mRNA_A-nodosum_M_contig8356.4.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig8356.4.1
Unique NamemRNA_A-nodosum_M_contig8356.4.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig8356.4.1 vs. uniprot
Match: D7FLB1_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLB1_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 2.120e-17
Identity = 44/85 (51.76%), Postives = 60/85 (70.59%), Query Frame = 1 
Query:  205 ERGWDIFTELILDEVKTAGNPLTPGMAVSVALAEAAKGASEAEQRMLVSFQKRVDTFVLKILERLPQTVRGFENGMSQCSALFEP 459
            ER  +      L+ V  + NP  PGM +S+A A++A  A E E+R L+S Q+RVDT +L+ILERLPQTV+GF+ GM+ CSA+FEP
Sbjct:  555 ERSAEWLRTCFLETVACSDNPFVPGMTLSIAFAKSASVAPEGERRKLLSLQERVDTLLLEILERLPQTVQGFDGGMTGCSAVFEP 639
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BLAST of mRNA_A-nodosum_M_contig8356.4.1 vs. uniprot
Match: A0A6H5KBU4_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU4_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 2.630e-14
Identity = 46/115 (40.00%), Postives = 65/115 (56.52%), Query Frame = 1 
Query:  121 ILSMLFKHSAYPPSSFFERIAHYVTGADERGWDIFTELILDEVKTAGNPLTPGMAVSVALAEAAKGASEAEQRMLVSFQKRVDTFVLKILERLPQTVRGFEN--GMSQCSALFEP 459
            +L  L  +SA P +S  + ++      D     IF    L  V +A NP  PG+ +S+ L+EAAK ASE E+R L   +  +D  +L++ ERLPQTVRGFE   GM  C+ + EP
Sbjct:  510 MLFSLIANSARPSASALKELSRKAASGD-----IFKRCCLRAVTSAANPFVPGVTLSIRLSEAAKQASEGERRALFDTKSSIDELLLEMFERLPQTVRGFEEQAGMDSCTNVLEP 619
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BLAST of mRNA_A-nodosum_M_contig8356.4.1 vs. uniprot
Match: D7G6K7_ECTSI (Transient Receptor Potential Channel. C terminally truncated n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6K7_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 2.060e-13
Identity = 53/143 (37.06%), Postives = 74/143 (51.75%), Query Frame = 1 
Query:   34 LDASFLSWAERYKTARREQDEAKVNQCKAILSMLFKHSAYPPSSFFERIAHYVTGADERGWDIFTELILDEVKTAGNPLTPGMAVSVALAEAAKGASEAEQRMLVSFQKRVDTFVLKILERLPQTVRGF-ENGMSQCSALFEP 459
            LDA F +  E    A  E  +   N     LS L   SA P +S  ++++ +      +  D F    L  V TA NP  PG+ +S+ LAEAAK A+E EQR +   +  V+  +L+I ERLP+TVR F E     C+ +FEP
Sbjct:  135 LDALFEACVEDLLNAHPEDVDIGFN----TLSFLMASSARPSASDLKKLSKH-----HKSRDGFKNCCLRAVTTAANPFMPGLLLSIRLAEAAKEANEGEQRHIDEIRASVEALLLEIFERLPRTVRAFDEETKGGCTGMFEP 268
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BLAST of mRNA_A-nodosum_M_contig8356.4.1 vs. uniprot
Match: D7FZR6_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZR6_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 1.060e-12
Identity = 44/115 (38.26%), Postives = 63/115 (54.78%), Query Frame = 1 
Query:  121 ILSMLFKHSAYPPSSFFERIAHYVTGADERGWDIFTELILDEVKTAGNPLTPGMAVSVALAEAAKGASEAEQRMLVSFQKRVDTFVLKILERLPQTVRGFEN--GMSQCSALFEP 459
            +L  L  +SA P +S  + ++      D     +F    L  V +A NP  PG+ +S+ L EAAK ASE E+R L   +  +D  +L++ ERLPQTVRGFE   G   C+ + EP
Sbjct:  493 MLFSLIANSARPSASELKGLSRKAASGD-----VFKRCCLRAVTSAANPFIPGVTLSIRLTEAAKQASEGERRALFETKSSIDEMLLEMFERLPQTVRGFEEQAGTDSCTNVLEP 602
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BLAST of mRNA_A-nodosum_M_contig8356.4.1 vs. uniprot
Match: A0A6H5JCX0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCX0_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 3.020e-7
Identity = 32/71 (45.07%), Postives = 41/71 (57.75%), Query Frame = 1 
Query:  247 VKTAGNPLTPGMAVSVALAEAAKGASEAEQRMLVSFQKRVDTFVLKILERLPQTVRGFENGMSQCSALFEP 459
            V  + N    GM +SVA  +  K A E E+  L + Q  V   +L+ILERLPQTV GF  GM+ CSA+  P
Sbjct:   56 VAASDNLFISGMTLSVARVDVTKKAPEGERGTLEAIQGHVHALLLEILERLPQTVNGFNGGMADCSAVLGP 126
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8356.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FLB1_ECTSI2.120e-1751.76Ankyrin Repeat Transient Receptor Potential Channe... [more]
A0A6H5KBU4_9PHAE2.630e-1440.00Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
D7G6K7_ECTSI2.060e-1337.06Transient Receptor Potential Channel. C terminally... [more]
D7FZR6_ECTSI1.060e-1238.26Ankyrin Repeat Transient Receptor Potential Channe... [more]
A0A6H5JCX0_9PHAE3.020e-745.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8356contigA-nodosum_M_contig8356:17509..17967 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FLB1
PFAMsIon_trans
Model size461
Max annot lvl2759|Eukaryota
KEGG koko:K04981
KEGG TC1.A.4.5.8
KEGG Pathwayko04978,map04978
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.48e-18
EggNOG OGsKOG3614@1|root,KOG3614@2759|Eukaryota
EC2.7.11.1
Descriptionion channel activity
Cds size459
COG categoryS
BRITEko00000,ko00001,ko01000,ko01001,ko04040
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870186.4726286-CDS-A-nodosum_M_contig8356:17508..179671680870186.4726286-CDS-A-nodosum_M_contig8356:17508..17967Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8356 17509..17967 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8356.4.1prot_A-nodosum_M_contig8356.4.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig8356 17509..17967 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig8356.4.1

>prot_A-nodosum_M_contig8356.4.1 ID=prot_A-nodosum_M_contig8356.4.1|Name=mRNA_A-nodosum_M_contig8356.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=153bp
MSITRKNVEEALDASFLSWAERYKTARREQDEAKVNQCKAILSMLFKHSA
YPPSSFFERIAHYVTGADERGWDIFTELILDEVKTAGNPLTPGMAVSVAL
AEAAKGASEAEQRMLVSFQKRVDTFVLKILERLPQTVRGFENGMSQCSAL
FEP
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mRNA from alignment at A-nodosum_M_contig8356:17509..17967-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig8356.4.1 ID=mRNA_A-nodosum_M_contig8356.4.1|Name=mRNA_A-nodosum_M_contig8356.4.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=459bp|location=Sequence derived from alignment at A-nodosum_M_contig8356:17509..17967- (Ascophyllum nodosum dioecious)
ATGTCCATCACACGGAAAAATGTTGAAGAGGCATTGGATGCTTCATTCCT
GTCGTGGGCAGAGCGCTATAAAACGGCCCGTCGAGAACAGGATGAAGCGA
AAGTCAACCAATGTAAGGCGATCTTGTCGATGCTTTTCAAGCATTCGGCT
TACCCGCCGAGCAGTTTTTTCGAGAGGATCGCTCACTATGTAACTGGTGC
CGACGAACGAGGGTGGGATATTTTCACGGAACTAATTCTGGATGAGGTGA
AGACCGCCGGAAACCCGTTGACCCCCGGCATGGCTGTTTCGGTGGCACTC
GCCGAAGCTGCAAAAGGGGCAAGCGAAGCGGAACAGAGGATGTTGGTATC
CTTCCAGAAGAGAGTGGATACGTTTGTTCTGAAGATTCTCGAGCGGCTAC
CTCAGACAGTCCGAGGATTCGAAAACGGAATGAGTCAATGTTCCGCCTTG
TTCGAGCCA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig8356:17509..17967-

>mRNA_A-nodosum_M_contig8356.4.1 ID=mRNA_A-nodosum_M_contig8356.4.1|Name=mRNA_A-nodosum_M_contig8356.4.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=459bp|location=Sequence derived from alignment at A-nodosum_M_contig8356:17509..17967- (Ascophyllum nodosum dioecious)
ATGTCCATCACACGGAAAAATGTTGAAGAGGCATTGGATGCTTCATTCCT
GTCGTGGGCAGAGCGCTATAAAACGGCCCGTCGAGAACAGGATGAAGCGA
AAGTCAACCAATGTAAGGCGATCTTGTCGATGCTTTTCAAGCATTCGGCT
TACCCGCCGAGCAGTTTTTTCGAGAGGATCGCTCACTATGTAACTGGTGC
CGACGAACGAGGGTGGGATATTTTCACGGAACTAATTCTGGATGAGGTGA
AGACCGCCGGAAACCCGTTGACCCCCGGCATGGCTGTTTCGGTGGCACTC
GCCGAAGCTGCAAAAGGGGCAAGCGAAGCGGAACAGAGGATGTTGGTATC
CTTCCAGAAGAGAGTGGATACGTTTGTTCTGAAGATTCTCGAGCGGCTAC
CTCAGACAGTCCGAGGATTCGAAAACGGAATGAGTCAATGTTCCGCCTTG
TTCGAGCCA
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