mRNA_A-nodosum_M_contig83.58.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig83.58.1
Unique NamemRNA_A-nodosum_M_contig83.58.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig83.58.1 vs. uniprot
Match: A0A6H5KEU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEU8_9PHAE)

HSP 1 Score: 284 bits (727), Expect = 4.470e-89
Identity = 139/233 (59.66%), Postives = 169/233 (72.53%), Query Frame = 1
Query:    1 HGACRAFLTRLRDAFFKVYRSDLVEVETALRQQGKSDAEIETMKEQNWGYFLSMCRRFIPPSDELLERFNLVVSVYGHLLDSKTKKPLLRREALDAVERLRVHIKTGYISDSPAISLYFEKGKDQLTGVTLYRCARGTNDLEGFHKHMRSLIEWCVGAGLGSDLLLELIYRWNLDRSISNRGLDGSIGGFYDQPIIEAIQKMSWSLFGKATFSDWIPTGAFADTGERGGFEKS 699
            HGACRA+L RLRD FFKV   DL  VE ALRQ G S  E+E  K ++W  FL  CRR IP   ELL+RF++V ++YG LLD KTK+PL R EAL+A++RLRVHI     SD+P  +LYFE GKD  T   L+RC RGTNDLEGFH HMR L+ WC+   L   LLLE  YRWNL +S+ NRGLD ++GGFYDQPI+EAIQ+M+  L+GKA +S W+PT A+ DTGER GF +S
Sbjct:  325 HGACRAYLARLRDEFFKVNAEDLAAVEAALRQAGMSKEEVEAKKGKDWVLFLKRCRRLIPRPAELLKRFDVVNNLYGGLLDKKTKQPLFRAEALEAIKRLRVHIMNDCCSDAPNEALYFEAGKDAETLCPLFRCIRGTNDLEGFHLHMRLLVAWCISPRLAHLLLLEYNYRWNLRQSMKNRGLDEAVGGFYDQPILEAIQRMTSKLYGKAKYSQWLPTSAYGDTGERSGFVRS 557          
BLAST of mRNA_A-nodosum_M_contig83.58.1 vs. uniprot
Match: A0A6H5JET4_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JET4_9PHAE)

HSP 1 Score: 290 bits (743), Expect = 2.430e-87
Identity = 141/233 (60.52%), Postives = 171/233 (73.39%), Query Frame = 1
Query:    1 HGACRAFLTRLRDAFFKVYRSDLVEVETALRQQGKSDAEIETMKEQNWGYFLSMCRRFIPPSDELLERFNLVVSVYGHLLDSKTKKPLLRREALDAVERLRVHIKTGYISDSPAISLYFEKGKDQLTGVTLYRCARGTNDLEGFHKHMRSLIEWCVGAGLGSDLLLELIYRWNLDRSISNRGLDGSIGGFYDQPIIEAIQKMSWSLFGKATFSDWIPTGAFADTGERGGFEKS 699
            HGACRA+L RLRDAFFKV   DL  VE ALRQ G S  E+E  K ++W YFL  CRR IP   ELLERF+LV ++YG L+D KTK+PL R EAL+A++RLRVHI     SDSP  +LYFE GKD  T   L+RC RGTNDLEG+H HMR L+ WC+   L   LLLE  YRWNL +S+ NRGLD ++GGFYDQP++EAIQ+M+  L+GKA +S W+PT A+ DTGER GF +S
Sbjct:  723 HGACRAYLARLRDAFFKVNAEDLAAVEAALRQAGMSKEEVEAKKAKDWVYFLKRCRRLIPRPAELLERFDLVNNLYGGLIDKKTKQPLFRAEALEAIKRLRVHIMNDCCSDSPNEALYFEAGKDAETLCPLFRCIRGTNDLEGYHLHMRLLVAWCISPRLAHLLLLEYNYRWNLRQSMKNRGLDEAVGGFYDQPMLEAIQRMTSKLYGKAKYSQWLPTSAYGDTGERSGFVRS 955          
BLAST of mRNA_A-nodosum_M_contig83.58.1 vs. uniprot
Match: A0A6H5JD89_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD89_9PHAE)

HSP 1 Score: 221 bits (563), Expect = 6.380e-66
Identity = 106/177 (59.89%), Postives = 132/177 (74.58%), Query Frame = 1
Query:  169 RFIPPSDELLERFNLVVSVYGHLLDSKTKKPLLRREALDAVERLRVHIKTGYISDSPAISLYFEKGKDQLTGVTLYRCARGTNDLEGFHKHMRSLIEWCVGAGLGSDLLLELIYRWNLDRSISNRGLDGSIGGFYDQPIIEAIQKMSWSLFGKATFSDWIPTGAFADTGERGGFEKS 699
            R IP   ELLERF+LV ++YG L+D KTK+PL R EAL+A++RLRVHI     SDSP  +LYFE GKD  T   L+RC RGTNDLEG+H HMR L+ WC+   L   LLLE  YRWNL +S+ NRGLD ++GGFYDQP++EAIQ+M+  L+GKA +S W+PT A+ DTGER GF +S
Sbjct:  206 RLIPRPAELLERFDLVNNLYGGLIDKKTKQPLFRAEALEAIKRLRVHIMNDCCSDSPNEALYFEAGKDAETLCPLFRCIRGTNDLEGYHLHMRLLVAWCISPRLAHLLLLEYNYRWNLRQSMKNRGLDEAVGGFYDQPMLEAIQRMTSKLYGKAKYSQWLPTSAYGDTGERSGFVRS 382          
BLAST of mRNA_A-nodosum_M_contig83.58.1 vs. uniprot
Match: D7G3Q9_ECTSI (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Q9_ECTSI)

HSP 1 Score: 185 bits (469), Expect = 2.410e-50
Identity = 87/202 (43.07%), Postives = 133/202 (65.84%), Query Frame = 1
Query:    1 HGACRAFLTRLRDAFFKVYRSDLVEVETALRQQGKSDAEIETMKEQNWGYFLSMCRRFIPPSDELLERFNLVVSVYGHLLDSKTKKPLLRREALDAVERLRVHIKTGYISDSPAISLYFEKGKDQLTGVTLYRCARGTNDLEGFHKHMRSLI-EWCVGAGLGSDLLLELIYRWNLDRSISNRGLDGSIGGFYDQPIIEAIQK 603
            HGA R  + RLRDA F V R D++++E  L ++G S A+++  K+Q+W YFL  CRR +PP  ELL+RF+ VV  +G+ +D+ +K+ LLR +++ AV  LR HI  G +SD   +++Y+  GK    G+  YRC RGTND+EG+H+++R+L+  +C    L   +LLE  +RWNL   + NRGL   +G  Y+Q ++E IQ+
Sbjct:  564 HGAFRPIMARLRDACFLVNRDDVLQIEKVLERRGMSPAQVQQAKDQDWSYFLRKCRRLVPPPSELLKRFDKVVQEFGNCVDNISKEVLLRPKSMKAVSLLRKHIVAGCLSDPDGVAMYYAVGKTT-DGLVNYRCVRGTNDVEGYHRYLRTLLASYCASPALAQSVLLEFNFRWNLKMMVKNRGLPAELGEHYNQHLVEIIQR 764          
BLAST of mRNA_A-nodosum_M_contig83.58.1 vs. uniprot
Match: A0A1Y2A9B5_9FUNG (3'-5' exonuclease domain-containing protein n=1 Tax=Rhizoclosmatium globosum TaxID=329046 RepID=A0A1Y2A9B5_9FUNG)

HSP 1 Score: 181 bits (460), Expect = 1.900e-49
Identity = 94/216 (43.52%), Postives = 129/216 (59.72%), Query Frame = 1
Query:    1 HGACRAFLTRLRDAFFKVYRSDLVEVETALRQQGKSDAEIETMKEQNWGYFLSMCRRFIPPSDELLERFNLVVSVYGHLLDSKTKKPLLRREALDAVERLRVHIKTGYISDSPAISLYFEKGKDQLTGVTLYRCARGTNDLEGFHKHMRSLIE-WCVGAGLGSDLLLELIYRWNLDRSISNRGLDGSIGGFYDQPIIEAIQKMSWSLFGKATFSDW 645
            HGA + F+ RLRDAFF + + DL  V  AL+  G SD EIE  K+ +W +FL  C R IP  +ELL+R++ V + +  +LDSKT +PL R      V  LR HI+ G +SD P I LYF +G+    G+ +YRCARGTN  EG+H+HMR L+  +     L   LLLE  +RWN+  ++ NRGL    GGFY Q +++ I + S  L     +  W
Sbjct:  454 HGAYKPFMARLRDAFFLISKDDLDLVVAALKTAGLSDDEIEAKKDYDWAFFLKYCHRLIPCKEELLKRYDFVCNTFQDILDSKTNEPLFRSNTKKEVRNLRKHIQNGCLSDVPDIPLYFLEGRTS-QGLPIYRCARGTNSNEGYHRHMRKLLHHYASSPMLLHLLLLEFNFRWNIRMAVKNRGLPSEYGGFYSQSLLDEINRNSSGLSVHVPYLAW 668          
BLAST of mRNA_A-nodosum_M_contig83.58.1 vs. uniprot
Match: A0A6H5JRJ6_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRJ6_9PHAE)

HSP 1 Score: 181 bits (459), Expect = 1.230e-48
Identity = 99/249 (39.76%), Postives = 146/249 (58.63%), Query Frame = 1
Query:    1 HGACRAFLTRLRDAFFKVYRSDLVE-------------VETALRQQGKSDAEIETMKEQNWGYFLSMCRRFIPPSDELLERFNLVVSVYGHLLDSKTKKPLLRREALDAVERLRVHIKTGYISDSPAISLYFEKGKDQLTGVTLYRCARGTNDLEGFHKHMRSLI-EWCVGAGLGSDLLLELIYRWNLDRSISNRGLDGSIGGFYDQPIIEAIQK--MSWSLFGKATFSDWIPTGAFADTGERGGFEKS 699
            HGA + F+ RLRDA F V R D+ +             VE  L  +G    E++ + EQNW +FL   RR +P  D LL+RF+ V+  +G  +D+ + + LLR +A+ AV +LR HI+   +SD   +++YF  GK++  G+T YRC RGTND+EG+H+++R+L+  +C    L   +LLE  YRWNL   I NRGL  ++GG Y+Q ++E+IQ+    W       F +W       DTGER G E+S
Sbjct:  507 HGAFKPFMARLRDACFLVNRDDVYQASLKPFGWIWERSVEMTLEARGMKPEEVQQLTEQNWSFFLRSSRRLVPRRDVLLKRFDRVIEEFGGCVDNTSGEVLLRPKAMKAVRQLRKHIENDCLSDPDGMAMYFAIGKNK-HGLTDYRCVRGTNDVEGYHRYLRTLLASYCASPSLAQSVLLEFNYRWNLRMMIKNRGLPAALGGHYNQYLVESIQRDTADWDS-SHPVFPEWPAAIDSVDTGERFGLERS 753          
BLAST of mRNA_A-nodosum_M_contig83.58.1 vs. uniprot
Match: A0A6H5K811_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K811_9PHAE)

HSP 1 Score: 179 bits (454), Expect = 3.400e-48
Identity = 95/237 (40.08%), Postives = 142/237 (59.92%), Query Frame = 1
Query:    1 HGACRAFLTRLRDAFFKVYRSDLVEVETALRQQGKSDAEIETMKEQNWGYFLSMCRRFIPPSDELLERFNLVVSVYGHLLDSKTKKPLLRREALDAVERLRVHIKTGYISDSPAISLYFEKGKDQLTGVTLYRCARGTNDLEGFHKHMRSLIE-WCVGAGLGSDLLLELIYRWNLDRSISNRGLDGSIGGFYDQPIIEAIQKMSWSLF-GKATFSDWIPTGAFADTGERGGFEKSEL 705
            HGA       LRDA F V ++D+   E  L+ +GKS A+I+ MK ++WG+FL   RR +P  + LL RF+ V+S    + D+KT + LL   A+ AV  LR HI+ G  SD   + LYFE+GK   TG+T +RC RGTN  EG+H+++++L+  +C    +   +L+E  +RWN+ R++ NRG+   IGGF  Q +I+ IQ+ +   +  +  FS W+    F D+GER G   S L
Sbjct:  274 HGAFFLLCALLRDAIFMVNQADIKAAERVLQNEGKSAADIQNMKAKDWGFFLKNARRRVPAPEVLLARFDAVISACKDIRDAKTGQVLLSPAAMKAVGLLREHIRLGCFSDPVGVPLYFERGKTS-TGLTRFRCVRGTNSTEGYHRYLKTLLAAFCASPEVCHTVLMEFNHRWNISRAVENRGMAAEIGGFSHQYMIDHIQRATAEWYPDQPLFSGWVAPADFEDSGERAGLAASVL 509          
BLAST of mRNA_A-nodosum_M_contig83.58.1 vs. uniprot
Match: A0A0C9T7S3_PAXIN (Uncharacterized protein n=1 Tax=Paxillus involutus ATCC 200175 TaxID=664439 RepID=A0A0C9T7S3_PAXIN)

HSP 1 Score: 112 bits (279), Expect = 1.550e-24
Identity = 77/225 (34.22%), Postives = 114/225 (50.67%), Query Frame = 1
Query:    1 HGACRAFLTRLRDAFFKVYRSDLVEVETALRQQGKSDAEIETMKEQNWGYFLSMCRRFIPPSDELLERFNLVVSVYGHLLDSKTKKPLLRREALDAVERLRVHIKTGYISDSPAISLYFEKGKDQLTGVTLYRCARGTNDLEG-FHKHM--RSLIEWCVGAGLGSDLLLELIYRWNLDRSISNRGLDGSIGGFYDQPI---IEAIQKMSWSLFGKAT---FSDWI 648
            HG  R F   L  A F     D   VE  L++ G S  E + + +  W   L+  RR++PP++ LL R   V+  +G L DS T +PL   +A DA + +  HI+ GY SD P +SLYFE GKD+  G+TLYRC RGTNDLEG  H+++  R    + V      ++ LE     N+     NR       G +D P+   + A+ +++   F +     +  W+
Sbjct: 1194 HGLRRPFARALSAAIFFTDPIDKCAVEEILKK-GNSSYEAKLLSKPKW--VLARVRRYVPPAEILLSRVAAVIQTFGPLKDSTTGQPLFNEKAWDAAKNILEHIRGGYYSDPPGVSLYFEVGKDK-HGLTLYRCCRGTNDLEGGVHQNLIRRWQASFNVSPRRAHNMALEYGVTHNMQVGTENR-TGHPYKGHFDVPLKNRVSALLELTAQYFNREPQLGYGQWV 1413          
BLAST of mRNA_A-nodosum_M_contig83.58.1 vs. uniprot
Match: A0A8I3AEJ8_9AGAM (Uncharacterized protein n=1 Tax=Boletus reticuloceps TaxID=495285 RepID=A0A8I3AEJ8_9AGAM)

HSP 1 Score: 99.0 bits (245), Expect = 5.070e-20
Identity = 58/144 (40.28%), Postives = 80/144 (55.56%), Query Frame = 1
Query:    1 HGACRAFLTRLRDAFFKVYRSDLVEVETALRQQGKS-DAEIETMKEQNWGYFLSMCRRFIPPSDELLERFNLVVSVYGHLLDSKTKKPLLRREALDAVERLRVHIKTGYISDSPAISLYFEKGKDQLTGVTLYRCARGTNDLEG 429
            HG  R F   L  A F    +D   VE  LR Q  +  A++++  E    + L+  RR++PP + L  R   VV  YG L D+ T +PL   +A D  + +  H++ GY SD P + LYFE GKD   G+TLYRC RGTN++EG
Sbjct: 1106 HGLRRPFTRALSAAIFLTNTNDKRAVEEVLRAQNMTYSAKLKSRPE----WVLTRVRRYVPPPEILYSRVASVVKTYGPLQDTTTGQPLFNDKAWDVTKNILEHVRKGYYSDPPDVPLYFEVGKDA-HGLTLYRCCRGTNNVEG 1244          
BLAST of mRNA_A-nodosum_M_contig83.58.1 vs. uniprot
Match: UPI0004622F01 (uncharacterized protein n=1 Tax=Trametes versicolor (strain FP-101664) TaxID=717944 RepID=UPI0004622F01)

HSP 1 Score: 98.2 bits (243), Expect = 9.260e-20
Identity = 56/143 (39.16%), Postives = 79/143 (55.24%), Query Frame = 1
Query:    1 HGACRAFLTRLRDAFFKVYRSDLVEVETALRQQGKSDAEIETMKEQNWGYFLSMCRRFIPPSDELLERFNLVVSVYGHLLDSKTKKPLLRREALDAVERLRVHIKTGYISDSPAISLYFEKGKDQLTGVTLYRCARGTNDLEG 429
            HG  R F   L  A F   R D   VE  L+Q+G S    + + +  W   L   RR++PP + LL R   V+  YG L DS T +PL  + A D    +  +++ GY SD P + L+++ G+D+  G+TLYRC RGTND+EG
Sbjct: 1039 HGLRRPFSRALSAALFIPDREDKAAVEAVLKQRGLS-YNSKILSDPAW--VLRRVRRYVPPPEILLPRVTAVIKTYGALKDSVTGQPLFNQRAWDISANILENVRMGYYSDPPGLQLFYQIGQDKY-GLTLYRCCRGTNDVEG 1177          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig83.58.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KEU8_9PHAE4.470e-8959.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JET4_9PHAE2.430e-8760.523'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5JD89_9PHAE6.380e-6659.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3Q9_ECTSI2.410e-5043.073'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A1Y2A9B5_9FUNG1.900e-4943.523'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5JRJ6_9PHAE1.230e-4839.763'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5K811_9PHAE3.400e-4840.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A0C9T7S3_PAXIN1.550e-2434.22Uncharacterized protein n=1 Tax=Paxillus involutus... [more]
A0A8I3AEJ8_9AGAM5.070e-2040.28Uncharacterized protein n=1 Tax=Boletus reticuloce... [more]
UPI0004622F019.260e-2039.16uncharacterized protein n=1 Tax=Trametes versicolo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig83contigA-nodosum_M_contig83:668130..669255 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G3Q9
Preferred nameWRN
PFAMsDEAD,DNA_pol_A_exo1,HRDC,HTH_40,Helicase_C,RQC,RecQ_Zn_bind
Model size713
Max annot lvl2759|Eukaryota
KEGG koko:K10900,ko:K20777
Hectar predicted targeting categoryother localisation
GOsGO:0000018,GO:0000019,GO:0000217,GO:0000287,GO:0000400,GO:0000403,GO:0000405,GO:0000723,GO:0000724,GO:0000725,GO:0000731,GO:0000738,GO:0000781,GO:0001302,GO:0001325,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003682,GO:0003684,GO:0003824,GO:0004003,GO:0004386,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005730,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006281,GO:0006284,GO:0006302,GO:0006308,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007154,GO:0007275,GO:0007568,GO:0007569,GO:0008026,GO:0008094,GO:0008104,GO:0008150,GO:0008152,GO:0008156,GO:0008296,GO:0008297,GO:0008309,GO:0008310,GO:0008311,GO:0008408,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009267,GO:0009314,GO:0009378,GO:0009411,GO:0009416,GO:0009605,GO:0009628,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010212,GO:0010225,GO:0010259,GO:0010332,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010941,GO:0015630,GO:0016043,GO:0016462,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0016796,GO:0016817,GO:0016818,GO:0016887,GO:0016895,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0022607,GO:0030145,GO:0031297,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032200,GO:0032356,GO:0032357,GO:0032392,GO:0032501,GO:0032502,GO:0032508,GO:0033036,GO:0033365,GO:0033554,GO:0034504,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0040008,GO:0040009,GO:0042162,GO:0042592,GO:0042594,GO:0042623,GO:0042802,GO:0042803,GO:0042981,GO:0042995,GO:0043005,GO:0043067,GO:0043085,GO:0043138,GO:0043140,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044464,GO:0044806,GO:0044877,GO:0045005,GO:0045910,GO:0045911,GO:0045934,GO:0045935,GO:0045950,GO:0046483,GO:0046700,GO:0046872,GO:0046914,GO:0046983,GO:0048478,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051054,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051276,GO:0051336,GO:0051345,GO:0051641,GO:0051716,GO:0051880,GO:0060249,GO:0060255,GO:0060542,GO:0061749,GO:0061820,GO:0061821,GO:0061849,GO:0062037,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070035,GO:0070336,GO:0070337,GO:0070727,GO:0071103,GO:0071214,GO:0071478,GO:0071479,GO:0071480,GO:0071496,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090305,GO:0090329,GO:0090656,GO:0090657,GO:0090737,GO:0097159,GO:0097458,GO:0098530,GO:0098687,GO:0104004,GO:0120025,GO:0140097,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902570,GO:1905773,GO:2000104,GO:2000112,GO:2000113
Exons3
Evalue3.95e-51
EggNOG OGsKOG4373@1|root,KOG4373@2759|Eukaryota
EC3.1.11.1,3.6.4.12
Description3'-5' exonuclease activity
Cds size711
COG categoryC
BRITEko00000,ko01000,ko03032,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870174.1367388-CDS-A-nodosum_M_contig83:668131..6682421680870174.1367388-CDS-A-nodosum_M_contig83:668131..668242Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig83 668132..668242 -
1680870174.1557887-CDS-A-nodosum_M_contig83:668436..6688661680870174.1557887-CDS-A-nodosum_M_contig83:668436..668866Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig83 668437..668866 -
1680870174.1662536-CDS-A-nodosum_M_contig83:669085..6692551680870174.1662536-CDS-A-nodosum_M_contig83:669085..669255Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig83 669086..669255 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig83.58.1prot_A-nodosum_M_contig83.58.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig83 668132..669255 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig83.58.1

>prot_A-nodosum_M_contig83.58.1 ID=prot_A-nodosum_M_contig83.58.1|Name=mRNA_A-nodosum_M_contig83.58.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=237bp
HGACRAFLTRLRDAFFKVYRSDLVEVETALRQQGKSDAEIETMKEQNWGY
FLSMCRRFIPPSDELLERFNLVVSVYGHLLDSKTKKPLLRREALDAVERL
RVHIKTGYISDSPAISLYFEKGKDQLTGVTLYRCARGTNDLEGFHKHMRS
LIEWCVGAGLGSDLLLELIYRWNLDRSISNRGLDGSIGGFYDQPIIEAIQ
KMSWSLFGKATFSDWIPTGAFADTGERGGFEKSELLG
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mRNA from alignment at A-nodosum_M_contig83:668130..669255-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig83.58.1 ID=mRNA_A-nodosum_M_contig83.58.1|Name=mRNA_A-nodosum_M_contig83.58.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=1126bp|location=Sequence derived from alignment at A-nodosum_M_contig83:668130..669255- (Ascophyllum nodosum dioecious)
CATGGAGCGTGTCGTGCTTTTCTAACGCGCTTGCGTGACGCTTTCTTCAA AGTTTACCGATCTGATCTCGTGGAAGTCGAGACGGCGCTCCGTCAGCAGG GAAAGTCTGATGCTGAAATTGAAACGATGAAGGAGCAGAACTGGGGCTAT TTCCTGAGTATGTGTCGACGGTAAGGGTGGCAATCGTCTCTTGGTCTTCT GAAGTTGCGTGTTGAGTGCACAAATTGTGTTCTCGTGGGGGTGAAATGCA GTGCAGCTCAAGTACGATCTTTGTTCATGCCTACAGTCGTGATCTCTTTG GCAGCGCTCGCCTACCTTAATACATGGTAACTCAACTACACCCCCCCTCC ACCCTCGCCTCATTACACTCCACCCATCACACAACACAGGTTTATTCCGC CCAGCGACGAGCTACTAGAACGCTTCAACCTCGTCGTGAGTGTATATGGT CACCTGCTGGACAGCAAGACCAAGAAGCCCCTCCTTCGACGGGAGGCGTT GGACGCTGTTGAGCGACTGCGGGTCCACATCAAGACAGGATACATCAGCG ACAGCCCGGCAATTTCGCTTTACTTCGAGAAAGGCAAGGATCAGCTCACG GGTGTAACGCTCTACCGATGTGCGCGCGGCACCAACGATCTCGAGGGCTT TCACAAGCACATGCGTAGCCTGATCGAGTGGTGCGTCGGGGCGGGTTTGG GGAGCGATCTTCTTCTGGAGTTGATCTATCGCTGGAACTTGGACCGGAGC ATCAGCAACAGAGGTCTTGATGGTTCCATCGGTGGTTTCTATGATCAGCC CATCATCGAAGCTATCCAGGTGTGCTGGGCCTGTGTTCGGACTCAGCTCA GAGTATATCGAGGTATCAGTGTGAAAATACTCTTGGCCCTGCGCGTGTCA TTTGTTTTTTCCCCACTTGGTAACCAATACCACCCTCGGCTACCCACCTG TTTTTTTCCCAGCCGGTGATTTACTACTCACTGTTTTTGTTTCGAACCCC ACCCTTTCTGTAGAAAATGAGCTGGAGCCTGTTCGGCAAGGCCACGTTCT CTGATTGGATACCTACTGGCGCATTCGCTGATACCGGGGAGAGGGGTGGT TTCGAGAAAAGCGAGCTGCTGGGAGA
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Coding sequence (CDS) from alignment at A-nodosum_M_contig83:668130..669255-

>mRNA_A-nodosum_M_contig83.58.1 ID=mRNA_A-nodosum_M_contig83.58.1|Name=mRNA_A-nodosum_M_contig83.58.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=711bp|location=Sequence derived from alignment at A-nodosum_M_contig83:668130..669255- (Ascophyllum nodosum dioecious)
CATGGAGCGTGTCGTGCTTTTCTAACGCGCTTGCGTGACGCTTTCTTCAA
AGTTTACCGATCTGATCTCGTGGAAGTCGAGACGGCGCTCCGTCAGCAGG
GAAAGTCTGATGCTGAAATTGAAACGATGAAGGAGCAGAACTGGGGCTAT
TTCCTGAGTATGTGTCGACGGTTTATTCCGCCCAGCGACGAGCTACTAGA
ACGCTTCAACCTCGTCGTGAGTGTATATGGTCACCTGCTGGACAGCAAGA
CCAAGAAGCCCCTCCTTCGACGGGAGGCGTTGGACGCTGTTGAGCGACTG
CGGGTCCACATCAAGACAGGATACATCAGCGACAGCCCGGCAATTTCGCT
TTACTTCGAGAAAGGCAAGGATCAGCTCACGGGTGTAACGCTCTACCGAT
GTGCGCGCGGCACCAACGATCTCGAGGGCTTTCACAAGCACATGCGTAGC
CTGATCGAGTGGTGCGTCGGGGCGGGTTTGGGGAGCGATCTTCTTCTGGA
GTTGATCTATCGCTGGAACTTGGACCGGAGCATCAGCAACAGAGGTCTTG
ATGGTTCCATCGGTGGTTTCTATGATCAGCCCATCATCGAAGCTATCCAG
AAAATGAGCTGGAGCCTGTTCGGCAAGGCCACGTTCTCTGATTGGATACC
TACTGGCGCATTCGCTGATACCGGGGAGAGGGGTGGTTTCGAGAAAAGCG
AGCTGCTGGGA
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