mRNA_A-nodosum_M_contig836.10.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig836.10.1
Unique NamemRNA_A-nodosum_M_contig836.10.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
[Close]
BLAST of mRNA_A-nodosum_M_contig836.10.1 vs. uniprot
Match: D7FWL5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWL5_ECTSI)

HSP 1 Score: 178 bits (451), Expect = 1.640e-47
Identity = 97/163 (59.51%), Postives = 107/163 (65.64%), Query Frame = 2 
Query:  197 APITLTDRAAAHLTHLMANKPDTIGVRLGVKRRGCNGLSYTLKYADERPKGDEVVIIPAVPTEPKSGPELAVLEAKLVAAGGEEVLEEGARGAGDKGGAAIVEGGLGAT--TPQSVTLFVDPMATLYIAGTVMDWEETELSSEFTFRNPNAKGECGCGESFNV 679
            APITLTDRAA+HL  L+ANKP  +GVRLGVKRRGCNG+SYTLKYADE+PKGDE V++                       GG     +   G G++ GA                V LFVDPMATLYIAGTVMDWEETELSSEFTF NPNAKGECGCGESFNV
Sbjct:  128 APITLTDRAASHLVSLVANKPGKVGVRLGVKRRGCNGMSYTLKYADEKPKGDEEVVV----------------------RGGRPQTGQREHGEGEREGAXXXXXXXXXXXGNGDGVKLFVDPMATLYIAGTVMDWEETELSSEFTFTNPNAKGECGCGESFNV 268
[Close]
BLAST of mRNA_A-nodosum_M_contig836.10.1 vs. uniprot
Match: A0A836C8P3_9STRA (Fe-S_biosyn domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8P3_9STRA)

HSP 1 Score: 132 bits (332), Expect = 5.650e-33
Identity = 74/154 (48.05%), Postives = 82/154 (53.25%), Query Frame = 2 
Query:  218 RAAAHLTHLMANKPDTIGVRLGVKRRGCNGLSYTLKYADERPKGDEVVIIPAVPTEPKSGPELAVLEAKLVAAGGEEVLEEGARGAGDKGGAAIVEGGLGATTPQSVTLFVDPMATLYIAGTVMDWEETELSSEFTFRNPNAKGECGCGESFNV 679
            RAA  +  L+  KP  +GVRLGVKRRGCNG SYTL YADE+P  DE                              EV E+G R                        +FVDP+AT YI GT MDWEETELSSEFTF+NPNAKG CGCGESFNV
Sbjct:    7 RAADRIKELLEAKPGKVGVRLGVKRRGCNGYSYTLNYADEKPAKDE------------------------------EVAEKGVR------------------------VFVDPLATFYIVGTTMDWEETELSSEFTFKNPNAKGSCGCGESFNV 106
[Close]
BLAST of mRNA_A-nodosum_M_contig836.10.1 vs. uniprot
Match: A0A7S2XY71_9STRA (Hypothetical protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XY71_9STRA)

HSP 1 Score: 127 bits (318), Expect = 2.600e-30
Identity = 69/160 (43.12%), Postives = 85/160 (53.12%), Query Frame = 2 
Query:  200 PITLTDRAAAHLTHLMANKPDTIGVRLGVKRRGCNGLSYTLKYADERPKGDEVVIIPAVPTEPKSGPELAVLEAKLVAAGGEEVLEEGARGAGDKGGAAIVEGGLGATTPQSVTLFVDPMATLYIAGTVMDWEETELSSEFTFRNPNAKGECGCGESFNV 679
            PI +T++AA  +  L++ + D IG+RLGVKRRGCNGLSYT+ Y DE PK DE                              EV + G R                        +FV+PMA  ++ GT MD+EETELSSEFTF+NPNAKG CGCGESFN 
Sbjct:   58 PIKITEKAAERIKELLSGQDDKIGIRLGVKRRGCNGLSYTMNYVDEAPKKDE------------------------------EVQDHGVR------------------------VFVEPMALFHVVGTTMDFEETELSSEFTFKNPNAKGSCGCGESFNT 163
[Close]
BLAST of mRNA_A-nodosum_M_contig836.10.1 vs. uniprot
Match: A0A4D9CY95_9STRA (Fe-S_biosyn domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CY95_9STRA)

HSP 1 Score: 125 bits (314), Expect = 1.290e-29
Identity = 72/162 (44.44%), Postives = 88/162 (54.32%), Query Frame = 2 
Query:  197 APITLTDRAAAHLTHLMANK-PDTIGVRLGVKRRGCNGLSYTLKYADERPKGDEVVIIPAVPTEPKSGPELAVLEAKLVAAGGEEVLEEGARGAGDKGGAAIVEGGLGATTPQSVTLFVDPMATLYIAGTVMDWEETELSSEFTFRNPNAKGECGCGESFNV 679
            AP+ LT+RA + +  L+A+K P  IGVRLG KRRGCNGLSYT+ YA+ RPK DE V +                                              GG        VT+FV+P A +++ GT MD+EETELS EFTF NPNAKG+CGCGESFNV
Sbjct:   68 APLQLTERAVSRIKELLASKGPSVIGVRLGTKRRGCNGLSYTMNYAETRPKFDEEVQV----------------------------------------------GG--------VTVFVEPSALMHVVGTEMDYEETELSREFTFNNPNAKGQCGCGESFNV 175
[Close]
BLAST of mRNA_A-nodosum_M_contig836.10.1 vs. uniprot
Match: W7U7I1_9STRA (Iron-sulfur protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U7I1_9STRA)

HSP 1 Score: 125 bits (314), Expect = 1.400e-28
Identity = 72/162 (44.44%), Postives = 88/162 (54.32%), Query Frame = 2 
Query:  197 APITLTDRAAAHLTHLMANK-PDTIGVRLGVKRRGCNGLSYTLKYADERPKGDEVVIIPAVPTEPKSGPELAVLEAKLVAAGGEEVLEEGARGAGDKGGAAIVEGGLGATTPQSVTLFVDPMATLYIAGTVMDWEETELSSEFTFRNPNAKGECGCGESFNV 679
            AP+ LT+RA + +  L+A+K P  IGVRLG KRRGCNGLSYT+ YA+ RPK DE V +                                              GG        VT+FV+P A +++ GT MD+EETELS EFTF NPNAKG+CGCGESFNV
Sbjct:  158 APLQLTERAVSRIKELLASKGPSVIGVRLGTKRRGCNGLSYTMNYAETRPKFDEEVQV----------------------------------------------GG--------VTVFVEPSALMHVVGTEMDYEETELSREFTFNNPNAKGQCGCGESFNV 265
[Close]
BLAST of mRNA_A-nodosum_M_contig836.10.1 vs. uniprot
Match: H3HBE5_PHYRM (Fe-S_biosyn domain-containing protein n=33 Tax=Peronosporaceae TaxID=4777 RepID=H3HBE5_PHYRM)

HSP 1 Score: 120 bits (300), Expect = 4.490e-28
Identity = 67/160 (41.88%), Postives = 83/160 (51.88%), Query Frame = 2 
Query:  200 PITLTDRAAAHLTHLMANKPDTIGVRLGVKRRGCNGLSYTLKYADERPKGDEVVIIPAVPTEPKSGPELAVLEAKLVAAGGEEVLEEGARGAGDKGGAAIVEGGLGATTPQSVTLFVDPMATLYIAGTVMDWEETELSSEFTFRNPNAKGECGCGESFNV 679
            P+ LTD AAA +  L+ANKPD IG+RLGVK RGCNGLSYT+ YAD++ K +E                              EV + G R                        +FV+P A  ++ GT MD++ T +SSEF F NPNAKG CGCGESFNV
Sbjct:   41 PLNLTDAAAARIKELLANKPDAIGIRLGVKTRGCNGLSYTMNYADKKEKMEE------------------------------EVSKNGIR------------------------VFVEPKALFHVVGTTMDFQITPVSSEFVFENPNAKGSCGCGESFNV 146
[Close]
BLAST of mRNA_A-nodosum_M_contig836.10.1 vs. uniprot
Match: A0A7S1BZJ0_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BZJ0_9STRA)

HSP 1 Score: 119 bits (299), Expect = 1.870e-27
Identity = 69/162 (42.59%), Postives = 84/162 (51.85%), Query Frame = 2 
Query:  197 APITLTDRAAAHLTHLMAN-KPDTIGVRLGVKRRGCNGLSYTLKYADERPKGDEVVIIPAVPTEPKSGPELAVLEAKLVAAGGEEVLEEGARGAGDKGGAAIVEGGLGATTPQSVTLFVDPMATLYIAGTVMDWEETELSSEFTFRNPNAKGECGCGESFNV 679
            API +TD AAA +  L+++ + D +G+RLGVKRRGCNGLSYTL YA E P  DE V+                                                     TP  V +FV+P A   I GTVMDWEE  L++EFTF+NPN+KGECGCGESF V
Sbjct:   77 APIVVTDVAAARIRALLSDAEGDPLGIRLGVKRRGCNGLSYTLNYAYEVPPQDEDVV-----------------------------------------------------TPNGVRVFVEPAALFSIVGTVMDWEEDALTAEFTFKNPNSKGECGCGESFTV 185
[Close]
BLAST of mRNA_A-nodosum_M_contig836.10.1 vs. uniprot
Match: A0A1E7EVJ1_9STRA (Fe-S_biosyn domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EVJ1_9STRA)

HSP 1 Score: 119 bits (297), Expect = 5.120e-27
Identity = 70/162 (43.21%), Postives = 85/162 (52.47%), Query Frame = 2 
Query:  200 PITLTDRAAAHLTHLMA--NKPDTIGVRLGVKRRGCNGLSYTLKYADERPKGDEVVIIPAVPTEPKSGPELAVLEAKLVAAGGEEVLEEGARGAGDKGGAAIVEGGLGATTPQSVTLFVDPMATLYIAGTVMDWEETELSSEFTFRNPNAKGECGCGESFNV 679
            PI +T+RAA  +  ++   N   +IG+RLGVKRRGCNGLSYTL YA E+P+ D                                 LE  + G                     VT+FV+PMA   + GTVMDWEE+ELSSEFTF NPN+KGECGCGESF V
Sbjct:   92 PIVVTERAAIRIKEILQGDNAQGSIGIRLGVKRRGCNGLSYTLNYAFEKPEKD---------------------------------LEMDSSG---------------------VTVFVEPMALFSVVGTVMDWEESELSSEFTFTNPNSKGECGCGESFTV 199
[Close]
BLAST of mRNA_A-nodosum_M_contig836.10.1 vs. uniprot
Match: A0A484DVJ7_BRELC (Fe-S_biosyn domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DVJ7_BRELC)

HSP 1 Score: 117 bits (292), Expect = 5.170e-27
Identity = 63/160 (39.38%), Postives = 83/160 (51.88%), Query Frame = 2 
Query:  200 PITLTDRAAAHLTHLMANKPDTIGVRLGVKRRGCNGLSYTLKYADERPKGDEVVIIPAVPTEPKSGPELAVLEAKLVAAGGEEVLEEGARGAGDKGGAAIVEGGLGATTPQSVTLFVDPMATLYIAGTVMDWEETELSSEFTFRNPNAKGECGCGESFNV 679
            P+ +TD AA+ +  L+ANKPD IG+RLGV+ RGCNGLSYT+ YAD++   +E                              EV++ G R                        +FV+P A  ++ GT MD++ T +SSEFTF NPNAK  CGCGESFNV
Sbjct:   39 PLNMTDAAASRIRELLANKPDAIGIRLGVRARGCNGLSYTMNYADKKENMEE------------------------------EVIKNGVR------------------------VFVEPKALFHVVGTTMDFQVTPVSSEFTFENPNAKSSCGCGESFNV 144
[Close]
BLAST of mRNA_A-nodosum_M_contig836.10.1 vs. uniprot
Match: A0A7S2XT99_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XT99_9STRA)

HSP 1 Score: 117 bits (294), Expect = 9.140e-27
Identity = 68/162 (41.98%), Postives = 86/162 (53.09%), Query Frame = 2 
Query:  200 PITLTDRAAAHLTHLMA--NKPDTIGVRLGVKRRGCNGLSYTLKYADERPKGDEVVIIPAVPTEPKSGPELAVLEAKLVAAGGEEVLEEGARGAGDKGGAAIVEGGLGATTPQSVTLFVDPMATLYIAGTVMDWEETELSSEFTFRNPNAKGECGCGESFNV 679
            PI LT+R A  +  +++  N    IG+RLGVKRRGCNGLSYTL YA+E+P+ DE                              E+   G R                        +F++PMA   + GTVMD+EETEL+SEFTF+NPN+KGECGCGESFNV
Sbjct:   79 PIILTERGANRIKAILSGDNAKGAIGIRLGVKRRGCNGLSYTLNYANEKPEQDE------------------------------EMEAHGVR------------------------VFIEPMALFSVVGTVMDYEETELASEFTFQNPNSKGECGCGESFNV 186
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig836.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWL5_ECTSI1.640e-4759.51Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836C8P3_9STRA5.650e-3348.05Fe-S_biosyn domain-containing protein n=1 Tax=Trib... [more]
A0A7S2XY71_9STRA2.600e-3043.13Hypothetical protein n=2 Tax=Fibrocapsa japonica T... [more]
A0A4D9CY95_9STRA1.290e-2944.44Fe-S_biosyn domain-containing protein n=1 Tax=Nann... [more]
W7U7I1_9STRA1.400e-2844.44Iron-sulfur protein n=2 Tax=Nannochloropsis gadita... [more]
H3HBE5_PHYRM4.490e-2841.88Fe-S_biosyn domain-containing protein n=33 Tax=Per... [more]
A0A7S1BZJ0_9STRA1.870e-2742.59Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A1E7EVJ1_9STRA5.120e-2743.21Fe-S_biosyn domain-containing protein n=1 Tax=Frag... [more]
A0A484DVJ7_BRELC5.170e-2739.38Fe-S_biosyn domain-containing protein n=1 Tax=Brem... [more]
A0A7S2XT99_9STRA9.140e-2741.98Hypothetical protein n=1 Tax=Attheya septentrional... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig836contigA-nodosum_M_contig836:206830..217627 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FWL5
Preferred nameISCA1
PFAMsFe-S_biosyn
Model size2020
Max annot lvl2759|Eukaryota
KEGG koko:K22063
Hectar predicted targeting categoryother localisation
GOsGO:0003008,GO:0003674,GO:0003824,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006082,GO:0006725,GO:0006732,GO:0006766,GO:0006767,GO:0006768,GO:0006778,GO:0006779,GO:0006783,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008198,GO:0009058,GO:0009102,GO:0009108,GO:0009110,GO:0009628,GO:0009987,GO:0010467,GO:0016043,GO:0016053,GO:0016226,GO:0016740,GO:0016782,GO:0017144,GO:0018130,GO:0019438,GO:0019538,GO:0019752,GO:0022607,GO:0031163,GO:0031974,GO:0032501,GO:0032787,GO:0033013,GO:0033014,GO:0034641,GO:0036455,GO:0042168,GO:0042364,GO:0042440,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044572,GO:0046148,GO:0046394,GO:0046483,GO:0046872,GO:0046914,GO:0048037,GO:0050886,GO:0050896,GO:0051186,GO:0051188,GO:0051536,GO:0051537,GO:0051540,GO:0051604,GO:0070013,GO:0071000,GO:0071704,GO:0071840,GO:0072330,GO:0097428,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Exons2
Evalue3.7e-53
EggNOG OGsCOG0316@1|root,KOG1120@2759|Eukaryota
Ec32 ortholog descriptionFeS cluster biogenesis
Ec32 orthologEc-11_002370.1
Descriptionprotein maturation by iron-sulfur cluster transfer
Cds size639
COG categoryC
BRITEko00000,ko03029
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870187.0875778-UTR-A-nodosum_M_contig836:206829..2068721680870187.0875778-UTR-A-nodosum_M_contig836:206829..206872Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig836 206830..206872 +
1680870187.1300755-UTR-A-nodosum_M_contig836:216289..2176271680870187.1300755-UTR-A-nodosum_M_contig836:216289..217627Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig836 216290..217627 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870187.1024714-CDS-A-nodosum_M_contig836:206872..2070401680870187.1024714-CDS-A-nodosum_M_contig836:206872..207040Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig836 206873..207040 +
1680870187.1166928-CDS-A-nodosum_M_contig836:215818..2162891680870187.1166928-CDS-A-nodosum_M_contig836:215818..216289Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig836 215819..216289 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig836.10.1prot_A-nodosum_M_contig836.10.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig836 206873..216289 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig836.10.1

>prot_A-nodosum_M_contig836.10.1 ID=prot_A-nodosum_M_contig836.10.1|Name=mRNA_A-nodosum_M_contig836.10.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=213bp
MFPLTRSPLHPATGAPRRRTLASAVALDGEREGEGGGDTQKRRRRPKRDR
PAPITLTDRAAAHLTHLMANKPDTIGVRLGVKRRGCNGLSYTLKYADERP
KGDEVVIIPAVPTEPKSGPELAVLEAKLVAAGGEEVLEEGARGAGDKGGA
AIVEGGLGATTPQSVTLFVDPMATLYIAGTVMDWEETELSSEFTFRNPNA
KGECGCGESFNV*
back to top

mRNA from alignment at A-nodosum_M_contig836:206830..217627+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig836.10.1 ID=mRNA_A-nodosum_M_contig836.10.1|Name=mRNA_A-nodosum_M_contig836.10.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=10798bp|location=Sequence derived from alignment at A-nodosum_M_contig836:206830..217627+ (Ascophyllum nodosum dioecious)
CATCGCCGCCACCACCGCCGTGGCTCGTAAGTTGAACCAAGCAATGTTTC
CGTTGACGAGAAGTCCACTTCACCCTGCGACTGGTGCGCCTCGAAGACGA
ACGCTAGCATCCGCGGTGGCGCTAGACGGGGAACGAGAGGGAGAAGGAGG
AGGCGATACCCAAAAGCGGCGAAGAAGGCCAAAGCGCGACCGACCTGCTC
CCATAACTCTGGTGAGAAATCGGTGATCGGGAAGCCACGTACTTGCGTAA
TACCAACCTATGAACTCAACGATGCCGACGTCCGTCCGGAATCGTTCGAG
TGCCGTTCGTACTGGGTTGCTGTCAAAGTGCTACGAGCACCAGAGTTCCA
AAGTCTGAACGTCTAGATCTATTAATAGACTAGCTTTAGTTCTACAGCAG
TAGTACCACACTAGAGTTGTAGCGGTACAGAGTACGTACTTACTTCTGTT
TACCTCTCTTTTCTATTCATCATACTAAAAAAATGCGGGTTAATTCGTCA
GCACACCTGGTTCCTCCTTGAAATCAAGCAGACATTTCAATATCATAAGC
CCATGTTGTATTTTCGCCTGATAAGCTGTTCACCTGATAAGTTGTTCACC
TGATAAGCTACTACAGTATTTATAGTGGCCAGGACTAAAACAGCGGTAAT
AATTATCAGAAATAAAACTGCGCCTGATTCCTCTTCAATCTCCACCTTCT
TCGATGTCTAGTAATATAGTAAAATTATAGTATTGACCCTATGAGACTAC
TGCCGCCGGTACTTTCAACATGCCCACTTTACCAATAGTGGGTGTGGGAA
AGAGAGGCGCATATTAATTGGTCCATAGTGACCTGCCAAGGCAGCACTCG
TTCGGAACTACCTTGAGGTTTACTGGCCCTGTGGCCGGCGGACTTTCGGC
GGCAGTGAACGCCATCGGTACGCACTTGCGTAACCCGATAAACTCGGGAC
TGACCTGATGGCGTATGGCGGTTTCAAAATTGGACGCCGCCACGGAACTC
GGGAGGAATCCCGTAAGTAAGCACCAGATTCAGCCTGAGTATGGAGATGG
ACAGGCTGACGCGGGACGGGACGGCTGAACCCGTCTCGCGAGACCAAATT
CTCAGGCACGCACGGGGACAGGGGAATATCATTTTTCCCTGTTCAGCTGA
CCATGAGCAGGGTTGGCAATCTTACCCGGTTGATCTATACCGCCGGTACT
TTCAACATGCCCACTTCATACCAATAGTGGGTGTGGGAAAGAGAGGCGAA
TATTAATTGGTCCATGGTGATCTGCCAAGGCAGCACCCGTTCGGAACTGC
CTTGAGGTTTACTGGCCCTGTGCCGGCGGACTCTCGGCAGTGAACGCCAT
CGGTACGCAACTGCGTGACCCGATAACTCGGGACTGACCCGATGGCGTAT
GGCGGTTTCATATGGACGCCGCCGCGGAACTCGGGAGGAATCCCGTAAGT
AAGCACCAGATTCAGCCTGAGTATGGAGATGAGCAGACTGACGCGGGACG
GGACGGCTGAACCCGTCTCGCGAGACCAAATTCTCAGGCACGCACGGGGA
CAGGGGAATGTCCATTTTCCCTGTTCAGCTGACCACGAGCAGGATTGGCA
ACCTTACCCGGTTGATCCATACTCTGCTATATGTGATGACCATACATACA
TACATACATATATGTGATGACCACACGTACATACATACATACTACCACTG
TAATTCATCGTACAATCAAGGTCGATTCGCCAATAGCGTCGTTCGACGTT
CTTGCACACTGCCAAAACCAAACTCGTATCCTACCTCGCCGGTCATCACT
CGCTGCACGTCACAGTGTTGAAGCAACCAAGCTAGTACCTAGTGGTATCG
GTCCCGAGCACAGCAAGGACGCTGATTTCTTCTGAGATCTATTCAAAGAA
AAATCAGAACGCGCCTAGACGTTCTGAGCATCCCCCAGTCAGGGGGGGGG
AAATGTCAAAACGTTTAGGTGGGATCAAAGGCTGCAAATGCAAAACCTCT
TCGTGGCATTTAAACAGGTTCCCCGATGGAAATGACATTGGGCCAACAGT
ATAATGTCGGGGAGAAGCCCATCGTTTTGCTGTACACTTACATTAATCGC
CATACATGGACACCAGAAAAACAGTAAAAACAAAACAGAGACAATGCAGT
ACTCCATCAAACATGGTGGTACATACAAAGCCACTACATGGTATTTAACC
GGGTTCCCCAATGGTAGTAACCTTGGGTCAACAGCATAATGTCGGGGAGA
AACCCACCGTTATACTGTACACTTATATTAATCACCATGCAGAGCCACCA
ATCGTAACATGACATAAACACTGTAGTACTTAGTTAAGAGGATAGTACTA
ATGTCGATATTAGTACTATCGAACCATACAAGAACAAGAATAGGGGCTTG
GGTGAACAAGAAAATGTCGGGGAGAAATCCACTGGTATCCTGTACAATTC
CATTAATCGCCATGCAGGGATATCACACACAAACAGACGACACGGGAAGC
TTGGATTACAACTCAATTTCCCAACTTCCGATGTTTCACAGCTCGTCCCC
TTCCTCTTCCTCCGGCCCGTCCAAGAGCTGTACATCTCTACATCGCTGTC
GCTTTCCCCCCCCACCGCTGGAAGACAAAGGCAACAACTTGGCCTCTATT
GATATTGATAGCTCCTTCCCCTTCTCTGCAGCAACCGTGATGAAGTGAAG
TTGGTGCCGAGAGGTCGCCCTCGGATGCCGCTGGTACCAGCACTGGTAGC
TTGCCTGCTGGGAATATATCCCTTTGCCTTCGAGCTTTCTTCTTGGGTCA
TGTGTTTCATAATACCTGTGCCTCTCTCGTTTTTGTCTTCCGTAGCGAGT
ATGGTACGTAGTACCATTATATAGGTACTGTACCTAATCTGTATCGTTAG
GTTGTAGGTTGCGGCACGTGTGTTTTTTCTGTGTGCTTGGCTGAGTGGAT
ACCGTTTACCGATTCAATGGAAATAACTTTCCCATTGCTACGTGTGCACC
GGCACCGTGCCATACATACAGCAGCAGCAGTGGAGTCCCCATGATAAATA
CCGCGATGTTAAAGCACTGCGACAAACCGTTGCAGCTCAGTAAGTCTCCC
CGGAACTCGCGATAGCACGCAACCTCGCGCCCGAAGTGGCGTTTTCCCCA
GCGATAACTCCGATACCTGTGCGAAAATCGAATCAAATCATTTCGTTCTC
GCTTTTTTATCGCACCCCTGTGCGATAACTCGCAAACTTACGGTACAGTA
CTTCAACGCGATCTCAAAACCCTATTTAACATAACTGCGTTATTTCCAGG
TTCATCGTGTGGTTTTGCCTCTGTTTCGATGCGCGTGCATGGCGATTGAT
GTAAGTGTACAGTTCTTGTTGATTCACACGTTCATCGTTTTGTTTGTCCT
TGCAACTGAAGAAACTATCATACGGTGACGCAACAAGTCAGCCATAGACC
TGTCAAATGTCAATCCCGCTGGTGGTCACAAAGAGGTACGAAGGTCAACG
GGTCACATCATGGTGACAACCCGCTACTCAAACCAACAGGGATTGTATAA
CTGTGGGTTTATCCCCGATACCATTCTGTTGACCCTATTCTATAACCATT
GGGGAAGTCGACTAGATCCCGTCAGAGTTTTTGTCCCTGCAGCGTATTTT
CACACCTAAACGTTTTGACTATTTCCCCCCCCTGACTAGGTAGATGCTCT
ATTACTGTATATTGATTATTACATTTATATTAATATAAGTTTAAGATCCG
TCCAGATTTTTCTTTGTGAAGTACCCCGTACGTACGGAGTATTAATAGTA
CATGTCGATGAAGAATCATCAGGGCCTTCGACGTTATTGTAAGGAACCTC
TTGTTAGCGTACGTAGCGATCTCGCAGGGCATGGTAGTGCGGCGGTTGGT
TGGAAGTCACAAATTATTGTATAGTAGCAGTTTGGATACGATACCGGCGG
CTGGTGAGTATATAATAGCTTCACCAGGTACTATACAGAGAAAAGCATAA
TTTATTTTGTTTCGGAAAATATCAAGCATTATTGCACTACAAGTACAGTA
TAATAGATAGCTCCCTGCTATCCAACCTGGTGGTGTCGAACTATAGTATA
AATGGTTCGTTACATACATACCTCTAGTAGATCTACTAAATGTTACCCTC
CTCAAACTTATTTCGATGCGTTTTTTTTTTTTTTTTTGGCAGGAGCCTTC
CCGGTAAGGGTTTCCATTGCGATATACTGTAACAACAAATGATTTGATGC
GGTGGGGTTTGAGGTAATCACGGATACCGATCTGGTATCGTTTTCGGTTT
TAGCCTAAAAGTCTGCGGCACAAGCGGTGAGGTTCGAAGCAATCTCGGAT
ACAGTACACGCGACACGTATAAATAGCTTCGAGCATCGCTGATATCGGTT
GGCACGCTGTCAGGGAAGGAAGGTTTCATAGCTCTTGCTATCATAGATTA
ATAGTAGCAGCATGTTCTTCGTTTCATCAGCTGTAGAGCGCAGGAGTTGA
TACGAAGTTCACGTCTTTTAGGGATTGATCAAAGAAGCTGGGGTAGTCTG
TTTATAACAAATCTTCACGGCGTCTGTTCGACCATATCCTGTACTTTAGC
ATTAACCTGATCCGCGCGATGAGAACCCGCCACCTGTACCCACATTGCCG
GAGTGGTCGTGCAGACGTTTCATTTATCCGTCCTCTAGTATGTATGCCCT
AGAGCTACACCTACCATCGCAGGTTCACTAAAATATTTTATAATTAGGCG
AGATTGACCGTAAAAGTCTCGCCGGTTGTTGCTCTCTTCTGTTATGTACA
AGAACTCATCAACGTCCGACATCCATTATATCCATTTGATTTCTCACGGG
TCTCTGCTGCTCATCGATCATGGGGTCGTAGTGTCTTAATCTACCCAATG
TATTATCTTAATGTATGCCACCTTTATGCCATGTTCACCGCATGTTTGCA
AGAAAAAAAGCCGGAGCGGAAACGTTTGGACCCAAAATTCAAGAAATTTG
AACGCCTCCGAAAGGGTTTCCAATTTAAATCTGCGATTTTTTTAGCTTCT
ACACATTTTTTTTTGGATGTTAAATGGTATACCGGGTTGAACCTTATCGG
GTTACCGCAGTTATTATTACTATAACCAGTAGTAACCGTGAAAACACCCC
TGGGCCTTTTTCTGTGCGAAGTACTTGTAGCTCTTCGCCTATTAATAGTT
ATATAAATCCTTCATTTTTCTTCCTGTTGAAACCTTTGGATCTAGTGTAC
TTCCCCCGGTCGGTGCGGATGCTGGGGAGGTTCAATGTTTTCTACTTCGA
TAGAGCTAGGCCACGAGCAAGACGGGTCTTAGTAATCGGTCCAATCTGGC
CAATCGGCATCATGTGATAACATTAACCCTTTCAGAACTCGTGTGCAATT
TTTGTATGGATTTTTTAATAGAAAAAACAGACCGGGTACCAAGAGGGTTA
ATATTAATAGCAACAACAAGAAGAGGTTTTGTCTTTGCAGCCTATGATCC
CACCTAAACGTTTTGACATTTTTCCCCCTGACTGGGGGATGCTCGGAAGG
TTTAGATGCGTTCAGATTTTTCTTTAAGCAACGCACCTCGATTCACTCTT
CATATCATAACAAACGATGAGCAGAGCTGAAGGATTCAGGTGGACAACAG
CAATTTTTGCATCTTGGCGACAAGTCCACCGCAGCTACCAGAACCGAGTA
CGGCCGCGCTAGTTTTACTACTATGAACACTAGTATAGTTTTATTATGTA
ATAATTCAAACAAGATTAGCAATGATCAGTATTGTTTAGGATTGACAAGG
ATCGAAAGACACGCTCAGACCGAGCATACACGCGGACAGAGTACGAATCC
CCGCTTGGGAAGCCCAATACGGTTACTAATTATTAATCGTTAATTGCAGG
TAGAATTAATATTAATATTTTATAGCTATACAGGGCCGAACACATACACA
AAACGTTCTCGTGGCAACAATCATTGATCCATTGATTCCCCTCGGGAGGG
GTCGCGAAAGGGCCGGGCTTCGCGGTTATGCACACATCGCTCATTGGCGC
GAGCAAATCCGAGTAGCTTCGGTTGCTTCCCACAACGGGACCAGATAGCT
ATACAGGGCCGAACACATACACAAAACGTTCTCGTGGCAACAATCATTGC
TCATTGGCGCGAGCAAATCCGAGTAGCTTCGGTTGCTTCCCACAACGGGA
CCAGATTGCGCGGTTACTTACAAAATAGTAAATACTACACCCGTAAGGAG
TATCATTGATCCTATCCCCCATTGGCAGGACCAATGCGAGTATGTATGTA
TGTTTGTATGGTCATCACATATAGCAGAGTATGGATCAACCGGGTAAGGT
TGCCAGTCCTGCTCGTGGTCAGCTGAACAGGGGAAACTAATATTTCCCTG
TCCCCGTGCGTGCCTGAGAATTTTGTCCCGCGAGACGGGTTCAGCCGTCC
CGTCCCGCGTCAGCCTGCTCATCTCCATACTCAGGCTGAATCTGGTAATT
ACTTACGGGATTCCTCCCGAGTTCCGCGGCGGCGTCCATTTATTCATTTA
CAACCACCATACGCCATCGGGTCAGTCCCCAGTTTATCGGGTCAGTCCCC
AGTTTATCGGGTCACGCAAATGCGTACCGATGGCGTTCACTGCCGAGAGT
CCGCCGGCACAGGGCCAGTAAACGAGTGGCATAGAATGGCTGGCAGGACA
GGGCAGGATTGCGACACACACACACACACACACACACCCCTTTGTCGCGT
TTGATCAGAGGTTTTCGTAACAAGTATCATTGATCTCCCCTTGGGAGGAT
CATGCGAGTGGCATAGAATGACTAGGATGACAAGGCCGGATTGCGCGGTT
ATGTGCAATTTAATAAATACACACACACACACACACACACAGGGTGACAT
GAGCGGATTGCGCGTTTATGTGCAATTCAATAAATACACACACACACTTA
TGATCGGGGGGAGCGATGCGAGGCGCTTAGAATAAAGGGCCACTTCAATA
TAAAGACACGCACATAAATTCCCCAAGTTGTATTTTTCAGCTAAATATGA
CCAAAACAGCTTTTAAGGGGGCGTTGGAAGCGATTCGTGCGTCTTTTAAG
ATTAAGTAATTATGTAAGGCTTTTGGAACCACGGTGTGGTGGACATCGAA
CTATCACTACTACTTGGTTTCAAGACACCTTTGGGCATTATTCCTTTCTT
GGTCTCTTGATACATTATTCCTTTCATGTTCTGTTGATACATTATTCCTT
TCATGGTCTGTTCAACATGTTGATGGTATGCTGTGTTATGCTTCGAAGGA
TTGCTCAAAACGAATAATCACAACCGTCAGCTACAGGTATCTATCTCTTG
AGCACGAGTCACCACCCTTCGCCTCACAGTACAGCCCTTGCGCCCCTTGG
TGTTGTATGATATTGATACGATAGAAGTCATAGTCCTATTTCAACATGCC
CACTTCATACCTATTTAATTATGTGCTACGTTGTTTCTGTTTTGTTTTTG
ATGTCTGTATGGTGTCCCTGCATGGCGATTAATGTAAGTGTACAATATAA
CGGTGGGCTTCTCCCCGACATTATACTGTTGACCCAATGTTACTACCATC
GGGGAACCCGTTTAAATGCCATGAAGAGGTTTTGTATTTGCAGCCTATGA
TCCCACCTAAACGTTTTGACATTTTTCCCCCTTGACTGGGCGGCGCGTTC
TGATTTTTCGAGTCAGCCATAGACCTTTGGGAGATAATCGGGGTGTCTAG
TCTTTTGCCGATATTAGCGTCCGCAGAGCTAGACTATTGCTCTATAGCTG
CTTTATTTTGTTTTATAGCTTTATAGCTCTATGTGCCGTGAAGGAACCTT
TTCCTGCCTTTTTTAGCGAAATATTTTTCCTCTCCAGCGGTAGTTTCGCG
GGGATTTTCTTCTCTTTTTTTTTGCCTTTTTTCCTGCCTTTTCTTTAACT
TTCTTAAAAATCCTCTCGTAACTACCTGGTACTTGACTATTAATAGTCTA
TTACAAAAATCAAACTGCGAGTTTTGTGTGCGAGAGTCTCGCAAGGTTTT
CGTTGGGCGTGTTTAATGATGAATATTTCTACTTTCCATTGAACTTATTC
ACGCAGCCGATGGGCTTCGCTGTAGTTGTGCAACAGCAGTTTGGAAACCA
ATCGCCTCGAAGTCCATGACCGAAAAAGCTCTACTTGTGTGTGCAGTATC
AACAAAAACTGTAACGGTATATAATAGTGTGTGTCGATTTGCTCTTCTGA
GAAGCTTACCCCGCCAGTCTTGTTCGCGGCGAGATTTTTACCGGTACACC
ATATCCGAGATAGATAAGTAGATACCGTACCTGTACGAGTAGCTAGCTAT
TAATATTAGTAATAGCTGTATCCAAGCTCATCCTGCCTCTTGTTTCGTTT
TGCTTGGTGTCCTTGCATGGCGATTAATGTAAGTTTACAGGATAACGGTG
GGTTTTTCCCCGACAGGATACTGTTGATCCCACGAAGAAGTTTTGTCTTT
TGATCCCATCTAAACGTTTCGACAGTTTTTCCCCCTGAACGGGGGATGCT
AAGAACGTCCTAGATGCGTTCAGATTCTTCTTTAAATATAGTACGTCCCC
GAAAAAAGCTCTTGTTCGAAAAAAAGCCACAGGACGCAGTTTTGCTATAA
TGTACCAGTACCAGTATATTAACAGTAGCCGAGGAAGTGCGCAGCACCCG
TGCTTGGTATAGGAATGGCGCTGGGTGGCACCGGCCAAGGCCTCCCGCTC
CCTTCCGACCGCTCTGTCGCTATATTGTACCATAGTACCATCGGAGCGAT
CCCTAGACTTCATTGAGTCGATGCATTATACATTTATATAGTAGTATCAT
TGGCATCACACGGATGGGTGCCCATTTTATTTCGCCTCTAATTCCATTCC
GCGCCTAACTTTTCTCATCCTTCCCCTTACCCTTCTCCTTCCCCCTTCCC
TGTCTTGTCGCGCTAACGGTATGACGTGCTCGATCGAAGACGGATCGAGC
CGCGGCCCACTTGACCCACCTCATGGCGAACAAGCCGGACACGATCGGGG
TGAGGCTCGGCGTCAAGCGGCGAGGCTGCAACGGGCTGTCGTACACCCTC
AAGTACGCGGACGAGAGACCCAAGGGCGACGAGGTCGTGATCATCCCGGC
GGTGCCGACAGAACCGAAATCAGGGCCAGAGTTGGCGGTTCTGGAGGCGA
AACTTGTCGCCGCGGGGGGGGAAGAAGTTCTCGAGGAGGGAGCGCGAGGA
GCGGGAGACAAAGGTGGAGCAGCGATCGTTGAGGGGGGCTTGGGTGCGAC
CACGCCCCAGAGCGTGACGCTGTTCGTGGACCCGATGGCGACGCTCTACA
TCGCCGGGACGGTCATGGACTGGGAGGAGACAGAGCTCTCCTCGGAGTTC
ACGTTCCGCAATCCGAACGCCAAGGGGGAGTGCGGCTGCGGCGAGAGCTT
CAACGTGTAGTTTCTGAAGTGTGTCCTGGCATGGCATGGCGGGAAATGCC
CCCCGTGTGTTTGTATTTGTTTTTGTAGTTGTCTTTTTTGTAGGTAGGTG
CTGACCAACTAGTGGTTTGTTTGTCTCTCATCGCTGGGCCTTTTTTTGGG
GGGGGGGGAGGAGGGTCCATTACAGAGTGTACGCGATGGCAAAAAAGGAT
GGCGAAAAAAGAGGCCCGCAGCAATGAAAAACTTGAGAAAATGCGCAATA
ATTGTGCGCGGACCACCTTTTCTGTCCTTCCGCTTCCCGAACATCAAAAT
ACGCTACTACTGTATGTATACGTGAAATATCTACCACCAGGTAGCAGGCA
CTGTAATAGCGATAATATGGAGAGCTCGGCGGCTTTGGCGTCGTGAACAG
CGTTGTACCGTTTGAGAAGATGTCTAAATAGTCTAGAGCTCTAGATATGT
TGGACCTCGGTATACAGTGTATAGTATATTATAGTATAGTACGGCAGCAC
GGTTTTGCTTCGTGAACCGGACCATTTCGGAAGACAAAGAATCGCTCTGA
ACGCTCTATAGATAGCGTGCGGCTTCGGGGCTAGGCATCATGCTGAAGAA
GTTATTTGCCTCTTTGGGGTTTTCGGGAGGGGGATGGGGGGGAGGAAACC
GTCATGCATTTTTTTCGCTCGCCCTCGTTTGCGGGTGCTTCTCCTCAGCA
GTGCCCAAAATATATTTTTAGGGCGGGCGTGGTACCGCCGTGGTATTTTT
CCATTTTGGGGTACCGAAGAAGTTGATTTGGACATACAATCACCCCGAGG
CTTCCACCTTTTTTTATCGACGTTTCACGTTTCTCTCCTGGTGAAGAGTT
TGATGGTCGAAGGTGGTCGATCCTTGAGAACGGTATATTCCAAGATGCAC
TTAATTAAACATGTGACTGGTTGTACGTCACGTAAGGGCGAAGGGCAAAC
AGTCTGTTTTAACGTCATAACCCGGTAGGAGAGGTATTGTGCGCTCAGAT
CATGTAGTATTCAGATTGGACATATATGTATATATATATATGTGTGTACG
CTTCATGTGCTGTACGCGTGTATGGATGTATGGATTTATGCTTACATGAC
CGGAGCTCGTTGAAGGGGCTGCTCACTTCGCGCACAGAACAGGCGCGGCG
CAGTACAAGCAAAGCGTATAGTATAAAGTAGTAATAATGCAGTAAAACTA
ATGGGGGCCGCATAAAGCGAAAACGCGAGGTGACGGCATTTGTGTGACAC
TCACACACAACACTACTACCCGTAGTAAAAACAGAGGTTTTGTATTTGCA
GCCTTTGATCCCACCTAAACGTTTTGACATTTTTCCCCCATAACCGGG
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig836:206830..217627+

>mRNA_A-nodosum_M_contig836.10.1 ID=mRNA_A-nodosum_M_contig836.10.1|Name=mRNA_A-nodosum_M_contig836.10.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=639bp|location=Sequence derived from alignment at A-nodosum_M_contig836:206830..217627+ (Ascophyllum nodosum dioecious)
ATGTTTCCGTTGACGAGAAGTCCACTTCACCCTGCGACTGGTGCGCCTCG
AAGACGAACGCTAGCATCCGCGGTGGCGCTAGACGGGGAACGAGAGGGAG
AAGGAGGAGGCGATACCCAAAAGCGGCGAAGAAGGCCAAAGCGCGACCGA
CCTGCTCCCATAACTCTGACGGATCGAGCCGCGGCCCACTTGACCCACCT
CATGGCGAACAAGCCGGACACGATCGGGGTGAGGCTCGGCGTCAAGCGGC
GAGGCTGCAACGGGCTGTCGTACACCCTCAAGTACGCGGACGAGAGACCC
AAGGGCGACGAGGTCGTGATCATCCCGGCGGTGCCGACAGAACCGAAATC
AGGGCCAGAGTTGGCGGTTCTGGAGGCGAAACTTGTCGCCGCGGGGGGGG
AAGAAGTTCTCGAGGAGGGAGCGCGAGGAGCGGGAGACAAAGGTGGAGCA
GCGATCGTTGAGGGGGGCTTGGGTGCGACCACGCCCCAGAGCGTGACGCT
GTTCGTGGACCCGATGGCGACGCTCTACATCGCCGGGACGGTCATGGACT
GGGAGGAGACAGAGCTCTCCTCGGAGTTCACGTTCCGCAATCCGAACGCC
AAGGGGGAGTGCGGCTGCGGCGAGAGCTTCAACGTGTAG
back to top