836.2.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE)

HSP 1 Score: 249 bits (635), Expect = 6.950e-69
Identity = 151/465 (32.47%), Postives = 245/465 (52.69%), Query Frame = 1
Query:   64 GNTVLGTKIVFKWKVGQDGRVDKYKRRFLGQGFRKIKGIHYQESSSPIPTQSSIRMALAVMALLDWEGRQLDV*MAFLEADVVEELYVELPDGYHDSPNQVGRLQKVMYGLMHAGLLWSKKFGGELIAKGFERSQADPCVFRRKHLGKVVVIIVVYVDELL---------VLSETKQDDFPIKDLGEIPYYLECHITRDRKVRTVVFDQQRYAQTVTERFEIRKTSVISFLRREHHFRRADGPQNDAKIAPMRG---IPYREAAGALI*VANMTRLDLAYTAHTLAKFGDNPGPEHRKAVMKALQCLKRTASLGVTYEGATEDVMKLSVWVDADHARCLDTPRSVSGGAVMLDGESISLFLRAQRVTTTAMSESDYVALAEIANKLRFLWQVKAFMAPLIDCNN-RVHEDTEDAIKMAENRFSSRRRRHIDVKHHMVRDAVDGGIPDVEYFKSGEQRADVLTKAI 1419
            G  V+  + VFKWK  + G++ K K R + +GF++  G+ Y E+ SP    +S R+ +A+    + E    D+  AF+++++  E+++++P G      +V RL K +YGL  A   + K+   EL   GFE+S +DPCV R     +VV ++ ++VD++L         V+     D  P K+LGE+ ++L C   RDRK  T+   Q+ Y ++V ERF I +TS I           A    +D  +    G   +P+RE  G+L+ +A+ TR D++     +A+    P   H KA  K L  L  TA L + ++  +   +   V+VDAD A      RSVSG  V +    +    R Q+  + + SE++Y+A+ +   +  F+  +  F+ P +      V ED E AI +AEN  SS R +HIDV+HH +R+  + G+ +V +  S EQ AD+LTKA+
Sbjct:  930 GCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASFRLVVALACKYNLELLHWDIEQAFVQSELDHEVFMKMPPGCGSMSEKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILYAGTKSLAEVVVAALGDSLPTKNLGEVKFFLGCEYIRDRKAGTIEISQESYIRSVLERFNIVRTSSIP----------ASLNNDDRSLMEEEGAGDVPFREVVGSLMWIASQTRADISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKRDSSVDVGTLVYVDADFASKATDRRSVSGAMVFVAAMLVVWISRTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSVKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKAL 1384          
BLAST of mRNA_A-nodosum_M_contig836.2.1 vs. uniprot
Match: A0A6H5L3I1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3I1_9PHAE)

HSP 1 Score: 247 bits (630), Expect = 2.000e-68
Identity = 151/465 (32.47%), Postives = 244/465 (52.47%), Query Frame = 1
Query:   64 GNTVLGTKIVFKWKVGQDGRVDKYKRRFLGQGFRKIKGIHYQESSSPIPTQSSIRMALAVMALLDWEGRQLDV*MAFLEADVVEELYVELPDGYHDSPNQVGRLQKVMYGLMHAGLLWSKKFGGELIAKGFERSQADPCVFRRKHLGKVVVIIVVYVDELL---------VLSETKQDDFPIKDLGEIPYYLECHITRDRKVRTVVFDQQRYAQTVTERFEIRKTSVISFLRREHHFRRADGPQNDAKIAPMRG---IPYREAAGALI*VANMTRLDLAYTAHTLAKFGDNPGPEHRKAVMKALQCLKRTASLGVTYEGATEDVMKLSVWVDADHARCLDTPRSVSGGAVMLDGESISLFLRAQRVTTTAMSESDYVALAEIANKLRFLWQVKAFMAPLIDCNN-RVHEDTEDAIKMAENRFSSRRRRHIDVKHHMVRDAVDGGIPDVEYFKSGEQRADVLTKAI 1419
            G  V+  + VFKWK  + G++ K K R + +GF++  G+ Y E+ SP    +S R+ +A+    + E    D+  AF+++++  E+++++P G      +V RL K +YGL  A   + K+   EL   GFE+S +DPCV       +VV ++ ++VD++L         V+     D  P K+LGE+ ++L C   RDRK  T+   Q+ Y ++V ERF I +TS I           A    +D  +    G   +P+RE  G+L+ +A+ TR D++     +A+    P   H KA  K L  L  TA L + ++  +   +   V+VDAD A      RSVSG  V +    +    R Q+  + + SES+Y+A+ +   +  F+  +  F+ P +      V ED E AI +AEN  SS R +HIDV+HH +R+  + G+ +V +  S EQ AD+LTKA+
Sbjct:  720 GCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASFRLVVALACKYNLELLHWDIEQAFVQSELDHEVFMKMPPGCGSMSEKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLCFMMGDEVVGMVAIHVDDILYAGTKSLAEVVVAALGDSLPTKNLGEVKFFLGCEYIRDRKAGTIEISQESYIRSVLERFNIVRTSSIP----------ASLNNDDRSLMEEEGAGDVPFREVVGSLMWIASQTRADISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKRDSSVDVGTLVYVDADFASKATDRRSVSGAMVFVAAMLVVWISRTQKCVSQSTSESEYLAMGDGVKEALFVNGMLQFLRPSVKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKAL 1174          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig836.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JV80_9PHAE1.090e-7433.20Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A8K1CTN1_PYTOL1.050e-7232.85Uncharacterized protein n=2 Tax=Pythium oligandrum... [more]
A0A6H5KSG8_9PHAE1.670e-7032.58Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE2.700e-7032.58Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE2.740e-7032.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE2.790e-7032.58Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5JKS3_9PHAE3.120e-7033.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L175_9PHAE5.140e-7033.33Uncharacterized protein n=9 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZH7_9PHAE6.950e-6932.47Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L3I1_9PHAE2.000e-6832.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig836contigA-nodosum_M_contig836:53922..55370 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog67593.Physo139221
PFAMsRVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size1419
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.51e-27
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QGIS@4776|Peronosporales
Descriptiontransposition, RNA-mediated
Cds size576
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870186.9211078-CDS-A-nodosum_M_contig836:53921..544971680870186.9211078-CDS-A-nodosum_M_contig836:53921..54497Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig836 53922..54497 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870186.9340477-UTR-A-nodosum_M_contig836:54497..547681680870186.9340477-UTR-A-nodosum_M_contig836:54497..54768Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig836 54498..54768 -
1680870186.944485-UTR-A-nodosum_M_contig836:54798..553701680870186.944485-UTR-A-nodosum_M_contig836:54798..55370Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig836 54799..55370 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig836.2.1prot_A-nodosum_M_contig836.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig836 53922..54497 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig836.2.1

>prot_A-nodosum_M_contig836.2.1 ID=prot_A-nodosum_M_contig836.2.1|Name=mRNA_A-nodosum_M_contig836.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=192bp
MTRLDLAYTAHTLAKFGDNPGPEHRKAVMKALQCLKRTASLGVTYEGATE
DVMKLSVWVDADHARCLDTPRSVSGGAVMLDGESISLFLRAQRVTTTAMS
ESDYVALAEIANKLRFLWQVKAFMAPLIDCNNRVHEDTEDAIKMAENRFS
SRRRRHIDVKHHMVRDAVDGGIPDVEYFKSGEQRADVLTKAI
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mRNA from alignment at A-nodosum_M_contig836:53922..55370-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig836.2.1 ID=mRNA_A-nodosum_M_contig836.2.1|Name=mRNA_A-nodosum_M_contig836.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1449bp|location=Sequence derived from alignment at A-nodosum_M_contig836:53922..55370- (Ascophyllum nodosum dioecious)
CTCAAGCGCGAGATGGACGGCCAGATTGTGCGTGGTGTGTGGAAGGTCGT CGATCGGCGCAAAGGAAACACCGTACTCGGCACTAAGATCGTTTTTAAGT GGAAGGTTGGCCAGGATGGCCGAGTAGACAAGTACAAGCGCCGCTTCCTG GGCCAGGGTTTCCGTAAGATCAAGGGGATTCACTACCAAGAGTCATCGTC GCCGATACCTACGCAGTCGAGCATCCGGATGGCGCTGGCGGTGATGGCCC TGCTGGACTGGGAGGGGCGGCAGCTTGACGTATGAATGGCGTTTCTCGAG GCGGATGTTGTGGAGGAGCTCTACGTTGAGCTCCCCGACGGGTATCATGA CTCGCCGAACCAGGTTGGACGATTACAGAAGGTCATGTACGGTCTGATGC ACGCCGGACTACTCTGGTCGAAGAAGTTTGGTGGAGAGCTGATAGCGAAG GGGTTCGAGAGGTCCCAAGCCGATCCTTGCGTGTTCCGGCGGAAACATCT AGGGAAGGTTGTCGTCATCATCGTGGTCTACGTCGACGAGCTACTAGTGC TGAGCGAAACGAAGCAGGACGAGTAACAGGCGCCGGAAGACCTTTGATCC AGCTTCCCCATCAAGGATCTAGGGGAGATCCCATACTACCTGGAATGTCA CATTACTCGGGACCGCAAGGTGAGGACGGTGGTGTTCGATCAGCAGCGTT ATGCGCAAACGGTAACCGAGCGATTCGAAATTCGGAAGACCAGCGTGATC TCGTTTCTACGGAGAGAGCATCACTTTCGAAGGGCAGACGGGCCGCAGAA CGACGCTAAGATCGCACCGATGCGCGGCATCCCGTATCGCGAGGCAGCAG GGGCACTAATTTGAGTAGCCAACATGACTCGGCTTGACCTCGCTTACACC GCGCATACGCTCGCCAAGTTCGGTGACAACCCCGGGCCTGAGCACCGGAA GGCAGTAATGAAAGCACTGCAGTGCCTGAAACGGACGGCGAGCCTAGGGG TAACATATGAAGGCGCGACGGAGGACGTCATGAAGCTATCGGTGTGGGTG GACGCCGATCACGCACGATGCCTAGATACGCCCCGCTCGGTATCAGGGGG CGCGGTGATGCTCGATGGAGAGTCAATCAGTTTGTTTTTGCGGGCGCAGA GAGTAACCACGACAGCGATGTCTGAATCGGACTACGTAGCTCTGGCGGAG ATAGCGAATAAGTTACGTTTCCTTTGGCAGGTGAAAGCGTTTATGGCACC TCTAATCGACTGCAACAACCGTGTTCACGAGGACACTGAGGACGCTATCA AGATGGCAGAGAATAGGTTTAGCAGTCGACGAAGAAGACACATCGACGTG AAGCATCATATGGTTCGGGATGCCGTCGATGGGGGAATACCCGACGTAGA GTATTTCAAGTCGGGAGAACAGCGTGCGGACGTACTAACTAAGGCGATA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig836:53922..55370-

>mRNA_A-nodosum_M_contig836.2.1 ID=mRNA_A-nodosum_M_contig836.2.1|Name=mRNA_A-nodosum_M_contig836.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=576bp|location=Sequence derived from alignment at A-nodosum_M_contig836:53922..55370- (Ascophyllum nodosum dioecious)
ATGACTCGGCTTGACCTCGCTTACACCGCGCATACGCTCGCCAAGTTCGG
TGACAACCCCGGGCCTGAGCACCGGAAGGCAGTAATGAAAGCACTGCAGT
GCCTGAAACGGACGGCGAGCCTAGGGGTAACATATGAAGGCGCGACGGAG
GACGTCATGAAGCTATCGGTGTGGGTGGACGCCGATCACGCACGATGCCT
AGATACGCCCCGCTCGGTATCAGGGGGCGCGGTGATGCTCGATGGAGAGT
CAATCAGTTTGTTTTTGCGGGCGCAGAGAGTAACCACGACAGCGATGTCT
GAATCGGACTACGTAGCTCTGGCGGAGATAGCGAATAAGTTACGTTTCCT
TTGGCAGGTGAAAGCGTTTATGGCACCTCTAATCGACTGCAACAACCGTG
TTCACGAGGACACTGAGGACGCTATCAAGATGGCAGAGAATAGGTTTAGC
AGTCGACGAAGAAGACACATCGACGTGAAGCATCATATGGTTCGGGATGC
CGTCGATGGGGGAATACCCGACGTAGAGTATTTCAAGTCGGGAGAACAGC
GTGCGGACGTACTAACTAAGGCGATA
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