mRNA_A-nodosum_M_contig8319.3.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig8319.3.1
Unique NamemRNA_A-nodosum_M_contig8319.3.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8319.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8319contigA-nodosum_M_contig8319:9883..10409 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size528
Hectar predicted targeting categoryother localisation
Exons1
Cds size321
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870180.3628042-UTR-A-nodosum_M_contig8319:9882..100881680870180.3628042-UTR-A-nodosum_M_contig8319:9882..10088Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig8319 9883..10088 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870180.380591-CDS-A-nodosum_M_contig8319:10088..104091680870180.380591-CDS-A-nodosum_M_contig8319:10088..10409Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8319 10089..10409 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8319.3.1prot_A-nodosum_M_contig8319.3.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig8319 10089..10409 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig8319.3.1

>prot_A-nodosum_M_contig8319.3.1 ID=prot_A-nodosum_M_contig8319.3.1|Name=mRNA_A-nodosum_M_contig8319.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=107bp
GGARGVARGFLLPPPGNYLSRHAATVNGAVAAVAAESHAVGCRRTGLRGL
SGERHTFALSYETGMRGVELTAGGARRWQLGFHDSKAGGGGKGATFERVR
CNSSYS*
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mRNA from alignment at A-nodosum_M_contig8319:9883..10409-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig8319.3.1 ID=mRNA_A-nodosum_M_contig8319.3.1|Name=mRNA_A-nodosum_M_contig8319.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=527bp|location=Sequence derived from alignment at A-nodosum_M_contig8319:9883..10409- (Ascophyllum nodosum dioecious)
GGAGGAGCGCGCGGTGTCGCACGTGGTTTCTTGCTACCGCCTCCCGGGAA
CTACCTCAGTAGACATGCCGCCACCGTGAACGGTGCTGTTGCAGCCGTCG
CTGCCGAGTCGCATGCTGTAGGGTGCCGTAGGACCGGCCTTCGAGGGCTG
AGCGGGGAAAGACATACGTTCGCGCTTTCGTATGAAACGGGGATGAGAGG
GGTAGAGCTAACAGCAGGTGGAGCGCGACGCTGGCAGCTTGGCTTTCATG
ACAGTAAGGCAGGCGGAGGGGGGAAAGGCGCTACATTCGAAAGAGTACGT
TGCAACAGCAGTTACAGCTGACTTCGTGTTGCTGTACGCGAAGGAAGCTG
GCTCTTGTGTGCCTTTGGGTGTAGACTATAATAGTGCACTGGTGTTGCGA
GCTTGTTTTTAGTTGTCTCTTGAGGGTCTTGGTGAGTTGTTTGTGTGGTT
GTGGTTTGTGAGTGTATGAAAACGAGGAAGGGATAGAGGGATAAAGGCAA
GGCATACACAGAGAGGGGGGTGTAGCG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig8319:9883..10409-

>mRNA_A-nodosum_M_contig8319.3.1 ID=mRNA_A-nodosum_M_contig8319.3.1|Name=mRNA_A-nodosum_M_contig8319.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=321bp|location=Sequence derived from alignment at A-nodosum_M_contig8319:9883..10409- (Ascophyllum nodosum dioecious)
GGAGGAGCGCGCGGTGTCGCACGTGGTTTCTTGCTACCGCCTCCCGGGAA
CTACCTCAGTAGACATGCCGCCACCGTGAACGGTGCTGTTGCAGCCGTCG
CTGCCGAGTCGCATGCTGTAGGGTGCCGTAGGACCGGCCTTCGAGGGCTG
AGCGGGGAAAGACATACGTTCGCGCTTTCGTATGAAACGGGGATGAGAGG
GGTAGAGCTAACAGCAGGTGGAGCGCGACGCTGGCAGCTTGGCTTTCATG
ACAGTAAGGCAGGCGGAGGGGGGAAAGGCGCTACATTCGAAAGAGTACGT
TGCAACAGCAGTTACAGCTGA
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