mRNA_A-nodosum_M_contig8319.10.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig8319.10.1
Unique NamemRNA_A-nodosum_M_contig8319.10.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8319.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8319contigA-nodosum_M_contig8319:15126..15771 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size646
Hectar predicted targeting categoryother localisation
Exons1
Cds size375
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870180.4905114-UTR-A-nodosum_M_contig8319:15125..153451680870180.4905114-UTR-A-nodosum_M_contig8319:15125..15345Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig8319 15126..15345 -
1680870180.5149078-UTR-A-nodosum_M_contig8319:15720..157711680870180.5149078-UTR-A-nodosum_M_contig8319:15720..15771Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig8319 15721..15771 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870180.5048242-CDS-A-nodosum_M_contig8319:15345..157201680870180.5048242-CDS-A-nodosum_M_contig8319:15345..15720Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8319 15346..15720 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8319.10.1prot_A-nodosum_M_contig8319.10.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig8319 15346..15720 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig8319.10.1

>prot_A-nodosum_M_contig8319.10.1 ID=prot_A-nodosum_M_contig8319.10.1|Name=mRNA_A-nodosum_M_contig8319.10.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=125bp
MSPQTVPKSTFRMKEVHPYTSPTPSRVPLARPSTNANAKPPATPHRSPAP
APSVGLPPQAPAVGLTSAQPPIVTPSPPVFGAPSSTAPRPTVASDHLLDA
VNQLLLVARSASRAWGKLETFYRR*
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mRNA from alignment at A-nodosum_M_contig8319:15126..15771-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig8319.10.1 ID=mRNA_A-nodosum_M_contig8319.10.1|Name=mRNA_A-nodosum_M_contig8319.10.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=646bp|location=Sequence derived from alignment at A-nodosum_M_contig8319:15126..15771- (Ascophyllum nodosum dioecious)
CAGACGGTTCCCCAACAGAAGGTGCCGCCACGGACGGTTCCACTGCACAC
GATGTCGCCGCAGACTGTGCCGAAGTCCACGTTTCGCATGAAGGAAGTCC
ACCCTTACACATCGCCAACGCCCTCGAGGGTCCCACTGGCCAGGCCCTCC
ACCAACGCTAACGCAAAGCCACCGGCGACGCCACACCGCTCGCCGGCTCC
AGCTCCGAGCGTTGGCCTCCCGCCGCAAGCGCCGGCAGTAGGTCTCACCT
CAGCACAGCCGCCGATCGTGACGCCCTCTCCTCCCGTGTTCGGTGCTCCG
TCGTCCACAGCCCCCCGACCGACCGTTGCTAGCGACCACCTGCTGGATGC
AGTCAACCAGCTACTCTTGGTTGCCCGCTCCGCCTCCCGTGCATGGGGGA
AACTCGAAACCTTCTACCGGCGATGATACCATTGACGTGGGGCTGGATCC
GCCGGGGACGCGGCGACGTGCTCCGAGGTGACGCTTGGAGTTCCGCTGGC
GCTGAGCGGGAAAGAAATGGTGCCGAGCGAATCGGACTCGACCGCCGCTG
ACGACCCTATCGACGCGGGGTTGGATTCACCGGGCGGAGTCGTGCAGTCG
TCTCACCCAACGCTCAATGCTGCGTCGGCGCAGAGCATGGCAGGAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig8319:15126..15771-

>mRNA_A-nodosum_M_contig8319.10.1 ID=mRNA_A-nodosum_M_contig8319.10.1|Name=mRNA_A-nodosum_M_contig8319.10.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=375bp|location=Sequence derived from alignment at A-nodosum_M_contig8319:15126..15771- (Ascophyllum nodosum dioecious)
ATGTCGCCGCAGACTGTGCCGAAGTCCACGTTTCGCATGAAGGAAGTCCA
CCCTTACACATCGCCAACGCCCTCGAGGGTCCCACTGGCCAGGCCCTCCA
CCAACGCTAACGCAAAGCCACCGGCGACGCCACACCGCTCGCCGGCTCCA
GCTCCGAGCGTTGGCCTCCCGCCGCAAGCGCCGGCAGTAGGTCTCACCTC
AGCACAGCCGCCGATCGTGACGCCCTCTCCTCCCGTGTTCGGTGCTCCGT
CGTCCACAGCCCCCCGACCGACCGTTGCTAGCGACCACCTGCTGGATGCA
GTCAACCAGCTACTCTTGGTTGCCCGCTCCGCCTCCCGTGCATGGGGGAA
ACTCGAAACCTTCTACCGGCGATGA
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