mRNA_A-nodosum_M_contig83.43.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig83.43.1
Unique NamemRNA_A-nodosum_M_contig83.43.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig83.43.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig83contigA-nodosum_M_contig83:431249..438369 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size218
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size144
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870168.742829-CDS-A-nodosum_M_contig83:431248..4313331680870168.742829-CDS-A-nodosum_M_contig83:431248..431333Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig83 431249..431333 -
1680870168.755596-CDS-A-nodosum_M_contig83:438236..4382951680870168.755596-CDS-A-nodosum_M_contig83:438236..438295Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig83 438237..438295 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870168.7663622-UTR-A-nodosum_M_contig83:438295..4383691680870168.7663622-UTR-A-nodosum_M_contig83:438295..438369Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig83 438296..438369 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig83.43.1prot_A-nodosum_M_contig83.43.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig83 431249..438295 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig83.43.1

>prot_A-nodosum_M_contig83.43.1 ID=prot_A-nodosum_M_contig83.43.1|Name=mRNA_A-nodosum_M_contig83.43.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=48bp
MAAGGSSSCAVLVDGFIKCWVMNVRRSYLRIRFNTSWTNHVRACGEV*
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mRNA from alignment at A-nodosum_M_contig83:431249..438369-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig83.43.1 ID=mRNA_A-nodosum_M_contig83.43.1|Name=mRNA_A-nodosum_M_contig83.43.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=7121bp|location=Sequence derived from alignment at A-nodosum_M_contig83:431249..438369- (Ascophyllum nodosum dioecious)
GGCGAAGTGCCCACCGACATGGGTGAGAACCTCAACCATGTCGGTGGATT
TGGGTGGTACGGCCGGCCTCGGACATGGCTGCCGGTGGGTCATCTTCCTG
CGCCGTTCTGGTCGACGGCTTCATCAAGTGCTGGTGAGGGCAGGGCGCAC
ATTACATTCGTCTCTCTATGATTATTTATAGTGATTTCGATGTGTACAGC
ACAAAGCACTCCAATGTGTCTTTTTCTTTTCCGATCGTCCCATCGAGAGC
TCGCGGTCATTTTTTCTTTAAGGACGTCTAATACTGTCTGTAGAACAAAA
AAAATCCAGTGCGTTGGGAGGGTCGGCGCGTGCCAATTTCTCGTGCGCCA
CAACGCAACAGAGAATACCGGTAGTTTTGCCTCAAAAGCGACAGAGGAGG
CTCTTGTTTGTCTTTGGATTTTTATTTTCAGTTCCACACAACATACTGTA
CGCAACCGTCCTTACACATATAGTCGATTGGATTAACCACATCCACACCG
TAGAATCTATGGTCCGCCTAACGTCACCAACCCTCCCTCCCTCCTTTGTC
ACGTTATTATTTAATACTGAGTGATAGGGGCTTAGGAAGCAGTGGGCAGC
TCGGTCAGGGCAACGACGAAAACATCAGCAACGTGCCTGGGGTTCTCGCT
GACACGGCGCCGATTGACCCCGGCGACCTCGGTAGGAAATTTTTCAACTC
TTTCAACTCTTCCTCCCGCCTGATTCTATTAAAATAGTGTACTATGAGTC
GAGATCCGCAGCAGCGGAACAGACGAGCTATGATAAGTCCCATGAAAAGA
ACTGGCTTTGCGAAGAGAACACCGCCGTGCTCTTGATATCCACGGCTCCA
TTTTCCTTCCTGCTCGCTTATGAAGGAGGGCAACAACTCAAAAGCTCACA
TGTTATGTCCCCCATTGCAGATTCTACCCTAGATCAAACCTCATATTCCC
CTCCCCCATCCCCTTGCAGATGATGTCCTTGTCCCCTTCCACGGCGAATG
AAACCGCCGCGCCCTCCTCTACGGCCAGCGGCATTTCTGGTGAAGTTCGC
AGAAAAACGTTTCCGTGTCGCGTACGCGAACGTCACCAGTGGGGGGTCAT
TTTTAGGGACGGGGACGGGAGGGGGTGCGCACTTGTATGACCCACGTGTG
ATTAGATCGGGATCTTGACCTTAGAACATTGCATGACACAAGCAGTTTGT
CGCCTGGCTCAAGAAGTTGAAGAGGGGTAAAGCAAATAATTGATCGTCGT
GGGGCGAAGTGGAAGAGGGTTGATTTCCTGTTGTTCCGCTCCATCGCTAA
GTACGACTCTGCGGTAAAAACTCACGCGGTGACTATTAATAGTCCTTCGT
TCGATCTCCCACCCACATTCATTCATAATCTCTGATGTATTCCCGCCCAA
TGCGTCTTCCCTTTGCTTGGGTTTCCGCCTGTTGCTGCCTCGTAACGCAC
TCAGTCGGGGGACTTCTGGCGGCGGGCGGTTGTGGTGGGTGCCACCGGCT
TCTTGTGAGTCGTTTTCATGTAGGGCTGGGCGCCCGATTGAGATGAACAT
CTTCGCCTTTCTCTTTTGGGGGTATGGCGGGAACGAGAGGTTGGCGTCTT
GTGAGGATGCGTGCCCGCGTTGTTTGGGCGTTGTGCCATGCGTGAAGCTC
CGCCGAGCATGGGTACAGGCGGTATTCACAGTCTCAGATGTGATCGGTTG
CCTTCGCTTCCATTTTCTTTTTCGACGTTCTCTCGCTCACGTTTTTATAC
ATGCCGTGCAAGCACTCGGAATCACCCCGTACGTTTTCCTTGTAGTGGCC
GTTTGTCCTTGTTACGGTCGTTTTTGTGCCCGTTCCCCGCAGTTTATGTA
TGCATAGGGTTGTGATGAATGTTTCGTGTCCAAAGCTTTGTGGTTCATAG
CCACGTCGTGTTTTCGTAACTCATGCTTCCTTCCTTTATCCTCTCTCTCT
TGTGCCCCTACCGCGTTGGAGATGGCCGTATTAATACTAAAATAAGGTGG
AGGGGCGAGGAAGCGCTATCCGATTCCGATTCTTCTTCTTCTTCTGGTGT
TTTCTATGTCTGGCGTTATTGTTTATTCCGTGTTTTCTTGTACTGTAAGG
TGGCGGTGCAGTTGTATGCCTGTAAATCTGTCTGTTTTCACCCTTCGGTT
TAGTTGCCCGCAGGTGCAACGCGTGTGTACTTAGCGCTCGCGCTACACAT
CCATCTTATTAATAGGTACCTGGTGCCTGTCACCCGCAAAATAATAGGAG
CTGACGCCGCAATGCCCCAAAGAAAAAAATAAAAGAGAGAGAGTGCGAGA
TGCCAAGGCCACTGAATGATGATGTTCTTATACGTAATTTGTTCGTACAG
GGTAATGAATGTACGTAGGTCATATTTGCGGATCCGGTTCAACACATCTT
GGACCAATCACGTAAGGGCATGTGGAGAGGTGTAGCGTACAGATAAGCTG
AGGTACGTAGGTCCGGTTTAACACATCTTGGACCAATCACATAAGGGCAT
GTGGAGTGGCGTAGTTATGCCACATTATTCTGAGTAGGTCAGGGCTGGTG
CCACCTCTCACTTCCTCTCCACCCCTTCTCCCTCGTCTCTACCTGAGCGT
CCTGTGTAATAAAATTATTAAAGAAGACTCAGCGCTACACTGCGGAAGGC
AGCGATCGCCTCAAACCCTAGAAACACGAATACACTAGTGTATCCTTCGG
TAAGGAGTTTCAGGTTTCGAGAATGAGTGAACACAGTGCTTCGCCAAGAC
TAGAGGCTTTGGAGTCAAGTGTCTCAGAGATCCAGGAGAGAATGAGTGAG
CTGGTCGGCATGTTGCGGCAGCTTACTACGGAGACCAGAACAGCAGGTGA
CGGTCGACGTGGAGAGGAGTCAGGCGGCGCCAGAAGGGACGCCGCCCACA
TCTACAGCAGCGGTGCAAGAAGAGGGCCGCTCACTGCTGCGACGGGATAC
CGAGTCACAGCAGTTCAAGATGAAGGGACGGGAGAAGCTACAGCGGCCAG
GAATTTCCCCGTCCACCACAGGGCTGCATCAGAACCAGCCGACACGAGAC
CAGGACTTCCAACAGGAGTGGGCCCGATGATCGACGTCCGGAGCGGTGAA
GCTAGAGATCCATATCTCGCAGGTATAACCGCATATGACCAGGGAAGAGA
CGTCCTTCGCGCCGAATTTAAAAGCCTTCCCACCCGAGTCGTTGCCCCCG
TCTTGAAAGCAGAAAAAGGAGTTTTCATAAATTCAAGCACGAGTTTTTTC
TGAAAACCAACATGCTAGACATAACCGATCATTTCGTAGGACAGGGTATG
CGAGCGGTCCCAGTAGGGGACCCACTCAAGCAAAAGGCTGTGCTGTTGCA
GGAAGGTTTCTCGAATGAGGAAATTAAGGGGGCATACCAAGCGTGGAATT
TCATAGATGCTGCTCTACAGAGTGACTCGGACCGATCCATACTAAAAAGA
TGCAGATCACCACGAGAAGTTTTTGAGCGCCTTGAAAATGGCATGACCCT
GATAGCGAAGTGGCAACGCAACGATTGTACGACAAGTTTCACGAGTTTAC
GATCCCACCCCACAGCGACCCCATCGCCGCACTTCATGACCTCGAGGATA
CAAATAACCAGATGCATGAGAAGGGGATCGGACGGATCCCTGATGCAGTG
GTGCACGCACGTTTCGTCCGCGCGCTGCCCGACGAGTATTCCCTCGTCAA
AGAAACGCTACAGGCGATGAAAAATCGAGATCGGGACGAGATCATCCGCA
TGGTCAGCACTCGCCACTCCAACCTGCCTCGAAAGAATGGGGCACAGCGA
TCTTCCAGACAGCCTGAGCAAGCGTTCGTCTCCAACGAAAGCGGCAACCG
CAGCGGTGCGCGACGAGGTCGTGACCGCAGGGGCGGGGGGAGACAGGGCC
GTGGCCGAAGTGGAAACAACGGCGGCGGGGCAAGTAGTTCTGTTGGAACC
CAGCGGAGCGGCGATAGTAGTCCAGTTGAGACCCAGGGGAGCAGCGATGG
TGCAGGCAGCCTTGGCGGCAGCGGTGACGGTCGCCACCACATCCCCTCTG
GCCGCTGTTTCCGCTGCAGACAGAGAGGCCACAGGAGGCAAGACTGCACG
ACGAGGAGAGCGACTTCGTACCCAGATGTAACAGGTGCACAGGTTACGGT
CATGAGGAGAGTTCCTGCTCATCGGACGCGGCAATACTTGTGGTGGAGCT
GCCGGTACCCGAAGAAGACCTCGCCGTGGAAGCCCAGGCGTTCGCGGTTT
CGGAGGCAGGCAAGTGCAGTGTGACGATTGGCGATGCAGTAGGGGGTGGC
GTTGGACAAGCAGGTCGTGCAGTACATCGCTGATAGCGCGGCAACATGCA
ATATGACGCCGGACGCCGACGGTCTAACCAACTACCGAGAGTGTAGCAGA
CCTCTCGGTCTTGCAAACGGGGAGGAAATTTCTATCGTAGGGTATGGTGA
CCTTACGGTAAATTTCCGCACCGACCACAGATGGGTACGCGTTAAAATGA
ACGACGTAGCCCATGTTCCCCAGTTGAGCCACAATCTCATCTCGCTCCCG
TCAATGACACTGAAAGGTCACACATACATGGGTGACAAAGGTGGAGTAAC
TCTCAAGCTCAAAGGGGAGAAACCGTATTTTTCCCCTGGTCGGTAAGCTT
TGCCGTCAGTACGGGTTCCGCCCGGAGGCGGCAGGTAGTATGGTAGACAG
TGCTTGTACCACAATCGCGCCGGGGAAGACGAAAACCCCACCACCCCCAC
CGATATCAACATCCTGCACTGCACGTCCGGCCACACTCACGAGGTACTGC
TCAAGAAGGAGCAGCAGGGAGTCAACCCCAGCGGGGAACTTCACGAGTGC
CGGGGATGTTCGATGGCAAGGGGGCGGAAGTCCATCGCGAGGTCGACGCA
CACCGGAGCAGATACCCTCCGTCTCTCCCGCACTCCCGCGGCAGCTGCCC
CCTATTGTCAAAGAGGGGGAGTCTACAGCGGGGAGGGCGCGAGCGGAGAG
GGGGCGTCAAATCAAGGCGGAAGGAGGGTGCAAGGCGTGGACAGCGAGTT
CAGCCTCGGCAACGCAGCGGAGGTGTGGCCCCCGGTGTTACCCGCAACGC
GCGAGGCGCTAGCGGCAGAATTAGGAGCCGGGGCAGCGGGGGTGCGGAAG
GCAACCCCCAACACCATCGGCCTCCCCGGGAGGGGAGCGCCAGCGGCAGA
ATCAGGAGCCGGGGCAGCGGGGGTGCGGAAGACGACACCCCGACACCATC
GGTCCCCCCCGGGAGGAGGCGCCAGCGGCAGAATTAGGAGCCGGGGCAGC
GGGGGCGCGGAAGGCGACACCCCGACACCATCGGCCCCCTCAGGAGGAGG
CGCCAGCGGCAGAATTAGGAGCCGGGGCAGCGGGGGTGCGGAAGGCAACC
CCCAAACACCATCGGCCTCCCCGGGAGGAGAGCGCCAGCGGCAGAATTAG
GAGCCGGGGCAGCGGGGGCGCGGAAGGCGACACCCCGACACCATCGGCCC
CCTCAGGAGGGGAGGCGCCAGCGGCAGAATTTGCAGCCGCGGCCACGGGG
TGCGGACGGCAACCCCTCGACACCAGCGGTTTCCCCGGGAGGGGAGCCGC
CAGCGGCAAAATTTGCAGCCGCGGCCACGGGGGTGCGGATGGCAACCCCT
CGACGCCAGCGGTTTCCCCCGGGAGGGGAGGCGCCAGCGGCAAAATTTGC
AGCCGCGGCCACGGGGGTGCGGATGGCAACCCCTCGACACCAGCGGTTTC
CCCCGGGAGGGGAGGCGCCAGCGGCAAAATATGTAGCCGCGGCCACGGGG
TGTGGGAAGGTAACCCCGACACCATCGGTCCCCCCGGGAGGGCCGATTTC
GGTGGCATCAACGGCAACAGTAGCAGCTACAGCAGCGAGGACAGCCGTAC
CAGCAGCGACAGCAGCAGCGGCAACGACGGTGGAGACTTTCCCACCCACG
CGAGGAGACCTGCGCGGGACCTGGAGGCCTTCGGCGAGCTCCCCGTACTA
CAGAGCGGCCACACGAGGTCTCAGTCGCGGGGCTCGGCCATGGGAGCGTC
CTGCGCGGACGACCTGTTGGCGTACGCCATGAGGGCCATGGAAGCCGAGA
AGCCCACGGAGGAGAAGGCCGCGGAGGTCGAACGAGCTCACGACTCCCTG
CTGGAAGAGCAACTGGAGAAGGAACGTGAGTGGCTCGAGAAACTCGAGGG
GCGTGGTATCGGGCCTAGGGCTAGAGATGTACGCGGATGCCGAGTAGGCC
GACAAGGAAAATGATAGGCGTTCGATGTCCGCGATAGCAGTAATTTTGGA
ATGTACTGTTGTAAGCCACGCGAAAAAGAGTACATTACGGCTGGGGACTG
GGTAAAGGAATATCTGCCTGCGCATGCCGTTCTGTTTTTTATTGTGCCCG
AGACTAGCGGGGCAAGTATTAAGGTCCTCGAGGACAACGAGGGGAGCTAA
AGCGCTGATTAACAACGCCCCTGAGCTCAGTTAGGAGCAAGCACATCGAC
ACGCGTGATCTATTCAGGAAACGAAAAATCAGCGTAGAGTATGTAGCGTC
GGCTGAGTAGCACGATGACATATTCACCAGGGCCCTCAGTAGGGCAAATT
TCAGGTACCACCGTAAGCATTTGATGAACCTTGCGGAATGAGGTACTATA
GCGCTGGGTGAGAGAATTCAAGCAGCCAGTGTACTAACACGTCACCCGAG
GCAGGTAGGCCTAGGACCAGCTAGTGACGGAGTTGTCTCTGACAACGTCC
CGTGCACCACGATGCGATCCTCGGATGGCAAGTAGGCTTAGGGTGTGTAA
CTCGCGTGGATGACACTTGGCTCGCTTTGATCCCCTTGCTTTGGAAGCGC
GACCGTTGGAATCCTGTGTGATAGCAGCGGTTATTTCACTTTTGGACGCG
CGGGGTTTTTGATCGGCAGGGCCGGTTTTCCCCACGCACCGTTTCTGCGA
CTCTAGGTATGACCTTGGGGTGTAGCTATATTCCCCACTTGATGGTTAGA
CACTTGCGTGGATAACCGAGGAGGGTGTTCGTACAGGGTAATGAATGTAC
GTAGGTCATATTTGCGGATCCGGTTCAACACATCTTGGACCAATCACGTA
AGGGCATGTGGAGAGGTGTAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig83:431249..438369-

>mRNA_A-nodosum_M_contig83.43.1 ID=mRNA_A-nodosum_M_contig83.43.1|Name=mRNA_A-nodosum_M_contig83.43.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=144bp|location=Sequence derived from alignment at A-nodosum_M_contig83:431249..438369- (Ascophyllum nodosum dioecious)
ATGGCTGCCGGTGGGTCATCTTCCTGCGCCGTTCTGGTCGACGGCTTCAT
CAAGTGCTGGGTAATGAATGTACGTAGGTCATATTTGCGGATCCGGTTCA
ACACATCTTGGACCAATCACGTAAGGGCATGTGGAGAGGTGTAG
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