mRNA_A-nodosum_M_contig8351.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig8351.2.1
Unique NamemRNA_A-nodosum_M_contig8351.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8351.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8351contigA-nodosum_M_contig8351:1695..5659 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size3733
Hectar predicted targeting categoryother localisation
Exons2
Cds size2757
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870186.2444885-UTR-A-nodosum_M_contig8351:1694..17851680870186.2444885-UTR-A-nodosum_M_contig8351:1694..1785Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig8351 1695..1785 +
1680870186.2735488-UTR-A-nodosum_M_contig8351:4542..45461680870186.2735488-UTR-A-nodosum_M_contig8351:4542..4546Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig8351 4543..4546 +
1680870186.2842646-UTR-A-nodosum_M_contig8351:4778..56591680870186.2842646-UTR-A-nodosum_M_contig8351:4778..5659Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig8351 4779..5659 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870186.2629213-CDS-A-nodosum_M_contig8351:1785..45421680870186.2629213-CDS-A-nodosum_M_contig8351:1785..4542Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8351 1786..4542 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8351.2.1prot_A-nodosum_M_contig8351.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig8351 1786..4542 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig8351.2.1

>prot_A-nodosum_M_contig8351.2.1 ID=prot_A-nodosum_M_contig8351.2.1|Name=mRNA_A-nodosum_M_contig8351.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=919bp
MHKKAFSAKHAPDGMVDIMGRKHCRTEGCGKPPSFEVDGTKAAKNCAQHA
QNAMIDVKNRTSRTERGGKGPFFGVAGTRTAKHCAQHPTVGRKSRTEGCR
KQPSFGLAGKKTAEYCAEHAPNGMVYVTTRKKCRTEGCRRIPSFSVAGTR
TATYCAQHAQNEMVNVNDRKCRQGDCGKGPSFGMAGTKTAEYCAQHAPGG
MVDVKGRKTCRTECCRKQPSFGVAGTRTAKYCAQHAPDGMVCVITRKCKT
EGCRKQPSFGVAGTRTTEFCRQHASDLMVDVRNRKCRTEGCGKGPSFGLA
DTKMAEYCAQHAPDGMVDVITRKCRTEGCRKRPSFGVIGTRRREYCRQHA
PDGMVNVRRTRKCQTEGCNKHASFGVTGTRTAEYCVQHVPDGMVCVITRK
CKTEGCRKQPSFGVAGTRTTEFCRQHASDLMVNVRIRKCRTEDCGKRSSF
GLAGTRTAEYCAQHAQDGMVDVSTNMCRTEGCNKHASFGVTGTKTVEYCG
KHAPDGMVNVKNRKCRTEGCGKIPSFGMAGTKTAEYCVQHARDGMVGVKG
RKCRTEGCSKQPSFGVTGTKTAEYCGQHVPDGMVNIKSRKCRTEDCRKGP
SFGMAGTKTADYCAQHAQDGMVAVRNRKKCITEGCRKQPSFGVAGTRTTE
YCAQHAPDGMVSVLTRKCKTEDCGKRSSFGLAGTKAAEYCAQHAPDGMVN
VMTRKCRAKGCRKWPLFGMTGTRTAEYCAQHALDGMVDVITRECRAENWG
KGASVGFTGTRTTEYYAQDMDGMDNVNNKCAHPGCNTHALFGATGTRETK
YCAQHARPRCGVKEYMRREIGPYHSGKEPFGDACPRGVKRKIINPVSAQT
SPPSGVSGGSLKRLRHVYTTFTASKQAASTRAVAQDLGAVAVAMPEIVWQ
TSPIKRDSSLKTEVQLSL*
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mRNA from alignment at A-nodosum_M_contig8351:1695..5659+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig8351.2.1 ID=mRNA_A-nodosum_M_contig8351.2.1|Name=mRNA_A-nodosum_M_contig8351.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3965bp|location=Sequence derived from alignment at A-nodosum_M_contig8351:1695..5659+ (Ascophyllum nodosum dioecious)
GGAACACGCCAAAGACAAGAAGTTCAACTTCCCAGCAGCGGAATGTGAAA
AGGTAAAGTCTGATATACGTCTCCGCCGTCCGTAGTATTGAATGCACAAA
AAGGCATTCTCCGCAAAGCACGCCCCGGATGGGATGGTCGACATCATGGG
CAGAAAGCATTGCAGAACCGAAGGCTGCGGCAAGCCTCCGTCGTTCGAAG
TGGACGGGACAAAAGCGGCGAAAAACTGTGCCCAGCACGCCCAGAACGCG
ATGATAGACGTCAAGAACAGAACAAGCAGAACTGAAAGAGGTGGCAAGGG
GCCGTTTTTCGGGGTAGCCGGGACAAGAACGGCGAAGCACTGTGCACAGC
ACCCCACAGTTGGCAGAAAGAGCAGAACCGAAGGCTGCAGGAAGCAGCCG
TCGTTTGGATTGGCCGGGAAAAAAACGGCGGAGTACTGTGCAGAGCACGC
CCCGAATGGAATGGTCTACGTCACAACCAGAAAGAAGTGTCGGACCGAAG
GCTGTCGCAGGATTCCGTCATTCAGTGTAGCCGGGACAAGAACGGCGACG
TACTGTGCCCAGCACGCCCAGAACGAGATGGTCAACGTCAATGACAGAAA
GTGCAGGCAAGGAGACTGCGGGAAGGGGCCGTCGTTCGGAATGGCCGGGA
CAAAAACGGCGGAGTACTGTGCACAACACGCTCCGGGGGGGATGGTCGAC
GTCAAGGGCAGAAAGACGTGTAGAACCGAATGCTGCAGGAAGCAGCCGTC
GTTTGGAGTGGCCGGTACAAGAACGGCGAAGTACTGTGCACAGCATGCTC
CGGATGGGATGGTCTGTGTCATAACCAGGAAGTGCAAAACCGAAGGCTGC
AGGAAGCAGCCGTCGTTTGGAGTGGCCGGCACAAGAACGACGGAGTTCTG
CAGGCAGCACGCCTCGGATTTGATGGTTGATGTCCGGAATAGAAAGTGCA
GAACCGAAGGCTGCGGTAAGGGGCCGTCGTTCGGATTGGCCGATACGAAA
ATGGCGGAGTACTGTGCACAGCACGCCCCGGATGGAATGGTCGACGTCAT
AACAAGAAAGTGCAGAACCGAAGGCTGCAGGAAGCGGCCTTCTTTCGGAG
TGATCGGCACAAGAAGGAGGGAGTACTGTAGACAGCACGCACCAGACGGG
ATGGTGAACGTCAGGAGAACAAGAAAGTGCCAAACCGAAGGCTGCAATAA
ACACGCGTCGTTCGGAGTGACCGGCACAAGAACGGCGGAGTACTGCGTGC
AGCATGTACCAGACGGGATGGTCTGTGTCATAACCAGGAAGTGCAAAACC
GAAGGCTGCAGGAAGCAGCCGTCGTTTGGAGTGGCCGGCACAAGAACGAC
GGAGTTCTGCAGGCAGCACGCCTCGGATTTGATGGTTAATGTCCGGATTA
GAAAGTGCAGAACCGAAGACTGCGGCAAGAGGTCGTCGTTCGGATTGGCC
GGGACGAGAACGGCAGAGTACTGTGCGCAACACGCCCAGGATGGGATGGT
CGACGTCAGTACAAACATGTGCAGAACCGAAGGCTGCAATAAACACGCGT
CGTTTGGAGTGACCGGCACAAAAACGGTGGAGTACTGCGGAAAGCATGCA
CCAGACGGGATGGTCAACGTCAAGAACAGAAAGTGCAGGACGGAAGGTTG
CGGTAAGATTCCGTCGTTCGGAATGGCTGGGACAAAAACGGCGGAGTACT
GTGTACAACACGCCCGGGATGGGATGGTCGGCGTCAAAGGCAGAAAGTGT
AGAACCGAAGGCTGTAGCAAGCAGCCGTCGTTTGGAGTGACTGGCACAAA
AACGGCGGAGTACTGCGGGCAGCACGTACCAGACGGGATGGTCAATATCA
AGAGCAGAAAGTGCAGAACCGAAGACTGCAGGAAGGGGCCGTCGTTCGGA
ATGGCCGGGACAAAAACGGCGGATTACTGTGCCCAACACGCCCAGGATGG
GATGGTTGCCGTTAGGAACAGAAAGAAGTGTATAACTGAAGGCTGCAGGA
AGCAGCCGTCGTTTGGAGTGGCCGGTACAAGAACGACGGAGTACTGTGCA
CAGCATGCTCCGGATGGGATGGTCTCTGTCCTAACCAGGAAGTGCAAAAC
CGAAGACTGCGGTAAGAGGTCGTCGTTCGGATTGGCCGGGACGAAAGCGG
CTGAGTACTGTGCCCAACACGCCCCGGATGGGATGGTCAACGTCATGACA
AGAAAATGCAGAGCCAAAGGCTGCAGGAAGTGGCCGTTGTTTGGAATGAC
CGGCACAAGAACGGCGGAGTACTGTGCACAGCACGCCCTGGATGGGATGG
TCGACGTCATAACCAGAGAGTGCAGAGCCGAAAACTGGGGCAAGGGGGCG
TCGGTAGGATTTACCGGCACAAGAACGACGGAATACTATGCACAGGACAT
GGACGGGATGGACAACGTCAACAATAAATGTGCCCACCCAGGCTGCAATA
CACACGCGTTGTTCGGAGCGACCGGGACGAGGGAGACGAAGTACTGTGCA
CAGCACGCTAGGCCAAGATGTGGTGTCAAAGAATACATGAGACGAGAGAT
TGGCCCATACCACTCCGGGAAGGAACCCTTTGGTGACGCATGTCCGAGAG
GCGTTAAACGGAAAATTATTAATCCTGTTTCCGCCCAGACAAGCCCTCCT
TCGGGTGTTAGTGGGGGTTCTCTTAAGCGTTTACGACACGTTTACACCAC
GTTTACGGCGTCGAAGCAAGCTGCGTCGACGCGAGCTGTCGCACAAGATC
TGGGTGCAGTTGCGGTTGCTATGCCGGAAATCGTCTGGCAAACATCTCCT
ATCAAGCGAGATTCTTCCTTGAAGACAGAAGTGCAGCTATCCTTGTAGTC
AGGTATTTTTACAACAGCCGGCGGCTGGAGCTCATTTGATTCCTTTTGTA
TTTGTTCAGGTTAAAGATATATATTGTTTGTTTATGGTTCTTGCTTTGTG
TTTCGTCGCGAGGCATTTAGTTCAAGTTCAGCTGTAGTCTCAATACTCCT
CCTAGATCATCAAGACATTGTAGTCCCAGCAACTCTCTAACAAAACACGC
CACCTTTGCCTCACACGGCTTCGTTCTTTGGTAGGTACTGCGCTCAAGAG
CATCGTAATTGTATCGATACTAAAACCGCTGAGGTGCTGCTGGATCTGGT
AAGGATCCTGCCGTGCCAGGTATGCATGAACTGTTCTCCATCCTTGAATT
GCCCAGGTTTTTTTTTAATATCTGTCAGGCGACAAAGAAGTCGGTGGCAC
CGGATACTAGGACTACGCTATGAAGGATGACGTCCAAAGCTTTCCCGTAT
GACGATTTCGTTCGGGTGTGGCCTACGTTTTTTAAGGAAGGCGAGTTTAT
GTTTGGTACAGTAGCTGCCGCGAATGCGTACTCATCCGACAAATCCACAA
GCAGACAATTGTACAGTCTATAGTTCAGGCACAAGACTGCCTATTACTCG
TGCTGCAGCTTGGTCGTCGTGAGACATTTCTACAGTGTATATTGTTCGAT
ACAGGGAGCAGATGACTCCACATCGGAGAGGTCGGTGTGCTGTTTTTGCC
CAAGGTAGATCTAGTGTGGCTTGCCTTCTTCCCTATTATTGTTCATTGGT
ATTTTTTTCTGTAATACATCACCCGACCCCGTCGAGCCGGTGGTTGGTGC
TGCAGGGGCCTGGTGAGATTGCTGTTGTTCCTGCTACTGGTCGTACCTAG
CAAGGGGAGCCAGCCTTTTTGCAACCTCTGCCGAGAAATTGCGGCATCAA
GCCCAATCGTACCGAGTGTCTTCTATCTCTAGTTTGCGAGAAAAATGTTG
AAAATGGAACAAGTCGTAGATACTGCGCAAGGAATAAACGATACATCATC
TTTTTAGCTTGCTGCCTAGCACTAAAATCTTGATGACTATCATTTACAAT
AGCGGAATTGCGTGATGTACTCGCTTCAACGTTTGGAACTTAAGTTATGG
AAAAGCTGAAGCGTT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig8351:1695..5659+

>mRNA_A-nodosum_M_contig8351.2.1 ID=mRNA_A-nodosum_M_contig8351.2.1|Name=mRNA_A-nodosum_M_contig8351.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=2757bp|location=Sequence derived from alignment at A-nodosum_M_contig8351:1695..5659+ (Ascophyllum nodosum dioecious)
ATGCACAAAAAGGCATTCTCCGCAAAGCACGCCCCGGATGGGATGGTCGA
CATCATGGGCAGAAAGCATTGCAGAACCGAAGGCTGCGGCAAGCCTCCGT
CGTTCGAAGTGGACGGGACAAAAGCGGCGAAAAACTGTGCCCAGCACGCC
CAGAACGCGATGATAGACGTCAAGAACAGAACAAGCAGAACTGAAAGAGG
TGGCAAGGGGCCGTTTTTCGGGGTAGCCGGGACAAGAACGGCGAAGCACT
GTGCACAGCACCCCACAGTTGGCAGAAAGAGCAGAACCGAAGGCTGCAGG
AAGCAGCCGTCGTTTGGATTGGCCGGGAAAAAAACGGCGGAGTACTGTGC
AGAGCACGCCCCGAATGGAATGGTCTACGTCACAACCAGAAAGAAGTGTC
GGACCGAAGGCTGTCGCAGGATTCCGTCATTCAGTGTAGCCGGGACAAGA
ACGGCGACGTACTGTGCCCAGCACGCCCAGAACGAGATGGTCAACGTCAA
TGACAGAAAGTGCAGGCAAGGAGACTGCGGGAAGGGGCCGTCGTTCGGAA
TGGCCGGGACAAAAACGGCGGAGTACTGTGCACAACACGCTCCGGGGGGG
ATGGTCGACGTCAAGGGCAGAAAGACGTGTAGAACCGAATGCTGCAGGAA
GCAGCCGTCGTTTGGAGTGGCCGGTACAAGAACGGCGAAGTACTGTGCAC
AGCATGCTCCGGATGGGATGGTCTGTGTCATAACCAGGAAGTGCAAAACC
GAAGGCTGCAGGAAGCAGCCGTCGTTTGGAGTGGCCGGCACAAGAACGAC
GGAGTTCTGCAGGCAGCACGCCTCGGATTTGATGGTTGATGTCCGGAATA
GAAAGTGCAGAACCGAAGGCTGCGGTAAGGGGCCGTCGTTCGGATTGGCC
GATACGAAAATGGCGGAGTACTGTGCACAGCACGCCCCGGATGGAATGGT
CGACGTCATAACAAGAAAGTGCAGAACCGAAGGCTGCAGGAAGCGGCCTT
CTTTCGGAGTGATCGGCACAAGAAGGAGGGAGTACTGTAGACAGCACGCA
CCAGACGGGATGGTGAACGTCAGGAGAACAAGAAAGTGCCAAACCGAAGG
CTGCAATAAACACGCGTCGTTCGGAGTGACCGGCACAAGAACGGCGGAGT
ACTGCGTGCAGCATGTACCAGACGGGATGGTCTGTGTCATAACCAGGAAG
TGCAAAACCGAAGGCTGCAGGAAGCAGCCGTCGTTTGGAGTGGCCGGCAC
AAGAACGACGGAGTTCTGCAGGCAGCACGCCTCGGATTTGATGGTTAATG
TCCGGATTAGAAAGTGCAGAACCGAAGACTGCGGCAAGAGGTCGTCGTTC
GGATTGGCCGGGACGAGAACGGCAGAGTACTGTGCGCAACACGCCCAGGA
TGGGATGGTCGACGTCAGTACAAACATGTGCAGAACCGAAGGCTGCAATA
AACACGCGTCGTTTGGAGTGACCGGCACAAAAACGGTGGAGTACTGCGGA
AAGCATGCACCAGACGGGATGGTCAACGTCAAGAACAGAAAGTGCAGGAC
GGAAGGTTGCGGTAAGATTCCGTCGTTCGGAATGGCTGGGACAAAAACGG
CGGAGTACTGTGTACAACACGCCCGGGATGGGATGGTCGGCGTCAAAGGC
AGAAAGTGTAGAACCGAAGGCTGTAGCAAGCAGCCGTCGTTTGGAGTGAC
TGGCACAAAAACGGCGGAGTACTGCGGGCAGCACGTACCAGACGGGATGG
TCAATATCAAGAGCAGAAAGTGCAGAACCGAAGACTGCAGGAAGGGGCCG
TCGTTCGGAATGGCCGGGACAAAAACGGCGGATTACTGTGCCCAACACGC
CCAGGATGGGATGGTTGCCGTTAGGAACAGAAAGAAGTGTATAACTGAAG
GCTGCAGGAAGCAGCCGTCGTTTGGAGTGGCCGGTACAAGAACGACGGAG
TACTGTGCACAGCATGCTCCGGATGGGATGGTCTCTGTCCTAACCAGGAA
GTGCAAAACCGAAGACTGCGGTAAGAGGTCGTCGTTCGGATTGGCCGGGA
CGAAAGCGGCTGAGTACTGTGCCCAACACGCCCCGGATGGGATGGTCAAC
GTCATGACAAGAAAATGCAGAGCCAAAGGCTGCAGGAAGTGGCCGTTGTT
TGGAATGACCGGCACAAGAACGGCGGAGTACTGTGCACAGCACGCCCTGG
ATGGGATGGTCGACGTCATAACCAGAGAGTGCAGAGCCGAAAACTGGGGC
AAGGGGGCGTCGGTAGGATTTACCGGCACAAGAACGACGGAATACTATGC
ACAGGACATGGACGGGATGGACAACGTCAACAATAAATGTGCCCACCCAG
GCTGCAATACACACGCGTTGTTCGGAGCGACCGGGACGAGGGAGACGAAG
TACTGTGCACAGCACGCTAGGCCAAGATGTGGTGTCAAAGAATACATGAG
ACGAGAGATTGGCCCATACCACTCCGGGAAGGAACCCTTTGGTGACGCAT
GTCCGAGAGGCGTTAAACGGAAAATTATTAATCCTGTTTCCGCCCAGACA
AGCCCTCCTTCGGGTGTTAGTGGGGGTTCTCTTAAGCGTTTACGACACGT
TTACACCACGTTTACGGCGTCGAAGCAAGCTGCGTCGACGCGAGCTGTCG
CACAAGATCTGGGTGCAGTTGCGGTTGCTATGCCGGAAATCGTCTGGCAA
ACATCTCCTATCAAGCGAGATTCTTCCTTGAAGACAGAAGTGCAGCTATC
CTTGTAG
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