mRNA_A-nodosum_M_contig83.28.2 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig83.28.2
Unique NamemRNA_A-nodosum_M_contig83.28.2
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
BLAST of mRNA_A-nodosum_M_contig83.28.2 vs. uniprot
Match: D8LEJ9_ECTSI (Hydroxymethylglutaryl-CoA synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEJ9_ECTSI)

HSP 1 Score: 666 bits (1719), Expect = 3.190e-234
Identity = 347/483 (71.84%), Postives = 387/483 (80.12%), Query Frame = 2
Query:  137 LVMVTSYCASPEHQSELEKADGCDGKYTVGLGQNRLAFVDDREDINSVLMTAMQGLLEKYDIEPATIGRLEVGTETLLDKSKSAKTWLMPLLGEGNTDVEGVTSYNACYGGSAALFNSVAWVESSAWDGRFALVVCGDIAVYEAGPARPTGGCGAVAMLIGPGAPLVLEPGLRRSSHSRDVYDFYKPKHSEYAEVDGRLSQSVYLESVDKCYGGLKNKGA----RYCGGHGGTNSNAP--PAASLTLESFDFVSLHSPYNKLVQKGLARMSFIDYRADPSSGRFKDFHAAEGGDSGSAGRERWVKVKLEETYTDRELDAAFRKVSAPDFKARCLPTCHVSREVGNCYTASVFAGLVSVVAEKGASLEENGGARVLMFSYGSGFVATAYSIKARKPSAGSSAFSLGAMQKAMNIRERLDDRMQRTPKEFALASLLAAMDLREERFGKAGFQPTGETGSLFPGTFYLAEVNDKYHRRYARTSPSA 1567
            L M   +  S   QS+LEK DGC+GKYTVGLGQN+LAFVDDREDINSVLMT MQ LLEKYDI+PA IGRLEVGTETLLDKSKSAKTWLMPLLGE NTDVEGVTSYNACYGGSAALFNSVAWVESS WDGR+ALVVCGDIAVYEAGPARPTGGCGAVAML+GP APLVLEPGLR S+HSRD YDFYKPKHSEYAEVDGRLSQSVYLESVDKCY G + K A    R     G T S     P A++T++SFDFVSLH+PYNKLVQKG ARMSF+D+R+DPS+  F+D  AA          E W  V+L  TY DRE+DAAFRK SA +FKARCLP   VSREVGNCYTASVFAGLVSVVA+KG +LE+ GGARV MFSYGSGF+ATAYS KAR+ +     FSLG MQKAM I++RL +R+ R P++FA      AM+LRE+ +GKAG+ P+G T +LFPGTFYL EVNDKYHR Y R  P A
Sbjct:   33 LAMDMYFPRSYVEQSDLEKTDGCEGKYTVGLGQNKLAFVDDREDINSVLMTVMQSLLEKYDIDPAKIGRLEVGTETLLDKSKSAKTWLMPLLGESNTDVEGVTSYNACYGGSAALFNSVAWVESSEWDGRYALVVCGDIAVYEAGPARPTGGCGAVAMLVGPDAPLVLEPGLR-STHSRDAYDFYKPKHSEYAEVDGRLSQSVYLESVDKCYAGFRAKAAARQERLAASSGVTQSGGATTPPAAVTVDSFDFVSLHAPYNKLVQKGFARMSFLDFRSDPSAEGFRDLPAAAA--------EGWRTVELGGTYADREIDAAFRKASAGEFKARCLPASTVSREVGNCYTASVFAGLVSVVADKGTALEDGGGARVFMFSYGSGFIATAYSFKARRSTTCRGQFSLGGMQKAMAIKDRLANRLGRRPEDFA-----QAMNLREQTYGKAGYTPSGATDALFPGTFYLTEVNDKYHRSYERVPPQA 501          
BLAST of mRNA_A-nodosum_M_contig83.28.2 vs. uniprot
Match: A0A6H5JY59_9PHAE (Hydroxymethylglutaryl-CoA synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY59_9PHAE)

HSP 1 Score: 639 bits (1649), Expect = 6.010e-224
Identity = 337/481 (70.06%), Postives = 379/481 (78.79%), Query Frame = 2
Query:  170 EHQSELEKADGCDGKYTVGLGQNRLAFVDDREDINSVLMTAMQGLLEKYDIEPATIGRLEVG-----TETLLDKSKSAKTWLMPLLGEGNTDVEGVTSYNACYGGSAALFNSVAWVESSAWDGRFALVVCGDIAVYEAGPARPTGGCGAVAMLIGPGAPLVLEPGLRRSSHSRDVYDFYKPKHSEYAEVDGRLSQSVYLESVDKCYGGLKNKGARY---CGGHGGTNSNA--PPAASLTLESFDFVSLHSPYNKLVQKGLARMSFIDYRADPSSGRFKDFHAAEGGDSGSAGRERWVKVKLEETYTDRELDAAFRKVSAPDFKARCLPTCHVSREVGNCYTASVFAGLVSVVAEKGASLEENGGARVLMFSYGSGFVATAYSIKARKPSAGSSAFSLGAMQKAMNIRERLDDRMQRTPKEFALAS----------LLAAMDLREERFGKAGFQPTGETGSLFPGTFYLAEVNDKYHRRYAR 1552
            + QS+LEK DGC+GKYT+GLGQN+LAFVDDREDINSVLMT MQ LLEKYDI+PA IGRLEVG     TETLLDKSKSAKTWLMPLLG  NTDVEGVTSYNACYGGSAALFNSVAWVESS WDGR+ALVVCGDIAVYEAGPARPTGGCGAVAML+GP APLVLEPGLR S+HSRD YDFYKPKHSEYAEVDGRLSQSVYLESVDKCY G K K A         G T S     P A++T++SFDFVSLH+PYNKLVQKG ARMSF+D+R+DPS+  F+D  AA          E W  V+L  TY DRE++AAFRK SA DFKARCLP   VSREVGNCYTASVFAGLVSVVA+KG +LE+ GGARV MFSYGSGF+ATAYS KAR+P+     FSLG MQ+AM I++RL  R+ RTP++FA AS          +  AM+LRE+ +GKAG+ P+G   +LFPGTFYL EV      +YAR
Sbjct:    6 QRQSDLEKTDGCEGKYTIGLGQNKLAFVDDREDINSVLMTVMQSLLEKYDIDPAKIGRLEVGKEWVGTETLLDKSKSAKTWLMPLLGASNTDVEGVTSYNACYGGSAALFNSVAWVESSEWDGRYALVVCGDIAVYEAGPARPTGGCGAVAMLVGPDAPLVLEPGLR-STHSRDAYDFYKPKHSEYAEVDGRLSQSVYLESVDKCYAGFKAKAAARQDRLAASGVTQSGGVTTPPATVTVDSFDFVSLHAPYNKLVQKGFARMSFLDFRSDPSAEGFRDLPAAAA--------EGWRTVELGGTYADREIEAAFRKASAGDFKARCLPASTVSREVGNCYTASVFAGLVSVVADKGTALEDGGGARVFMFSYGSGFIATAYSFKARRPTTCRGQFSLGGMQEAMGIKDRLARRLGRTPEDFAQASRPFGGHSFYDVTTAMNLREQTYGKAGYTPSGAADALFPGTFYLTEVRRCVRGKYAR 477          
BLAST of mRNA_A-nodosum_M_contig83.28.2 vs. uniprot
Match: A0A7S2WPZ4_9STRA (Hydroxymethylglutaryl-CoA synthase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WPZ4_9STRA)

HSP 1 Score: 442 bits (1138), Expect = 4.190e-147
Identity = 248/459 (54.03%), Postives = 306/459 (66.67%), Query Frame = 2
Query:  176 QSELEKADGCDGKYTVGLGQNRLAFVDDREDINSVLMTAMQGLLEKYDIEPATIGRLEVGTETLLDKSKSAKTWLMPLLGEGNTDVEGVTSYNACYGGSAALFNSVAWVESSAWDGRFALVVCGDIAVYEAGPARPTGGCGAVAMLIGPGAPLVLEPGLRRSSHSRDVYDFYKPKHSEYAEVDGRLSQSVYLESVDKCYGGLKNKGARYCGGHGGTNSNAPPAASLTLESFDFVSLHSPYNKLVQKGLARMSFIDYRADPSSGRFKDFHAAEGGDSGSAGRERWVKVKLEETYTDRELDAAFRKVSAPDFKARCLPTCHVSREVGNCYTASVFAGLVSVVAEKGASLEENGGARVLMFSYGSGFVATAYSIKARKPSAGSSAFSLGAMQKAMNIRERLDDRMQRTPKEFALASLLAAMDLREERFGKAGFQPTGETGSLFPGTFYLAEVNDKYHRRYAR 1552
            Q+ LE  DGC GKYT GLGQNRLAFV DREDI SVLMTA+Q LLE++ ++PA +GRLEVGTE+L+DKSKS KT LM L GE N D+EGVTS NACYGG+AAL NSVAWV+S  WDGR A+ V GDIAVYEAGPARPT GCGAVAMLIGP APL LEPGLR +SH  D YDFYKP HSEY  VDG+LSQ+ YL  VD CY G K K AR                 +T++SFD+V +HSPY+KLVQKG AR  ++D+  DP+   F +     G            KV    +   RE+DAAFR+VSA  ++ + LP+  VS+EVGNCYT +VF  L+S++++ G  +    G RV MFSYGSG V++ YS + R P   S  F+L  +Q A+ +R RL +R   T +EFA      AM+ RE  +G+A  QP G    +  G F+L  VN+K+HR Y R
Sbjct:   27 QTALEAQDGCAGKYTKGLGQNRLAFVTDREDIASVLMTAVQRLLERFGVDPAHVGRLEVGTESLIDKSKSVKTSLMRLFGE-NKDIEGVTSTNACYGGTAALLNSVAWVQSEDWDGRLAICVAGDIAVYEAGPARPTSGCGAVAMLIGPDAPLALEPGLR-ASHVIDCYDFYKPHHSEYPMVDGKLSQAAYLGCVDACYRGYKAKAARR-------------GEKVTVDSFDYVCMHSPYHKLVQKGFARFLYMDFLDDPTQEGFSEVQHLSGD-----------KVDYNASLESREVDAAFREVSASSYREKILPSSFVSKEVGNCYTGAVFMNLLSLISDVGPGMV---GKRVGMFSYGSGSVSSLYSFRGRIPDTPSE-FTLERIQ-AIGVRGRLAERKSCTSEEFA-----QAMNFREAAYGQAPHQPQGSVEDVPVGAFFLESVNEKHHRSYGR 449          
BLAST of mRNA_A-nodosum_M_contig83.28.2 vs. uniprot
Match: A0A7S0NXG5_9EUKA (Hydroxymethylglutaryl-CoA synthase n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0NXG5_9EUKA)

HSP 1 Score: 433 bits (1114), Expect = 2.950e-143
Identity = 247/481 (51.35%), Postives = 320/481 (66.53%), Query Frame = 2
Query:  143 MVTSYCASPEH---QSELEKADGCDGKYTVGLGQNRLAFVDDREDINSVLMTAMQGLLEKYDIEPATIGRLEVGTETLLDKSKSAKTWLMPLLGEGNTDVEGVTSYNACYGGSAALFNSVAWVESSAWDGRFALVVCGDIAVYEAGPARPTGGCGAVAMLIGPGAPLVLEPGLRRSSHSRDVYDFYKPK-HSEYAEVDGRLSQSVYLESVDKCYGGLKNKGARYCGGHGGTNSNAPPAASLTLESFDFVSLHSPYNKLVQKGLARMSFIDYRADPSSGRFKDFHAAEGGDSGSAGRERWVKVKLEETYTDRELDAAFRKVSAPDFKARCLPTCHVSREVGNCYTASVFAGLVSVVAEKGASLEENGGARVLMFSYGSGFVATAYSIKARKPSA-------GSSAFSLGAMQKAMNIRERLDDRMQRTPKEFALASLLAAMDLREERFGKAGFQPTGETGSLFPGTFYLAEVNDKYHRRYAR 1552
            ++ + C  P++   Q+ELEKADGC+GKYTVGLGQ  LAF DDRED+ S+L+ A+  LLEK+D+ P  +GRLEVGTETL+DKSKS KT L+  L +G TD+EGV+S NACYGG+AAL NSVAWVESSAWDGR+A+VVCGDIAVY  GPARPTGG GAVAMLIG  APL L     R++H+ +VYDFYKP+  +EYA VDG+LSQ+ YL +VD C+ GLK K        GG      P   +TL+SFDFV LHSPYNKLVQKG AR+ +             DF  A   D  S   +RW ++   ET  DR+ +  F  ++ P F A+C P+  +SR VGNCYTA+V+  L+S+VA KG+ L+   G RVL+FSYGSG VATA  +  R   A         S F+LG + + ++I  RL  R  R      + +L +A++LRE R+G AG++P+G    L P ++YL+ V++ Y R YAR
Sbjct:   11 ILAAECYWPKNFVPQTELEKADGCEGKYTVGLGQTALAFFDDREDVGSILLNAVANLLEKFDVSPHDVGRLEVGTETLIDKSKSIKTLLLSCLFDGCTDIEGVSSTNACYGGTAALLNSVAWVESSAWDGRYAIVVCGDIAVYAPGPARPTGGGGAVAMLIGADAPLALVGP--RATHAVEVYDFYKPRGDTEYATVDGKLSQAAYLTAVDMCWAGLKLKLRS-----GGALYEREP--DVTLDSFDFVCLHSPYNKLVQKGFARLLY------------GDFTEAADRDEFSGDAQRWRELPAAETVNDRDAEKCFAALAKPRFAAKCAPSETISRHVGNCYTAAVYMNLLSLVAAKGSELQ---GKRVLVFSYGSGAVATALMVVGRGVEAPNGVGKAAGSTFTLGRLAETLDIDTRLAARTCRD-----VPALNSALELREARYGAAGYEPSGSLDDLAPHSWYLSGVDELYRRSYAR 462          
BLAST of mRNA_A-nodosum_M_contig83.28.2 vs. uniprot
Match: A0A0M0J637_9EUKA (Hydroxymethylglutaryl-CoA synthase n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0J637_9EUKA)

HSP 1 Score: 427 bits (1097), Expect = 1.530e-140
Identity = 247/484 (51.03%), Postives = 312/484 (64.46%), Query Frame = 2
Query:  137 LVMVTSYCASPEHQSELEKADGCDGKYTVGLGQNRLAFVDDREDINSVLMTAMQGLLEKYDIEPATIGRLEVGTETLLDKSKSAKTWLMPLLGEGNTDVEGVTSYNACYGGSAALFNSVAWVESSAWDGRFALVVCGDIAVYEAGPARPTGGCGAVAMLIGPGAPLVLEPGLRRSSHSRDVYDFYKPK-HSEYAEVDGRLSQSVYLESVDKCYGGLKNKGARYCGGHGGTNSNAPPAASLTLESFDFVSLHSPYNKLVQKGLARMSFIDYRADPSSGRFKDFHAAEGGDSGSAGRERWVKVKLEETYTDRELDAAFRKVSAPDFKARCLPTCHVSREVGNCYTASVFAGLVSVVAEKGASLEENGGARVLMFSYGSGFVATAYSIKARKPS-----AGSSA-----FSLGAMQKAMNIRERLDDRMQRTPKEFALASLLAAMDLREERFGKAGFQPTGETGSLFPGTFYLAEVNDKYHRRYART 1555
            L M   +  +   Q+ LE+ADGC GKYT+GLGQ  L + DDRED+ S+L+TA+  L+E Y IEP  IGRLEVGTETL+DKSKS KT L+  L   N DVEGVTS NACYGG+AAL NSVAWVESSAWDGR+A+VVCGDIAVY  GPARPTGG GAVAMLIG  APL L     R +H+ +VYDFYKPK  +EYA VDG+LSQ  YL +VD+CY GL+ K A   GG           A  TL++F F  +HSPY KLVQKG ARM   D  A P+    +D  AA+      A  ++   V    +  DR+ +   RK+SA  + A CLP   +S  VGNCYTA+V+  L+++V+ + A L +     VL FSYGSG VATA+ IKARKPS     +G+S      F++  + +  ++  RL  R +RT  +FA     AAMDLR  R+G+A + PTG    LFPGT+YL  V+ ++ R Y+RT
Sbjct:   21 LAMEAYFPQNCLQQTALEEADGCKGKYTIGLGQESLGYFDDREDVASILLTALARLMENYGIEPQQIGRLEVGTETLIDKSKSVKTTLLAHLFGPNADVEGVTSTNACYGGTAALLNSVAWVESSAWDGRYAVVVCGDIAVYAPGPARPTGGGGAVAMLIGADAPLALSGP--RCTHAAEVYDFYKPKGDTEYATVDGKLSQEAYLTAVDRCYAGLQAKRAAAVGG-----------APCTLDAFGFACMHSPYAKLVQKGFARMLLADVIAQPT----RDEWAAD------ADAQKVAAVPPAHSVNDRDTETVLRKLSATRYDAMCLPAGGISTRVGNCYTAAVYMNLLALVSSRAAELVDKE-PDVLCFSYGSGAVATAFVIKARKPSGTNALSGASGLPPVPFTIERIAQTADVFARLASRTERTTADFA-----AAMDLRATRYGQASYSPTGPIAELFPGTYYLVSVDAEHRRSYSRT 475          
BLAST of mRNA_A-nodosum_M_contig83.28.2 vs. uniprot
Match: R1CY43_EMIHU (Hydroxymethylglutaryl-CoA synthase n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1CY43_EMIHU)

HSP 1 Score: 427 bits (1098), Expect = 1.560e-140
Identity = 255/484 (52.69%), Postives = 325/484 (67.15%), Query Frame = 2
Query:  176 QSELEKADGCDGKYTVGLGQNRLAFVDDREDINSVLMTAMQGLLEKYDIEPATIGRLEVGTETLLDKSKSAKTWLMP-LLGEGNTDVEGVTSYNACYGGSAALFNSVAWVESSAWDGRFALVVCGDIAVYEAGPARPTGGCGAVAMLIGPGAPLVLEPGLRRSSHSRDVYDFYKPK-HSEYAEVDGRLSQSVYLESVDKCYGGLKNK-GARYCGGHGGTNSNAPPAASLTLESFDFVSLHSPYNKLVQKGLARM-------------SFIDYRADPSSGRFKDFHAAE--GGDSGSAGRERWVKVKLEETYTDRELDAAFRKVSAPDFKARCLPTCHVSREVGNCYTASVFAGLVSVVAEKGASLEENGGARVLMFSYGSGFVATAYSIKARKPSAGS-------SAFSLGAMQKAMNIRERLDDRMQRTPKEFALASLLAAMDLREERFGKAGFQPTGETGSLFPGTFYLAEVNDKYHRRYAR 1552
            Q+ LE+ADGC GKYTVGLGQ  LAF DDREDI SVL+TA   LLE+Y +  + IGRLEVGTETLLDKSKS KT LM  L G  ++DVEGV+S NACYGG+AAL NSVAWVESSAWDGR+ALVVCGDIAVY  GPARPTGG GAVAML+GP APLV+     R++H+ +VYDFYKP+  +EYA VDG+LSQ  YL SVD C+  LK K GA       G N +  PA    L +FD+V +HSPYNKLVQKG AR+             S +      + G F D   A    GD+     +RW  V   +T  DRE +  F  ++ PDF+A+C P+   SR+VGNCYTA+++  L+S+V+ K +SL    GAR+L+FSYGSG VATA+++  R+PS GS       S F+L  +     + ERL     RT  +  L +L  A++LREER+G+AG++P+G+ G+L PGT+YLA V++ + R Y+R
Sbjct:   24 QTALEEADGCAGKYTVGLGQTALAFFDDREDIASVLLTACARLLERYGVPASAIGRLEVGTETLLDKSKSVKTTLMAQLFGAEHSDVEGVSSTNACYGGTAALLNSVAWVESSAWDGRYALVVCGDIAVYAPGPARPTGGGGAVAMLVGPDAPLVMAGP--RATHAFEVYDFYKPRGDTEYATVDGKLSQDAYLASVDTCWSRLKAKLGAPAAAEQLGLNGS--PA---DLRAFDYVCMHSPYNKLVQKGFARLLYGTAALGQPSATSVLTLSRRAAVGDFADDATAPRFAGDA-----QRWAGVPPAKTVGDREAEKCFVGLAKPDFEAKCAPSDTASRQVGNCYTAALYMNLLSLVSAKASSLM---GARLLLFSYGSGAVATAFTLIGREPSGGSALALPPASPFTLERIATTAQLAERLT---ARTCSD--LPTLTRALELREERYGQAGYEPSGDVGALAPGTYYLAAVDELHRRTYSR 487          
BLAST of mRNA_A-nodosum_M_contig83.28.2 vs. uniprot
Match: A0A7S2AZ79_9STRA (Hydroxymethylglutaryl-CoA synthase (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AZ79_9STRA)

HSP 1 Score: 425 bits (1092), Expect = 9.560e-140
Identity = 243/469 (51.81%), Postives = 309/469 (65.88%), Query Frame = 2
Query:  176 QSELEKADGCDGKYTVGLGQNRLAFVDDREDINSVLMTAMQGLLEKYDIEPATIGRLEVGTETLLDKSKSAKTWLMPLLGEGNTDVEGVTSYNACYGGSAALFNSVAWVESSAWDGRFALVVCGDIAVYEAGPARPTGGCGAVAMLIGPGAPLVLEPGLRRSSHSRDVYDFYKPKHSEYAEVDGRLSQSVYLESVDKCYGGLKNKGARYCGGHGGTNSNAPPAASLTLESFDFVSLHSPYNKLVQKGLARMSFIDYRADPSSGRFKDFHAAEGGDSGSAGRERWVKVKLEETYTDRELDAAFRKVSAPDFKARCLPTCHVSREVGNCYTASVFAGLVSVVAEKGASLEENG--GARVLMFSYGSGFVATAYSIKARKPSAGSSAFSLGAMQKAMNIRERLDDRMQRTPKEFALASLLAAMDLREERFGKAGFQPTGETGSLFPGTFYLAEVNDKYHRRYARTSPSAVPP 1576
            Q+ LE  D C GKYT GLGQ RLAFV DREDI SV++TA+  LLE+Y I P  +GRLEVGTETL+DKSKS KT LM LLG+ N DVEGV+S NACYGG+AALFNSVAWV+S  WDGR+A+V+ GDIAVYEAGPARPT GCG VAML+G  APL +EP +R +SH+ D YDFYKP HSEYA VDG LSQ  YL  VD CY   K K                   S+ +  FDF+  HSPY+KLVQKG AR+ + D+ + P S RF+     E  D  S    ++  +  E++   RELDA FR ++  DF  +  P+   S++VGNCYT +VF  L S+V+    ++E +G  G R+ MFSYGSG VA+ Y++KAR+ + G++ FSL  +++ + + ERL+ R Q T +EF      AAMDLR E +GKA   P+G T SL  GTFYL  +++ + R Y R    AV P
Sbjct:   34 QTLLEVQDDCAGKYTKGLGQERLAFVTDREDITSVMLTALSRLLERYSITPEQVGRLEVGTETLIDKSKSVKTALMQLLGD-NGDVEGVSSTNACYGGTAALFNSVAWVQSEDWDGRYAVVLAGDIAVYEAGPARPTSGCGVVAMLVGSDAPLAMEPKVR-ASHAMDCYDFYKPNHSEYALVDGGLSQKAYLRCVDLCYNRFKAKAKVVL-----------KLESVEMNVFDFMCFHSPYHKLVQKGFARLGYQDFLSAPDSLRFR-----EAADQLS----QFSDLTDEDSLVSRELDAVFRGITKNDFARKVTPSSFTSQQVGNCYTGAVFMNLASLVS----AVESDGLVGKRIGMFSYGSGSVASLYALKARETTTGNN-FSLQRIRETLALEERLNSRTQMTAEEFG-----AAMDLRAEAYGKAPLVPSGSTASLKEGTFYLERIDELHRRSYGRKG--AVEP 468          
BLAST of mRNA_A-nodosum_M_contig83.28.2 vs. uniprot
Match: F0XWE9_AURAN (Hydroxymethylglutaryl-CoA synthase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XWE9_AURAN)

HSP 1 Score: 419 bits (1078), Expect = 5.150e-138
Identity = 244/464 (52.59%), Postives = 310/464 (66.81%), Query Frame = 2
Query:  176 QSELEKADGCDGKYTVGLGQNRLAFVDDREDINSVLMTAMQGLLEKYDIEPATIGRLEVGTETLLDKSKSAKTWLMPLLGEGNTDVEGVTSYNACYGGSAALFNSVAWVESSAWDGRFALVVCGDIAVYEAGPARPTGGCGAVAMLIGPGAPLVLEPGLRRSSHSRDVYDFYKPKHSEYAEVDGRLSQSVYLESVDKCYGGLKNKGARYCGGHGGTNSNAPPAASLTLESFDFVSLHSPYNKLVQKGLARMSFIDYRADPSSGRFKDFHAAEGGDSGSAGRERWVKVKLEETYTDRELDAAFRKVSAPDFKARCLPTCHVSREVGNCYTASVFAGLVSVVAEKGASLEENGGARVLMFSYGSGFVATAYSIKARKPSAGSSAFSLGAMQKAMNIRERLDDRMQRTPKEFALASLLAAMDLREERFGKAGFQPTG--ETGSLFP-----GTFYLAEVNDKYHRRY 1546
            Q+ LE+ DGC GKY VGLGQ  +AFVDDREDI SVL+TA + LL  + + PA +GRLEVGTETL+DKSKS KT L+ L G+ + DVEGV+S NACYGG+AAL N+ AWVESSAWDG++A+VVCGDIAVYE GPARP+GGCGAVA+L+GPGAPL LEP   R++H+ DV+DFYKP HSE+A VDG+LSQ+ YL SVD C+ GLK K              AP  A+ TL++FD    H+PYNKLVQKG AR++  D   D  +GR  D  AA+   +G+A          E +  DR LDAA RK SA  + A+  P   + +++GN YTASVFAGL+S+VA++G +L    G RVL+FSYGSG VAT Y+ K R+  A  + F+LG  ++  ++  RL  R   +   FA      A D+R ER+GK G+ PTG  ET    P       F LA V+DK+ R Y
Sbjct:   26 QTSLEEQDGCGGKYVVGLGQEAMAFVDDREDIGSVLLTACRRLLTGFGVAPADVGRLEVGTETLVDKSKSVKTTLLQLFGD-HRDVEGVSSVNACYGGTAALLNACAWVESSAWDGKYAVVVCGDIAVYEPGPARPSGGCGAVALLVGPGAPLALEPA--RATHAMDVWDFYKPHHSEFAAVDGKLSQACYLRSVDGCWAGLKRK--------------AP--AATTLDAFDHCVFHAPYNKLVQKGFARLALGD---DVLAGRVADPPAADWCAAGAA--------PYEASLADRGLDAALRKASAGAYDAKVAPATLIPKQIGNTYTASVFAGLLSLVADRGDALA---GKRVLLFSYGSGSVATMYAFKGRE--ADDAKFALGETRRVADVPARLAARAPCSAAHFA-----RACDVRVERYGKPGYAPTGAAETDGAAPVPLAADAFALAAVDDKHIRSY 449          
BLAST of mRNA_A-nodosum_M_contig83.28.2 vs. uniprot
Match: A0A7S2NK23_9EUKA (Hydroxymethylglutaryl-CoA synthase n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2NK23_9EUKA)

HSP 1 Score: 417 bits (1073), Expect = 2.430e-136
Identity = 241/467 (51.61%), Postives = 301/467 (64.45%), Query Frame = 2
Query:  176 QSELEKADGCDGKYTVGLGQNRLAFVDDREDINSVLMTAMQGLLEKYDIEPATIGRLEVGTETLLDKSKSAKTWLMPLLGEGNTDVEGVTSYNACYGGSAALFNSVAWVESSAWDGRFALVVCGDIAVYEAGPARPTGGCGAVAMLIGPGAPLVLEPGLRRSSHSRDVYDFYKPK-HSEYAEVDGRLSQSVYLESVDKCYGGLKNKGARYCGGHGGTNSNAPPAASLTLESFDFVSLHSPYNKLVQKGLARMSFIDYRADPSSGRFKDFHAAEGGDSGSAGRERWVKVKLEETYTDRELDAAFRKVSAPDFKARCLPTCHVSREVGNCYTASVFAGLVSVVAEKGASLEENGGARVLMFSYGSGFVATAYSIKARKPS------AGSSAFSLGAMQKAMNIRERLDDRMQRTPKEFALASLLAAMDLREERFGKAGFQPTGETGSLFPGTFYLAEVNDKYHRRYART 1555
            Q+ LE  DGC GKYTVGLGQ +LA+ DDRED+ SVL+ A+  L+E Y I+P  +GRLEVGTETL+DKSKS KT L+  L  G  D+EGVTS NACYGG+AAL NSVAWVESSAWDGR+A+VVCGDIAVYEAGPARPTGG GAVAMLIGP APL +     R SH+ +VYDFYKP+  SEYA VDG+LSQ  YL++VD+CY GL  K            + A  A   TL+SF F  +HSPY KLVQKG  RM    Y AD + G     H +E  +S  A  +  +     ET  DR  +   R +S   +     P+  +++ VGNCYT +V+  L+S+V+   A L      RVLMFSYGSG VATA+ I+AR PS      AG   F+   + +  +I  RL  R +RT  EF      AAMDLR  R+G  G++P+G   +LFPG++YL +V+D + R YART
Sbjct:   77 QTALEAQDGCAGKYTVGLGQEKLAYFDDREDVASVLLNALVRLMEGYGIQPEQVGRLEVGTETLVDKSKSVKTTLLAQLFSGCADIEGVTSINACYGGTAALLNSVAWVESSAWDGRYAIVVCGDIAVYEAGPARPTGGGGAVAMLIGPNAPLAVSGP--RCSHAFEVYDFYKPRGDSEYAIVDGKLSQGAYLQAVDECYSGLAKK-------MDAAAAAAGSATRTTLDSFAFACMHSPYVKLVQKGFGRM----YAADMAGGA----HRSEWEESAEA--KALLACSAAETRDDRNHEKTLRSLSQSRYSKMITPSTTITKSVGNCYTGAVYMNLLSLVSSCAAELPSR---RVLMFSYGSGAVATAFCIEARTPSGTNCLTAGGEIFTCARIARVSDIEARLASRTERTVSEFN-----AAMDLRAARYGTKGYEPSGSLEALFPGSYYLDKVDDLHRRTYART 516          
BLAST of mRNA_A-nodosum_M_contig83.28.2 vs. uniprot
Match: A0A1V9YYU3_9STRA (Hydroxymethylglutaryl-CoA synthase (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YYU3_9STRA)

HSP 1 Score: 417 bits (1071), Expect = 3.110e-135
Identity = 236/494 (47.77%), Postives = 315/494 (63.77%), Query Frame = 2
Query:  104 SKRNRMFGMHCLVMVTSYCASPEHQSELEKADGCD-GKYTVGLGQNRLAFVDDREDINSVLMTAMQGLLEKYDIEPATIGRLEVGTETLLDKSKSAKTWLMPLLGE-GNTDVEGVTSYNACYGGSAALFNSVAWVESSAWDGRFALVVCGDIAVYEAGPARPTGGCGAVAMLIGPGAPLVLEPGLRRSSHSRDVYDFYKPK-HSEYAEVDGRLSQSVYLESVDKCYGGLKNKGARYC--GGHGGTNSNAPPAASLTLESFDFVSLHSPYNKLVQKGLARMSFIDYRADPSSGRFKDFHAAEGGDSGSAGRERWVKVKLEETYTDRELDAAFRKVSAPDFKARCLPTCHVSREVGNCYTASVFAGLVSVVAEKGASLEENGGARVLMFSYGSGFVATAYSIKARKPSA------GSSAFSLGAMQKAMNIRERLDDRMQRTPKEFALASLLAAMDLREERFGKAGFQPTGETGSLFPGTFYLAEVNDKYHRRYAR 1552
            +KR     +  L M   + A+   Q++LE+ DG   GKYT GL Q ++ F  DRED+NS+ +TA++ LLEKYDI P+ IGRLEVGTET++D  KS KT LM L  E GN D+EGVTS NACYGG+AALFNSVAWVES AWDGR+ALVVCGDIAVY  GPARPT GCGAVAMLIGP APLV+E  LR ++ S +++DFYKP  HSEY  VDG+ SQS YL+++D CY        R+C    H G   N        + + D+V  HSPYNKL QKG +R+ F D+  +P+  +++               ++W    LE+TY DR+LDAA RKVS   +     P+C  SR +GNCYTASV+  L  ++      L    G R+++FSYGSG V + +S +  +PS       G+  F++  M +++N+  RL+ RM+RTP+EF      A +DLRE+  G   ++P     +LFPGT+YL E++DK+ R+YAR
Sbjct:   75 NKRALAENVGILGMEVYFPANYIDQADLEQYDGVSAGKYTKGLAQEKMCFTGDREDVNSIALTAVKNLLEKYDIHPSQIGRLEVGTETMVDACKSTKTVLMDLFHEHGNYDLEGVTSVNACYGGTAALFNSVAWVESRAWDGRYALVVCGDIAVYAKGPARPTCGCGAVAMLIGPNAPLVMESELR-TTFSENMWDFYKPDPHSEYPTVDGKFSQSCYLKTLDDCY-------RRFCIKNEHAGVTKNGK---YFDVSANDYVIFHSPYNKLAQKGFSRIIFNDFLRNPTLPQYEPL-------------KKWHGASLEDTYYDRDLDAASRKVSLDMWNRMVEPSCFASRAIGNCYTASVYINLACLIDTARTQLH---GKRIMLFSYGSGAVGSIFSFRVPRPSERQPLDNGAVPFTVERMSESLNLVRRLETRMKRTPEEFN-----AHLDLREKSHGLKSYKPLQSIDTLFPGTYYLVEIDDKHRRKYAR 536          
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig83.28.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEJ9_ECTSI3.190e-23471.84Hydroxymethylglutaryl-CoA synthase n=1 Tax=Ectocar... [more]
A0A6H5JY59_9PHAE6.010e-22470.06Hydroxymethylglutaryl-CoA synthase n=1 Tax=Ectocar... [more]
A0A7S2WPZ4_9STRA4.190e-14754.03Hydroxymethylglutaryl-CoA synthase n=1 Tax=Rhizoch... [more]
A0A7S0NXG5_9EUKA2.950e-14351.35Hydroxymethylglutaryl-CoA synthase n=1 Tax=Calcidi... [more]
A0A0M0J637_9EUKA1.530e-14051.03Hydroxymethylglutaryl-CoA synthase n=1 Tax=Chrysoc... [more]
R1CY43_EMIHU1.560e-14052.69Hydroxymethylglutaryl-CoA synthase n=2 Tax=Emilian... [more]
A0A7S2AZ79_9STRA9.560e-14051.81Hydroxymethylglutaryl-CoA synthase (Fragment) n=1 ... [more]
F0XWE9_AURAN5.150e-13852.59Hydroxymethylglutaryl-CoA synthase n=1 Tax=Aureoco... [more]
A0A7S2NK23_9EUKA2.430e-13651.61Hydroxymethylglutaryl-CoA synthase n=1 Tax=Haptoli... [more]
A0A1V9YYU3_9STRA3.110e-13547.77Hydroxymethylglutaryl-CoA synthase (Fragment) n=1 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig83contigA-nodosum_M_contig83:297992..308672 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LEJ9
Preferred nameHMGS2
PFAMsHMG_CoA_synt_C,HMG_CoA_synt_N
Model size1906
Max annot lvl2759|Eukaryota
KEGG rclassRC00004,RC00503
KEGG koko:K01641
KEGG ReactionR01978
KEGG Pathwayko00072,ko00280,ko00650,ko00900,ko01100,ko01110,ko01130,map00072,map00280,map00650,map00900,map01100,map01110,map01130
KEGG ModuleM00088,M00095
Hectar predicted targeting categoryother localisation
Exons12
Evalue6.37e-237
EggNOG OGsCOG3425@1|root,KOG1393@2759|Eukaryota
Ec32 ortholog descriptionHydroxymethylglutaryl-CoA synthase
Ec32 orthologEc-21_004360.1
EC2.3.3.10
Descriptionhydroxymethylglutaryl-CoA synthase activity
Cds size1467
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870171.000116-UTR-A-nodosum_M_contig83:297991..2983121680870171.000116-UTR-A-nodosum_M_contig83:297991..298312Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig83 297992..298312 -
1680870171.1516948-UTR-A-nodosum_M_contig83:308554..3086721680870171.1516948-UTR-A-nodosum_M_contig83:308554..308672Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig83 308555..308672 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870171.014394-CDS-A-nodosum_M_contig83:298312..2983781680870171.014394-CDS-A-nodosum_M_contig83:298312..298378Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig83 298313..298378 -
1680870171.028658-CDS-A-nodosum_M_contig83:299508..2996041680870171.028658-CDS-A-nodosum_M_contig83:299508..299604Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig83 299509..299604 -
1680870171.0393114-CDS-A-nodosum_M_contig83:300996..3011351680870171.0393114-CDS-A-nodosum_M_contig83:300996..301135Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig83 300997..301135 -
1680870171.0508342-CDS-A-nodosum_M_contig83:301664..3018041680870171.0508342-CDS-A-nodosum_M_contig83:301664..301804Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig83 301665..301804 -
1680870171.0651777-CDS-A-nodosum_M_contig83:302336..3025561680870171.0651777-CDS-A-nodosum_M_contig83:302336..302556Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig83 302337..302556 -
1680870171.0763316-CDS-A-nodosum_M_contig83:304171..3042921680870171.0763316-CDS-A-nodosum_M_contig83:304171..304292Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig83 304172..304292 -
1680870171.0878704-CDS-A-nodosum_M_contig83:304935..3049991680870171.0878704-CDS-A-nodosum_M_contig83:304935..304999Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig83 304936..304999 -
1680870171.0997941-CDS-A-nodosum_M_contig83:306279..3063641680870171.0997941-CDS-A-nodosum_M_contig83:306279..306364Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig83 306280..306364 -
1680870171.1095731-CDS-A-nodosum_M_contig83:306741..3068851680870171.1095731-CDS-A-nodosum_M_contig83:306741..306885Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig83 306742..306885 -
1680870171.1196-CDS-A-nodosum_M_contig83:307194..3073551680870171.1196-CDS-A-nodosum_M_contig83:307194..307355Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig83 307195..307355 -
1680870171.1326036-CDS-A-nodosum_M_contig83:307768..3078561680870171.1326036-CDS-A-nodosum_M_contig83:307768..307856Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig83 307769..307856 -
1680870171.1423862-CDS-A-nodosum_M_contig83:308411..3085541680870171.1423862-CDS-A-nodosum_M_contig83:308411..308554Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig83 308412..308554 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig83.28.2prot_A-nodosum_M_contig83.28.2Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig83 298313..308554 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig83.28.2

>prot_A-nodosum_M_contig83.28.2 ID=prot_A-nodosum_M_contig83.28.2|Name=mRNA_A-nodosum_M_contig83.28.2|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=489bp
MFGMHCLVMVTSYCASPEHQSELEKADGCDGKYTVGLGQNRLAFVDDRED
INSVLMTAMQGLLEKYDIEPATIGRLEVGTETLLDKSKSAKTWLMPLLGE
GNTDVEGVTSYNACYGGSAALFNSVAWVESSAWDGRFALVVCGDIAVYEA
GPARPTGGCGAVAMLIGPGAPLVLEPGLRRSSHSRDVYDFYKPKHSEYAE
VDGRLSQSVYLESVDKCYGGLKNKGARYCGGHGGTNSNAPPAASLTLESF
DFVSLHSPYNKLVQKGLARMSFIDYRADPSSGRFKDFHAAEGGDSGSAGR
ERWVKVKLEETYTDRELDAAFRKVSAPDFKARCLPTCHVSREVGNCYTAS
VFAGLVSVVAEKGASLEENGGARVLMFSYGSGFVATAYSIKARKPSAGSS
AFSLGAMQKAMNIRERLDDRMQRTPKEFALASLLAAMDLREERFGKAGFQ
PTGETGSLFPGTFYLAEVNDKYHRRYARTSPSAVPPTT*
back to top

mRNA from alignment at A-nodosum_M_contig83:297992..308672-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig83.28.2 ID=mRNA_A-nodosum_M_contig83.28.2|Name=mRNA_A-nodosum_M_contig83.28.2|organism=Ascophyllum nodosum dioecious|type=mRNA|length=10681bp|location=Sequence derived from alignment at A-nodosum_M_contig83:297992..308672- (Ascophyllum nodosum dioecious)
CTTCGATTATACAGCGCTGTTTTCACGTTAACCGAATGTCTCAAACCGCC CGCGAATCCTCTAGATGGTTATCTTGCCTTGCCGTTAGAATGGTTTCGCG CCCTCCAAACGAAACAGAATGTTCGGTATGCACTGCCTTGTAATGGTGAC CTCTTACTGCGCTTCGCCCGAGCATCAGTCGGAGCTAGAGAAGGCCGACG GCTGCGACGGAAAGTACACGGTTGGCCTTGGACAGAATCGCCTGGCCTTC GTCGACGATAGGTGGGGTATACTGTTGTAGCGTGACCTCGAGAAAAGGTT AGCGTGGCTGTTGTTGCTGCTGCTGCTGCTGCTGCTGCTGTCGCTAGAGA AAAGCGTCGGGGATGTTTGGCACTGGTGCGCGCAGCTGCTGCAGTTTTTT GCTCGAAGCTTCCTTCGACCTTGCTGTATGAGGGTAGTTACCTTGTGGGG ACACCTGAACTTTCCTAAACGATTGCTGCAGTGCTTGTGTTTCGCGGGCC AAGGCAAGGTTAATATCACTGCCGTGGAGATCATTTTCGTAAACCCCCCC CCACCCCCCCCCCTCCCCCGGGAGGCGTTGCATTTGTCTGAGACAAGCGA AGCCGCATCGACCCCCGCCACTCGAGAAGCGACATCACCTTCGTATGGTT CTCCCCTGTATAAAACGTATTGCCGCCTCCGTCGCTGAGGAGAACGGCCC TTTGGTCGAGATTACACCTCCCTTACAAGTCTGTAGGAACCCCCCCGCCC CCCAGCCGATGTGTGCCTTGTCTCTTTTTGTAAAACCTGCCGCTCGGCCC GCGTCCTGTCGGACAGGGAAGACATCAACTCCGTGCTGATGACCGCCATG CAGGGTTTGCTGGAGAAGTACGACATAGAGCCGGCGACGATTGGGAGGCT CGAGGTGGGTCAAGATACCTTGTCTCTACAGCAGTGTAGGAACCATGATA CCAGGCACAGTATATAATAGAGGCACGTAGTGCGCCCGAGAGCTTAAGCG GGAAGCTCAAAACCGGGCACACCCCGCGGCAATCGCGCGAGAGGAGTCTG GTGCTAAATGCACCATCGGCGAGCCCGTCCGGCAGCAAGTCTCTCACAAA GGGGGGGAGAGGGAAGAAATTTATTATATTAGCCCCGAGTGGGCCTTCGT TTTTCCTCCCTATTTTTAACCTTCCCCTCCCAAACGACATGGCTCACGAC AATAGTTACAGGTTCTTATTTGGACGTTACTATAGGTAGAGCTAATATCA TAGAACGAGCTGCTTCTCGTTTTGTTTTTGTTTTTTTAATAAGAACACCA ACCGACCGCAAATAAAGGTGGGTACGGAAACCTTGCTGGACAAGTCCAAG TCGGCGAAGACTTGGCTCATGCCGCTGCTGGGGGAGGGCAACACGGACGT GGAAGGCGTCACGTCTTACAACGCCTGCTACGGCGGCAGCGCTGCCCTCT TCAACTCGGTGGCTTGGGTCGAGAGCAGGTAAGTCGGCATTTCTTTTTAA ATCATGCCGATGCTGAGAACGAATAAAGATTATGACTAATCCAAGCTCGC ACGTACGCGGTCCGTTGCTGCCACTGGGATGCCGTGGGAGCTTTGCCCAA GCACATTGAATGCATGCACGCCATGCTATCCCATTCGATGCTCACCTTCT TGCTCTTGTTCACCCCGCGTGCGCTGTGCCAAACGCCTCCAGCCAGAGAA CTCCTTTCTTCCCAATACCGACTGCCTCTTGTTTAGTTCTACCGCGTTTA ACTGTTTCGACGCTGTGTCGTGTCGCCTGTCTCTTAGCGCGTGGGACGGG CGGTTCGCCCTGGTGGTGTGCGGCGATATAGCTGTGTACGAGGCCGGGCC CGCGCGACCTACGGGCGGCTGCGGCGCGGTTGCGATGCTCATCGGCCCAG GCGCTCCCCTAGTGCTCGAGCCGGGGCTGCGGTGAGACAGCCGCTCGTGT TCCATGGAAATCCTCCAAGCGCACCTGCTACGGCTGAGCGACCTCGCTCT ACTTAGTCCCCTCCTGTTCCCCATTAGTGCTTACTTGTATACTGTATATA TTTATATTCGACTATGTACAGGAGACATTTAGCACTGGATGGCTTACGCT GCAGAGGGGGTGATTTTGATCACGCAGCAGCAGTTCCGTCCGTTGAAACT GTAAGTTTGATGTGAGGAACAAGGGACAGATGCGTAGATTGCCCCCGACT CCTACTCTACATACACCAAACACGCTTTCAGCCGCCCATAACTAAGTCGT TGCAAGAAATCAATGAGCAAGTAGGACACCAAGCGCAAACACGGGTTGAA ACAATGAGCAGGTCCTCTCATTCCCGGGACGTGTACGACTTCTATAAGCC CAAGCATTCGGAGTACGCGGAAGTCGACGGTCGACTGTCGCAGGTGCGCA CGGTTTTGTAAAGCATTTTGTTGCGCGATTTGTGGAGGTCCGGTTATGCT AGATAACCACCACCACCACCCCCCTGCCCCCTGTCCCTTCTCCAACCCGA TGAGGCGCCATGTAACCTACTTTTGCAAGTCTCGATTCTTCGTAGTCTAT AGCACGTGCACTTTTTTTCCACGTATCGTTAACGAACACCGCGTTTATCG CGTAAGTATGGACCCAAAAATTGCTGTTGGGGCTGTTTTAAAACAGACAC ACGCACACAGACACACACGCACACAGACACACACGCACACAGACACACAC GCACACAGCCACACACGCACACAGACACACACGCACACATACACAAGTAA GAGTTGTACAAGTAGAAAGAGTGTGTCCCCTTTGTCGCGTCTGATCAGAG GTTTTCGCAACAAGTATCTTTGATCCCCCCTTGGGAGGATCAATGCGAGT GGCATAGAATGACTAGGATGGCAGGGCCGGATTGCGAGGTTATGTGCAAT TTAATAAAATAAACACACACGCACACACACACACGCAATTTAATAAATAC ACACACACACACACACACACACACACACACACAGGGAGCACAAAGTGCTC AGGGCTCAAGTAAGAATTGTACAAGTAGAAAGAGTGTGTCCCCTCTGTCG CGCCTGATCAGAGGTTTTCGTAACAAGTATCATTGATCCCCCCTTGGGAG GATCAATGCGAGTGGCATAGAATGACTAGGATGACAGGGCCGGATTGCGC GGTTATGTGCAATTTAATAAATAAACACACACGCACACACACACACACTT GATCTCCCATTGGGAGGACCTATGCGAGTAGCATAGAATGATTAGGATAA CAGGGCCAGATTGCGTGGTAATGTGCAATTTAATAAACACACACACACAT ACACAAGTGGGCAGAAATTGCGCCTCGTTGCCATCCCCCACCCAATTTTT GCACAGCGCTCACGGCACCATTATTCGATATCGCGTGAATCGGGTCCTTT GTGGTTCTTTTAGCGTTTTTTTCTTCTTTCTAAGATGCAGCCGTTCGATC GCGAAATATTTGTTGTGTCCAGGCCGTGTGGGCCGTTCGAAAGAGGAGAA ACAACGTGTAACGCGCGCTCTCGTCGAAGGCTCACGGACTATGACGATGG AAACATACTGTATTCGGCAACTCGAACTTCTCGTACATGCATCTTGTTGG TCTCGTGCCCCGTATAATGCTGCCGCCTTCCTCGTCGCCTATTGTTCGCC CAAACTGGATCGGTCGCGCGAAGTCGGTGTATCTGGAGTCGGTCGATAAG TGCTACGGAGGGTTGAAGAACAAGGGCGCAAGGTATTGTAAAGCCTATAG CATTGACGATTATCTGGAACTACACTAATAGCTATAATATGGTCAGAAGG GTCGAAGGACATACTTGTATAGCTCTAACGCAAAAATGTCATTTTTTCGT AAGAGCCAGCGCGAACTCTTGTGCTCAAAAGTACTTGTCTTTAGTGTGGT TTTGCGGGGAAGGGAAGGGAGTGCGTTCGTTGCCGCGGCGTGGCGGCAGT AAGTTTCACGAATAAGAGAAGAGAGTCTTGCTATCAAGTGGCGTGGCGTG GACGGAACGTGTCGTGTGTTATGCCGCGTGCTCTTCGGCACAAGCGAACG CCGATTGTCTCCCTCCCGCCCCACTTTAATACTGGTATTAGTGTAAGCAT TAGTGTGACAGTGAGAGTAGCTCGCCTCGCCTCCTCCGTGTACACTGTGA AACGATCCGAACAATAGAGAACCCAGAGTGTGCCGGAAAGAGGTAGGTCT ACGACAGGAGGGTGATGTACCACCAGAAGGCTTAGGTTTACGCCCGCCCC CCCACACACACACCCCGACCCCAAGCAGGACAGGCGTATCAAACCGCGAT GTTAGTCACGTCATACTCGAGCTCTATTTCGTTGCGCGGTATTGGCTGCG CGGTATGCTTGTCTTCTCGCAGGAGTGGAGGCGGGGGCCACGGGGGGACA AACAGTAACGCTCCACCGGCTGCTTCCCTCACGCTGGAGTCCTTCGACTT CGTCAGCCTTCACTCGCCGTACAACAAGCTGGTGCAAAAGGGCTTGGCGA GGTGTGATGGTGATGGTGGTCAGGCGTCTCCCCGTGCGTGCGCGCTATAA ATAGCTGCGCCCCCTTTAGGTATCAAGAAATGTCGTTCCACCCAATAGCA GCGACTGAGTCGATCGCGGGGCGATTCTTGCTCGCCGGTGGGGGGGAAGC TCATCGGGTCCGTGTTCTGATCACAGCGAGTGGCGTCACGATCTTGTCAT CTTGTCGACCCGGGCATAGTCTCTCTCGTTGTGTCATGATCCTGTCATCC TGTTCTGTTCATGATGTCTGACTGTCTGACTTAGGCCAGTAAACGCCCTT GGCAGTATCGTGCAAAGTGCCATGTTTATTAATAGATTATAGGATCACGA CACATTGTCGTGGCGATTGTCGTGACAATTCAAGGCCATGACGAATCGTA ATGACATAGATAACGGTGAGGACAATCGCCATGACAAATATCATGACAGT TTCAGTTTGCGTCATGACAATTTGAGTCTTCATGACAACCGCCATGACGA TTTTTAATTGTCATGATTGGTTTAGGTGTCATGGCATTCGCCGTGACAAA GTGCCCCGGCAACTCTTTCATGACGATCGCCACAACACTTGTCGTATGAC GGTTTGGGACAGTTGTCAGGCCAATTGAAATTATTGTCTTAATTTGTCAT CGTGCTTCGCCGGATAACGTCATCAAACTAGCTTGACGGTTAACCACCCA TCACAGAGCTCTAGACCGTTAGTGCGGAATTTCTTGTTCTGGTTCCCGTT GTTCTTGTTCTAGTTGGGGATGGAAAGCGGGAAATGTTCTAGATGAGGTG TAAAAAACAAAGTTCAGCAAACGTGGTTGACGAGGAGTAAGACTGCTTAA ATTACAGTACACCAAAATTCCCACTCACTCACTGCGCGAACCGGCGAGGG ATGGAAACTACCGTATACATCAGTTGTTAGGGCCACACACGGGCCGGCAG TTTTGCGATACTGTAATAGAGTACAGTAGTTGGAGTTAGGTTACCTAGGT TACCTATTGATAGCGCGTTGATTAGGTGATGGAAAAACAAGAAGCACAAC ACATGCACAGCACAGATACACGATGCACAAAACATACTTACACAGTGGAC ATGTGTATGTACGTATGGTCACACATATAGCAAGAGTAAGGATCAACCGG GTAAGGTTGCCAATCCTGCTCGTGGTCAGCTGAACAGGGAAAATGAATAT TTTCCTGTCCCCGTTCGCGCGCCTGACAGTTTGGTCTCGCGAGACGAGTC TGGCAGTCTCGTCCCCGTCAGCCTGCTCATCTCCTTACTCAGGCTGACTC TGGTGTTTACTTCCGGGATTCCTCCCGAGTTCCGCGACGGCGTCCATTTA TTTATTTAAAACCGTCATACGCCATCGGGTCAGTCCCGAGTTTATCGGGT CACGCAATTGCGTACCGATGGCGTTCACTGCCGAGAGTCCGCCGGCACAG GGACAGTAAACCTCAAGGTAGTTCCAAACGGGTGCTGCCTTGGGCAGGTC ACTATGAACCAATTAATATGCGCCACTCATTCCCACACCCACTAATGGTA TGCATACACAATACCGATACAAACATACAGAATATACGCGTAAACACACC GCCATTTTCGGCGCAGGATGAGCTTTATTGACTACCGCGCCGACCCGTCC TCCGGGCGGTTCAAGGACTTCCACGCCGCCGAGGGAGGCGACTCTGGGTC GGCGGGGCGCGAGAGGTGGGTGAAGGTAAAGCTGGAGGAGACTTATACCG ACCGAGAGCTCGACGCCGCCTTTCGCAAGGTATCGGCGCCCGACTTCAAG GCACGGTGTCTGCCGACCTGTCACGTCAGTCGAGAGGTGAGGGAGGAAAA CTCTTGGAGTGAGGTTCTGAAGAGGGTAGGGGAAGGGTGGCTCTGAAGGA GCGAGCGGGACTTGTTGATCGATCAAGGTCAGCCGTAGCTCTCGCCATCG CTGACGTCTGGTACGGTGCATACGGTGGGGATAAAACAGCCGGGAGCAAC GATAGAATCGCTTGCTCCACGGTGGCTGTTGAGACGACGGCAGAGTTGAG TTGAGGCGAGTCAAGTCGGTCGAACCCAACATCGAGTGAGATATACGGCT TGCTATTTTTGCCATCATGGCGACTCAGGGGTTGGTCTGGTGCTGTCCGG CACGCCTCTGGATCTCTCTCCTTTACTCTTATAGCAACAAGACCATCATC GGCATTTGTTTCGCCCCTAAGATCGTGTCTTCTACTGAAGGGTACCCGAG AACGAGGGGATAAAAGAAGACCCCCCCCCGCCTTCCCCCTCTGGGTAGGT TCAAGATCAAATATTCATCGTTTTTCCTCTCTATCCGAACGTTTGCTCTT TGGGCGCGAACCCACCAGGTAGGCAACTGCTACACCGCTTCGGTGTTCGC CGGGCTGGTGTCTGTCGTCGCTGAGAAGGGTGCATCTCTGGAGGAGAACG GTGGCGCGCGGGTGCTAATGTTCAGCTACGGCTCCGGGTTCGTCGCCACG GCGTATAGGTGAAGAAAAAACCTGGACACGGTATCGTGTACCTATAGCTC TAGCGTTGTACTCCCGAGTTTGAAAGGGTTTTACGGCGTTATAATGAACT GAAAAGAGTACTCGGAGCTTCACTACCTTACCCTAGCGGGTGTCGCTTTT GTTACGTCGAAACGCCACCGTATCCGCGGCACGCAGTTTCGCGCGGGGAA GTTGCACGTAGTCCTTGACCGTAGGAGTTCCAAGACTGATGAAGAGGCGT GATAAAATAAGGGGATATGCTAGTTTCTGTACCACCCGCCTCCTCTCCCC GCCCCGCCCCCCTTTCTCTCCTACCGATAGCGTCGGTATTTTACGAAGTG GCACTTAACTTAACACCGCGAATGGCTACATAGTCTCGTTCGCCTTTGCT CCCTTCGATGGAAAATAACTCGCGCGCGCACGAGCGCAGGCGTTACGAAA GTCGTTTTTGTTCTTTTTTTGCCCTCATATTTTCCCCCACGTTTTTTTTT GCAATCTGTCGGCGCGGATTTGTTCACGCGAGCTCAGCATCAAGGCCAGA AAACCTAGCGCAGGCAGCAGCGCTTTCTCCCTGGGGGCCATGCAGAAGGC GATGAACATCCGAGAGCGGCTCGACGACCGGATGCAACGCACGCCCAAGG AGTTTGCTCTGGCAAGTCTTTTGGCAGTAGAATCATTTTCGCTGACGACG CTCTTATTTTGGCACGGCGTGTACACACGAGCGTACGAAACAACCCTGTT TGAGCTATTTGTCGAGGTTTGTAGAGAGTCGTCGCGAAAGAAATGCGCGC AGCTCTGTTTTATTACCTCGGTCGATATTCGGTTCACGTTTCCATCCTGT TGCCTTACCGAATAATCGGGGACTATTCGGTCCGAGACCCGTCGTGAGGT GGGGACTATATCTTCTTACTGTATCTCCATTGGAATGCAGCTTTTTTTAA TCACCTCAACCTCTCTCATTGCCCTCTGTTGTGTATTGAGGAGGGGAGGT ACAGCTTGCGTTCGGTATATTGTCATGTTGACCCTGGCTGCCGCCCCATG GAGTCACGACGCTTTTTCCCCTTGGAGAAGGAGTAGAAGACACCCTGTTA TGATGTGCGGCGTTTTGCTGTTGAACGTTTAATAGTGTCTGAGGTCCCCA CCGCATTTCTCTCTCTTTCTCAGGCGTTGAGAGGCAAAGGAAGCCCGCAG TTACGCGTGGCACGGCGTATGGGTGTGTGTGTGCGTGTGTGTATGTGTGT ATTTATTAGATTGCACATAACCGCGCAACCCGGCCCTGTCATCCTATTCA ATAGTCATTCTATTCCACTCTTATTGATTCTCTCAAGGGGCCATCATGTG TGTTTGTTTGTGTAGGTGTGTCTGTGTATTTATTAAATTGGACATATGCG CGCAATCGGGCCCTGTCATCCTGGTCATTCTATGCCACTCGTATTGGTCC TCCCAGGGGGGGGGGGGCACGGATACTTGTTACGAAAACCTCTGATCAGA CGCGGCAAAGGGGGCATACTCTCTCTGCCGTTTCTTCTGAAGCCCTGAGC GCCCTGCCCTTCACTCTCTATCATACTTCCTTGTTATGTGATTACCTTGA GATACCCTCAATTGGCAATTATTGAACCAACGCTCTCCTGTCTACGTTTT TTCTCCTACCGCTCCACACACCGCTTCTATAACTCTATAACTCTTCTTGA GTCCTTGCGGTGTATGTGTGTTTGTTTGTGTGTATGTGTGTGTAGAGTAT TCCAGGTGTCCACCGTGCCCCGAACACAAGTACACTCCGGATGAGTACAC TCTGAAAATTGTATTCGATGTGCAGAGTTATTGATGGGGGCAAGTGTTGT GCTTCTACTACCCCTTCCCACCACTCCCCAAGCCATCGACGACCCGATTT TACGTCACATCGACCCGATTTTACTCCACGTGATGTCTTTCTTACCCCAC CATATTTTCTTTTAGACTTCGGCCCCACCATATCGCAACCGAAGACCGAC GGACTGACTGACTTGAATTCACCCATATAATTTACTCGCTTATTGACTGA CTGGCTGGTCCAACACAGGCGATGGACCTTCGCGAGGAGAGGTTTGGCAA AGCAGGCTTCCAGCCCACGGGAGAGACGGGCTCACTCTTTCCCGGCACCT TTTATCTAGCCGAGGTGATTTGAGATTGGGGAAAGGGGGTAAAGACCGAA AAAGCGCTTGATCCCACTGGCTTTGCTCTTCGGGGGTTTTGCCACTATTT TTCATATTGATTGTGTCCGTTGGTGTCGAGCCGTGCTGCATGTAATTAGT AGTTGGTAATTAATGACGCTTGTATTATTGTGGTGATTTATGATTTTCTC CTCCCCCAGAGGTGATTGAGGTGATTGGCGTCCTTATACGAATATAGTAT ACAGTATTTCCGTCCTTTTCCCGAGTATACAGTCAGTAACTCGTCGCCCG AGTGGTCTAGTAGGTAACCTGCACACCTTCTAGCGCGGAAGCCGTGAGTT CGATTCTTATTATTACCAGAATTTTTGTTTTTTCTTTCTTCCGTAGCGAA AAGCGCGAGTCAGTAAAAATTCAACCATTGGTTGACGAGTTGTTTTAAGA GTGCTGAACCTGCATCGCGATATAAAATCGTAAGGCGTGGACCGGGGATA GATGAGAAGATCCTTGGTGACCCCAGGCAGGATGATAATGTTGAGGCCCA TCGGCTGTATCTGCCGGCAGCTGTATCTCCGCCGGGGAGCCGTGTGCCCG CTTCGGCCTTTATCATCTCTTATCTAGACAAGAAGAGAATCGTAAGGCGT GGACCGGGGATAGATGAGAAGATCCTTGGTGACCCCAGGCAGGATGATAA TGTTGAGGCCCATCGGCTGTATCTGCCGGCAGCTGTATCTCCGCCGGGGA GCCGTGTGCCCGCTTCGGCCTTTATCATCTCTTATCTAGACAAGAAGATA CTTTCGTGACAACCGTGGGATTCGAGCGTGGCGCGCAGCTTTACGCACCG CGCGCTTAAGGGCGTCGACGACCTATCTCTCACACACGCGTAGTACCTTC CCGGGGTTGTCATTGCTAACTTTGTGTACATTTGGTATCCCATCCACTCC GGGCTAGTTTTGTGTACCCTGTATCCCGTCCCTATCTAATACCGGTAGCA TCTACTTCGTTCATCCATTGTGTCGTGTGCTTGTTTGCTGACTGACTGGC TGACTAACTTGCCCCTCTCGCCTTTTCCCTGGTTCGTGCGCTGATTCGGG CGGGGGCGGGTGCACCTCTTTTTTTTTCACGCGATCTGTTGTAGGTAAAC GACAAGTATCACAGGAGATATGCCAGGACCTCCCCCTCCGCCGTCCCTCC GACGACTTGATGCTATCGAGAGAGTACTTCGTAGGAGCGGCGTATCGAGG CTACAGCTGTGTATCCGACCTCCTTTAGTTTGATCTTGAAGACAGGGCGG AGATATTCAAGGAGGGCGGGGGTTAGGTTCTTGTTTAGTGTTGTCTCGAT TTGTGATGAATTTCGTTTCTCAGAGCGAAGCAGGGGAAACTTCACTATAA TAATTTCAATGATGATCCGTTTTCTTGGAAACTGTTGGGACACCTTCAAA CCTATTACATTCAATGGGGTTCCAAATCAGGCACGAGAAGCTCGGTACAT CGAGTACATCACCTACATCACATGTTTTTCC
back to top

Coding sequence (CDS) from alignment at A-nodosum_M_contig83:297992..308672-

>mRNA_A-nodosum_M_contig83.28.2 ID=mRNA_A-nodosum_M_contig83.28.2|Name=mRNA_A-nodosum_M_contig83.28.2|organism=Ascophyllum nodosum dioecious|type=CDS|length=1467bp|location=Sequence derived from alignment at A-nodosum_M_contig83:297992..308672- (Ascophyllum nodosum dioecious)
ATGTTCGGTATGCACTGCCTTGTAATGGTGACCTCTTACTGCGCTTCGCC
CGAGCATCAGTCGGAGCTAGAGAAGGCCGACGGCTGCGACGGAAAGTACA
CGGTTGGCCTTGGACAGAATCGCCTGGCCTTCGTCGACGATAGGGAAGAC
ATCAACTCCGTGCTGATGACCGCCATGCAGGGTTTGCTGGAGAAGTACGA
CATAGAGCCGGCGACGATTGGGAGGCTCGAGGTGGGTACGGAAACCTTGC
TGGACAAGTCCAAGTCGGCGAAGACTTGGCTCATGCCGCTGCTGGGGGAG
GGCAACACGGACGTGGAAGGCGTCACGTCTTACAACGCCTGCTACGGCGG
CAGCGCTGCCCTCTTCAACTCGGTGGCTTGGGTCGAGAGCAGCGCGTGGG
ACGGGCGGTTCGCCCTGGTGGTGTGCGGCGATATAGCTGTGTACGAGGCC
GGGCCCGCGCGACCTACGGGCGGCTGCGGCGCGGTTGCGATGCTCATCGG
CCCAGGCGCTCCCCTAGTGCTCGAGCCGGGGCTGCGCAGGTCCTCTCATT
CCCGGGACGTGTACGACTTCTATAAGCCCAAGCATTCGGAGTACGCGGAA
GTCGACGGTCGACTGTCGCAGTCGGTGTATCTGGAGTCGGTCGATAAGTG
CTACGGAGGGTTGAAGAACAAGGGCGCAAGGTATTGCGGGGGCCACGGGG
GGACAAACAGTAACGCTCCACCGGCTGCTTCCCTCACGCTGGAGTCCTTC
GACTTCGTCAGCCTTCACTCGCCGTACAACAAGCTGGTGCAAAAGGGCTT
GGCGAGGATGAGCTTTATTGACTACCGCGCCGACCCGTCCTCCGGGCGGT
TCAAGGACTTCCACGCCGCCGAGGGAGGCGACTCTGGGTCGGCGGGGCGC
GAGAGGTGGGTGAAGGTAAAGCTGGAGGAGACTTATACCGACCGAGAGCT
CGACGCCGCCTTTCGCAAGGTATCGGCGCCCGACTTCAAGGCACGGTGTC
TGCCGACCTGTCACGTCAGTCGAGAGGTAGGCAACTGCTACACCGCTTCG
GTGTTCGCCGGGCTGGTGTCTGTCGTCGCTGAGAAGGGTGCATCTCTGGA
GGAGAACGGTGGCGCGCGGGTGCTAATGTTCAGCTACGGCTCCGGGTTCG
TCGCCACGGCGTATAGCATCAAGGCCAGAAAACCTAGCGCAGGCAGCAGC
GCTTTCTCCCTGGGGGCCATGCAGAAGGCGATGAACATCCGAGAGCGGCT
CGACGACCGGATGCAACGCACGCCCAAGGAGTTTGCTCTGGCAAGTCTTT
TGGCAGCGATGGACCTTCGCGAGGAGAGGTTTGGCAAAGCAGGCTTCCAG
CCCACGGGAGAGACGGGCTCACTCTTTCCCGGCACCTTTTATCTAGCCGA
GGTAAACGACAAGTATCACAGGAGATATGCCAGGACCTCCCCCTCCGCCG
TCCCTCCGACGACTTGA
back to top