mRNA_A-nodosum_M_contig8346.1.1 (mRNA) Ascophyllum nodosum dioecious
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Overview
Homology
BLAST of mRNA_A-nodosum_M_contig8346.1.1 vs. uniprot
Match: D7FIN3_ECTSI (Microsomal Glutathione S-transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIN3_ECTSI) HSP 1 Score: 147 bits (372), Expect = 3.940e-40 Identity = 62/105 (59.05%), Postives = 85/105 (80.95%), Query Frame = 1
Query: 1 RFKVNYPTMYADESDPDAEAFNCYQRAHQNILENYPQFLVLLALASVHRPTIAAIAGAIRLMGFVSYALGYQTGDPDKRFRGTFGYIGFLALLVLSLELAVRLFV 315
++ + YP MYAD+SD + FNCYQRAHQN+LENYP FL+LL LA+++RPTIA +AGA+RL GFV+Y +GY+TGDP+KR RG FGYIG L +L ++E V++++
Sbjct: 37 KYGIKYPQMYADQSDANGVIFNCYQRAHQNVLENYPSFLLLLGLAAINRPTIAGVAGAVRLAGFVAYVIGYRTGDPEKRHRGAFGYIGLLTMLGCAIESVVKVYM 141
BLAST of mRNA_A-nodosum_M_contig8346.1.1 vs. uniprot
Match: A0A6H5KF61_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF61_9PHAE) HSP 1 Score: 147 bits (370), Expect = 8.040e-40 Identity = 61/106 (57.55%), Postives = 88/106 (83.02%), Query Frame = 1
Query: 1 RFKVNYPTMYADESDPDAEAFNCYQRAHQNILENYPQFLVLLALASVHRPTIAAIAGAIRLMGFVSYALGYQTGDPDKRFRGTFGYIGFLALLVLSLELAVRLFVS 318
++++ YP MYA++SDP+A FNCYQRAHQN+LENYP FL+LL LA+++RP +A +AGAIRL GFV+Y +GY+TG+P+KR +G FGYIG + +L ++E AV++ +S
Sbjct: 37 KYEIKYPQMYAEQSDPNAVIFNCYQRAHQNVLENYPSFLLLLGLAAINRPIVAGVAGAIRLAGFVAYVIGYRTGNPEKRHKGAFGYIGLITMLGCAIESAVKIGMS 142
BLAST of mRNA_A-nodosum_M_contig8346.1.1 vs. uniprot
Match: D7FIN2_ECTSI (Microsomal Glutathione S-transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIN2_ECTSI) HSP 1 Score: 137 bits (344), Expect = 5.700e-36 Identity = 58/106 (54.72%), Postives = 81/106 (76.42%), Query Frame = 1
Query: 1 RFKVNYPTMYADESDPDAEAFNCYQRAHQNILENYPQFLVLLALASVHRPTIAAIAGAIRLMGFVSYALGYQTGDPDKRFRGTFGYIGFLALLVLSLELAVRLFVS 318
++ + YP MYA++S+P+A FNCYQRAHQN+LENYPQFL+LL LA+++RP AA+AGAIR+ GF+ Y + Y++G PD R +G FGYIG +L +LE +L +S
Sbjct: 37 KYGIKYPQMYAEQSNPNAAVFNCYQRAHQNVLENYPQFLLLLGLAAINRPKFAAVAGAIRVAGFIVYVITYRSGGPDNRRKGAFGYIGLFMMLGCALEFTTKLCIS 142
BLAST of mRNA_A-nodosum_M_contig8346.1.1 vs. uniprot
Match: H3GBW9_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GBW9_PHYRM) HSP 1 Score: 133 bits (335), Expect = 1.410e-34 Identity = 61/103 (59.22%), Postives = 77/103 (74.76%), Query Frame = 1
Query: 1 RFKVNYPTMYADESDPDAEAFNCYQRAHQNILENYPQFLVLLALASVHRPTIAAIAGAIRLMGFVSYALGYQTGDPDKRFRGTFGYIGFLALLVLSLELAVRL 309
+F V YP MYA + D +A AFNC QRAHQN+LEN P F +LA +S++RPTIAA+AG +R+ GFV Y GY +GDP KR +G FGY+G L +L LSLE A+RL
Sbjct: 41 QFNVPYPQMYAAKKDKNANAFNCVQRAHQNVLENLPLFYAMLATSSIYRPTIAAVAGVVRIAGFVMYVKGYSSGDPGKRRQGNFGYLGTLVMLGLSLEAALRL 143
BLAST of mRNA_A-nodosum_M_contig8346.1.1 vs. uniprot
Match: A0A024ULQ9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024ULQ9_9STRA) HSP 1 Score: 132 bits (331), Expect = 5.020e-34 Identity = 60/103 (58.25%), Postives = 77/103 (74.76%), Query Frame = 1
Query: 1 RFKVNYPTMYADESDPDAEAFNCYQRAHQNILENYPQFLVLLALASVHRPTIAAIAGAIRLMGFVSYALGYQTGDPDKRFRGTFGYIGFLALLVLSLELAVRL 309
+F +NYP MYA++SD FNCYQRAHQN+LEN P FL LL ++SV+RPT AAIAG +R++GFV Y +GY TG+P KR G FG+I F A + L++E A RL
Sbjct: 39 KFNINYPQMYAEKSDEHCHEFNCYQRAHQNVLENLPVFLALLFVSSVYRPTWAAIAGFVRVVGFVVYVIGYSTGEPGKRQYGAFGFIAFFASMGLAVEAACRL 141
BLAST of mRNA_A-nodosum_M_contig8346.1.1 vs. uniprot
Match: G4ZNA9_PHYSP (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=G4ZNA9_PHYSP) HSP 1 Score: 132 bits (331), Expect = 5.490e-34 Identity = 60/103 (58.25%), Postives = 76/103 (73.79%), Query Frame = 1
Query: 1 RFKVNYPTMYADESDPDAEAFNCYQRAHQNILENYPQFLVLLALASVHRPTIAAIAGAIRLMGFVSYALGYQTGDPDKRFRGTFGYIGFLALLVLSLELAVRL 309
+F V YP MYA++SD +A FNC QRAHQN+LEN P F +LA +S++RP +AA AG +R+ GFV Y GY TGDP KR +G FGY+G L +L LSLE A+RL
Sbjct: 41 QFNVPYPQMYAEKSDKNANEFNCVQRAHQNVLENLPLFYAMLATSSIYRPKVAAAAGLVRIAGFVMYVKGYSTGDPGKRRKGNFGYLGTLVMLGLSLEAALRL 143
BLAST of mRNA_A-nodosum_M_contig8346.1.1 vs. uniprot
Match: A0A1V9Y7C0_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Y7C0_9STRA) HSP 1 Score: 131 bits (329), Expect = 9.890e-34 Identity = 60/105 (57.14%), Postives = 73/105 (69.52%), Query Frame = 1
Query: 4 FKVNYPTMYADESDPDAEAFNCYQRAHQNILENYPQFLVLLALASVHRPTIAAIAGAIRLMGFVSYALGYQTGDPDKRFRGTFGYIGFLALLVLSLELAVRLFVS 318
+K+ YP MYA+ D + AFNC QRAHQN+LEN P F LLA +S+ RP AAIAG IR+ GF++Y GY TGDP KR G FGY+G A + LS+E AVRL S
Sbjct: 39 YKIEYPQMYAERGDKNFNAFNCVQRAHQNMLENLPVFFTLLATSSIFRPGYAAIAGGIRVAGFIAYVQGYATGDPTKRMNGAFGYLGLFAAIGLSIEAAVRLITS 143
BLAST of mRNA_A-nodosum_M_contig8346.1.1 vs. uniprot
Match: D0MR47_PHYIT (Uncharacterized protein n=10 Tax=Phytophthora TaxID=4783 RepID=D0MR47_PHYIT) HSP 1 Score: 130 bits (328), Expect = 1.430e-33 Identity = 56/103 (54.37%), Postives = 79/103 (76.70%), Query Frame = 1
Query: 4 FKVNYPTMYADESDPDAEAFNCYQRAHQNILENYPQFLVLLALASVHRPTIAAIAGAIRLMGFVSYALGYQTGDPDKRFRGTFGYIGFLALLVLSLELAVRLF 312
+ + YP MYA++SD +A+AFNC QR HQNI+EN P FL L+ +S++RP IAAIA +R++GF+ Y GY +GDP KR +G FGY+G LA L+LS+E ++R+F
Sbjct: 40 YGIEYPQMYAEQSDKNAKAFNCVQRGHQNIMENIPIFLALVFTSSIYRPQIAAIASFVRILGFIVYMSGYSSGDPKKRMQGAFGYLGLLASLILSVEASLRIF 142
BLAST of mRNA_A-nodosum_M_contig8346.1.1 vs. uniprot
Match: A0A8J2P540_9HEXA (Hypothetical protein n=1 Tax=Allacma fusca TaxID=39272 RepID=A0A8J2P540_9HEXA) HSP 1 Score: 130 bits (328), Expect = 4.460e-33 Identity = 61/102 (59.80%), Postives = 79/102 (77.45%), Query Frame = 1
Query: 4 FKVNYPTMYADESDPDAEAFNCYQRAHQNILENYPQFLVLLALASVHRPTIAAIAGAIRLMGFVSYALGYQTGDPDKRFRGTFGYIGFLALLVLSLELAVRL 309
FKV +PTMY+D+S E FNCYQRAHQN LENYPQFL+LL LA + P ++++AG I ++G V YALGYQTGDP KR RG F Y+ LALL ++++L++RL
Sbjct: 86 FKVEFPTMYSDKS----ELFNCYQRAHQNTLENYPQFLLLLLLAGIEMPWVSSLAGLIWIVGRVVYALGYQTGDPKKRIRGAFAYLALLALLFVTIKLSLRL 183
BLAST of mRNA_A-nodosum_M_contig8346.1.1 vs. uniprot
Match: A0A8J2KTW7_9HEXA (Hypothetical protein n=1 Tax=Allacma fusca TaxID=39272 RepID=A0A8J2KTW7_9HEXA) HSP 1 Score: 133 bits (334), Expect = 5.770e-33 Identity = 61/102 (59.80%), Postives = 79/102 (77.45%), Query Frame = 1
Query: 4 FKVNYPTMYADESDPDAEAFNCYQRAHQNILENYPQFLVLLALASVHRPTIAAIAGAIRLMGFVSYALGYQTGDPDKRFRGTFGYIGFLALLVLSLELAVRL 309
FKV YPTMY+D+S E FNCYQRAHQN LENYPQFL+LL LA + P ++A+AG + + G V YALGYQTGDP KR +G F Y+G L LL+++++L++RL
Sbjct: 39 FKVEYPTMYSDKS----EVFNCYQRAHQNTLENYPQFLLLLLLAGIEMPCVSALAGLVWIAGRVVYALGYQTGDPKKRVQGAFAYLGLLTLLLITIKLSLRL 136 The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8346.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_A-nodosum_M_contig8346.1.1 >prot_A-nodosum_M_contig8346.1.1 ID=prot_A-nodosum_M_contig8346.1.1|Name=mRNA_A-nodosum_M_contig8346.1.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=99bp MYADESDPDAEAFNCYQRAHQNILENYPQFLVLLALASVHRPTIAAIAGAback to top mRNA from alignment at A-nodosum_M_contig8346:8967..11586- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_A-nodosum_M_contig8346.1.1 ID=mRNA_A-nodosum_M_contig8346.1.1|Name=mRNA_A-nodosum_M_contig8346.1.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2620bp|location=Sequence derived from alignment at A-nodosum_M_contig8346:8967..11586- (Ascophyllum nodosum dioecious)back to top Coding sequence (CDS) from alignment at A-nodosum_M_contig8346:8967..11586- >mRNA_A-nodosum_M_contig8346.1.1 ID=mRNA_A-nodosum_M_contig8346.1.1|Name=mRNA_A-nodosum_M_contig8346.1.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=297bp|location=Sequence derived from alignment at A-nodosum_M_contig8346:8967..11586- (Ascophyllum nodosum dioecious)back to top |