mRNA_A-nodosum_M_contig8311.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig8311.2.1
Unique NamemRNA_A-nodosum_M_contig8311.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8311.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8311contigA-nodosum_M_contig8311:23667..25543 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1534
Hectar predicted targeting categoryother localisation
Exons2
Cds size330
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870180.055679-UTR-A-nodosum_M_contig8311:23666..246011680870180.055679-UTR-A-nodosum_M_contig8311:23666..24601Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig8311 23667..24601 -
1680870180.0903716-UTR-A-nodosum_M_contig8311:24931..250391680870180.0903716-UTR-A-nodosum_M_contig8311:24931..25039Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig8311 24932..25039 -
1680870180.1047318-UTR-A-nodosum_M_contig8311:25382..255431680870180.1047318-UTR-A-nodosum_M_contig8311:25382..25543Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig8311 25383..25543 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870180.072197-CDS-A-nodosum_M_contig8311:24601..249311680870180.072197-CDS-A-nodosum_M_contig8311:24601..24931Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8311 24602..24931 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8311.2.1prot_A-nodosum_M_contig8311.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig8311 24602..24931 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig8311.2.1

>prot_A-nodosum_M_contig8311.2.1 ID=prot_A-nodosum_M_contig8311.2.1|Name=mRNA_A-nodosum_M_contig8311.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=110bp
MAPSLDEKNFDDVYDVKRHIKLGNDRRVMVLGWPEFDVNNKECAIESTRA
AAFSLVNHSENPNCALEARETYAPTWDSKSKFVWYELTIKSLTDLASRVE
VTIAYSRAP*
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mRNA from alignment at A-nodosum_M_contig8311:23667..25543-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig8311.2.1 ID=mRNA_A-nodosum_M_contig8311.2.1|Name=mRNA_A-nodosum_M_contig8311.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1877bp|location=Sequence derived from alignment at A-nodosum_M_contig8311:23667..25543- (Ascophyllum nodosum dioecious)
CGGGCGTATGGACTTGCGCTTGTGCCTCCGTCGGCCTCAACTACATCGGG
GCAACGAGTGCGGTGGGAAAGACATCTTCGGTTTCAGGTCTTGGGAATGT
AATCTTCAACAATGCCTCGGCGGCGGGTCCGCCACACCATCGTGTACACC
GAAAATTGTTCGTAAGTCATGTTTCCTTTATATCCTGTACACCAATATTG
CGCTAATTATCTATGAAAAAGGTATACAGTACCTGTTCAGCAGGATGTAA
AAAGACAGATTTGATTGGAGACGTGCAAGTTTTCATTGTGCACCGATAAA
TACGCCACTGTTTTTGATCTTTATGGCGTTGTTACCAGTAATACTGTTTC
CAACTACGGGAACATTTCAACATCAAAGATCAAATAAATGAGGTCTGGGT
CTATAATAAGTTTCCATTTGCGGAGGCGTCAGGTGAGCGTACTGTACGAC
ATATGTGAGGGTAGACATAATGTTGTTCCCACGTCTTGTGTGTCGCCGTC
GTAGAAACCTGCGCAGGGCCTTCCTGCGCTTGAGATCGCCGCTTCAAAAA
TCAAAGGGTTTGGACTTTTCCTGCGTTCGGTTGCAGCGTCAGAGGAAGTT
CTGCTTAGAGCAATGGCACCCTCCCTGGACGAGAAAAACTTCGATGATGT
CTACGACGTTAAAAGGCATATCAAGCTTGGCAACGATAGACGAGTAATGG
TGCTTGGGTGGCCCGAGTTCGACGTCAACAACAAGGAATGTGCTATAGAG
TCGACGCGAGCAGCCGCGTTCTCGCTGGTGAACCATTCAGAAAATCCTAA
TTGTGCTTTGGAGGCACGTGAAACATATGCACCTACATGGGACTCGAAAT
CGAAGTTCGTGTGGTATGAGCTTACAATCAAATCACTGACGGATTTGGCT
TCTAGAGTTGAGGTCACGATTGCTTACAGCCGCGCGCCTTAGTAGGCATT
ATGCGGTTCATGTCAAATATGCCGGGGGGGTGGGGCAAGAATGGAAGGGC
GGAAGGGCGATCGGTTGCTGCGACACAACTTTTTATTTTGTTATAGCAAC
ATTCGCGGATTTTACAGGGGAGTGCAGGGGCAGGAGAGCGTAGATGTACA
CTTTTGCATTGCGGAGAAATGATGGGTCAAGGGTAGTTAATGGCGTGTAC
ATTGATTCGTGATCTGAGACGGCAGACGGTTCGAGATGAGGTGGGGCAAA
GGGCGGCTATCGAGGCTTCGCTCAATCCACCTGCATTTCTATTTTAGTTA
CAGTACAGGATTAATGTTCTAAACTACTGCACGATATAATGCATGGGGGG
TGGAGATGGGAACAAAACGTATGCCTTCCTTGTGATTGTATGTCGAATAA
GTGCGCTACTTCTCGGCAGTCAGCAGGGTAACGACAGGCTGCACGGGTAG
GGGCTAATACGCGCAGAATCGCGCCTTTGGGATTCGCGAGAATCGTACAT
ATTGAATGGAGATGAAAATTTGTGCGTTAGAGGTATTAGCAGGGATAATA
GCGCTGTAGTGTATTATCGCGTGGGCGGACGCCGGCGTCCACGAGTACAG
AATAAAAAAGGAGATAGCGAGAGAATGGGGAGGGGCGCACATTTTTACGT
GCCACGGTTTGGTGCGATGAGGAGCAATGACAGGTGTTGGCTTGAAACCG
TTCGACGGATATTTCGCGCGGGTGAAGCGTGAATCCTTTTAATTGGCAAC
TACTTTTTAGCGAATAGACAGTCTTGTCAACAACAAAAACTGGGAAATAT
GGACTGGTAATAAATTACATTCTACACAGACGCAGGTGTACTACAACGCC
AATGTTAGCTTCGCGTTCAGTAAGGCGGGAGTGTACACCACCGCGTAGAA
TTAATAGGAGAAGGCTGCAGTGCAAAA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig8311:23667..25543-

>mRNA_A-nodosum_M_contig8311.2.1 ID=mRNA_A-nodosum_M_contig8311.2.1|Name=mRNA_A-nodosum_M_contig8311.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=330bp|location=Sequence derived from alignment at A-nodosum_M_contig8311:23667..25543- (Ascophyllum nodosum dioecious)
ATGGCACCCTCCCTGGACGAGAAAAACTTCGATGATGTCTACGACGTTAA
AAGGCATATCAAGCTTGGCAACGATAGACGAGTAATGGTGCTTGGGTGGC
CCGAGTTCGACGTCAACAACAAGGAATGTGCTATAGAGTCGACGCGAGCA
GCCGCGTTCTCGCTGGTGAACCATTCAGAAAATCCTAATTGTGCTTTGGA
GGCACGTGAAACATATGCACCTACATGGGACTCGAAATCGAAGTTCGTGT
GGTATGAGCTTACAATCAAATCACTGACGGATTTGGCTTCTAGAGTTGAG
GTCACGATTGCTTACAGCCGCGCGCCTTAG
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