mRNA_A-nodosum_M_contig827.4.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig827.4.1
Unique NamemRNA_A-nodosum_M_contig827.4.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig827.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig827contigA-nodosum_M_contig827:243940..247699 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size163
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size138
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870162.2741024-UTR-A-nodosum_M_contig827:243939..2439631680870162.2741024-UTR-A-nodosum_M_contig827:243939..243963Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig827 243940..243963 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870162.286637-CDS-A-nodosum_M_contig827:243963..2440141680870162.286637-CDS-A-nodosum_M_contig827:243963..244014Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig827 243964..244014 -
1680870162.3013875-CDS-A-nodosum_M_contig827:247612..2476991680870162.3013875-CDS-A-nodosum_M_contig827:247612..247699Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig827 247613..247699 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig827.4.1prot_A-nodosum_M_contig827.4.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig827 243964..247699 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig827.4.1

>prot_A-nodosum_M_contig827.4.1 ID=prot_A-nodosum_M_contig827.4.1|Name=mRNA_A-nodosum_M_contig827.4.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=46bp
VGRSGESLEAPYWRTISLVASPLASIDTILYCKLTTSEAHTFPLA*
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mRNA from alignment at A-nodosum_M_contig827:243940..247699-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig827.4.1 ID=mRNA_A-nodosum_M_contig827.4.1|Name=mRNA_A-nodosum_M_contig827.4.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=3760bp|location=Sequence derived from alignment at A-nodosum_M_contig827:243940..247699- (Ascophyllum nodosum dioecious)
GTCGGCAGATCCGGCGAGTCCTTGGAGGCGCCATATTGGCGAACAATCTC
ACTGGTTGCTTCGCCTCTTGCCAGCATTGACACCATAGCCGCATGGTCTA
AAAGTATACCATAATGACGAGCGTTATCCCGTGACGCATCGCGCAATGCA
CGGGTCTCGCCACGCGTCCTCCCGGGCATCTCCACGTATCCCTCGTGTTC
TAATTTGCGACTGGCGCGCGGGGGGATCGGAGCCGGGGAGTTCGACGTTC
GTGTAGGCGGTGGTATCGCTGCCGGTGCGGGAGCTGGCGGAGTGGCGACG
GGTGCAGGAGATGGCGCGGCGACGGGCACATACTGCGGCATGGGGACGTA
GATGTCCCTCGGTGGTTCTGATGGCGCGGCCCGGATCGGGGCGTTGATCC
ACGGTACTTCCGGGTGGTGCCAGGTGACGTCGCGCGAATAAGCGACCCTC
CCCGTCTCCGCATCCAGGAGCCGGTAGCAATCCCGCCCGTGATTATACCC
AAAATTTAGAAATAACACATACGGGCCCGGGATCCGTCTTCCGCTGTCGC
GGCACGCGGTGATAAGCGGGCTGGAGGAAGGGCAGCAGTGGCAACCGCGG
GCGGCTCCCGTAGAAAATCTCATGGGGAAAGCCACTCGTCGTTTACTGAT
GTTGCCGCCCTGTTAAAGCACTCCGATGCCCAGAGTAGCGACTCCAGCCA
GAGGCTCGTTCCTGCCGCGTCGGTACAACCCCGTATCTCTTCCAGGCAAA
TGTCCGGGTACAGCTGTGGAACTCCAAGTCGCGCCGCGTGTCCAGCCTTA
AAGCTCGCGATATCGCGCTCTCGACGGGTCCATTCTGCTGTGGCGTGTAT
GGTGCCGTAAACTCGCGACGAATTCCGAGGCCATTGCAGAAGTCCACGAA
CATACTGTTCGAGTACTCGGTGCCGTTGTCAGTGCGGAACGCGCGTGGGA
CCCCCATATCTGCCACGAAGCGTTTCACGACAGAAAGAATGGCGGCCGCG
CTCTTCTCGCGCACGCCGTATGGCCGCTGTAGACGCGAAGCGCTGTCGAC
GAACATCACAACGTACCGCGACCCTCCAAGAGAAGTTGGGTAAGGCCCAG
CGGTGTCGATGTGGACAAGTCCCAGCGGGTGCGTCGCTCGCCTCGTCGCG
TGATGTGGGGTAGGTGCTCGATGTCCCTTCGCTCGAGAACAAGCTGAACA
TGAAACTAGTTCCCCGGTCAGGCGGATCCCATGATGTTTCGCTGTCGCTT
TCAGCACACTCGCATGGGCGTGGGCAAGGGAAACGTGCAAATGGTTAATA
TCGACTTCCTTGCCATGTCTTAGTAGCCCTGGGATCAGGGCAGCCGCTGC
CAAGGGGGTTTCAATCCTGCACGCGGGCCTGGGGGTTTTTCCTATGGGGG
TTTTCTCTACGAACTGAACTTCCCCCAACACAGAACTGAGAGGGGGAAAG
GGAGTCGGTTCCAGTACTGTAACAACTCCCGGAACATTCGAATTTAAACC
AGTCGCGCACATGTTCCTGCGGGGGGGGGGGGGGGTTCTGCGACGGAGGT
GGAATGGGTGGCCCAACTGCCTCAAAAAGGTTTGTTGCGCGCATGTTTCC
TTTGCCTCCGTCTTGCTCCTACAGTACCGGCGGGGAGCCGGTGGCACGCA
AATATGATCCGCTACTGCTGCGGGGGAACGTCAGATTAGCTCCGATAATG
TGCGTTCCAGATGCGTCCGACACTATCAGATGTGTTCTCTGGACAGCGTG
CAGCGAGTACAGGTTAAACCCTAAATTTGGTACGTACGCGACATCAAGCA
ATGTGATTCTCTGATCACCCTTCCCATGGAAAATGACATCCATATTCCCG
ACATACTCTACACTGATTCTCCGACGGTCCCCGATCGTGATTGTCTCGCG
ACCGGGCGGAGGGGGCCTCACATTATACATCCTTGTCCCGTCATGCGTCA
TATGACACGACGCGCCGCTGTCGGCAATCCAAACATCATTCTCGTTGCTG
CCCGACTGCACTACAAACGCACTGTGTAGGTAGCTACCCGGTACAGTAAT
ATCCCCTACCACGCTTTCACTCGGTACTGGAGACTTGCCTGGTGGCGCAA
ATTGCGCCAGGGTGGCCTGTTTGTTGAAGGAGCTCCAGGATGACTCGGAC
GGAACGGGCGGTCCATGCGGGTCCGGCGGCGCGGGGGCTGACTGTGACGG
TGGAGGGCCACTTCCAAAATCGGCGTAGTTTTCATCTAAATAGGTCGCAG
CTTGCGCGCCCATGTAGGGGTCAGGAAAACGCGTGGGGGTACTGCACGGC
ACTCCGACAGAAAATGCCCGTGTTTACCACACCTGAAACAAACGCGTGAT
GGACCCGTCCCACTGAATGCTGTGCGGCTGCTGCGGCTGATGGCGCGGCT
GGTACCTGGTACTGCTGTTGCGGCTCCTGTTGCTGATATTGCTGGTGCCG
CTGCTGATATTGCGGCTGATGCGCGGGCTGCTGATATTGCGGCTGATGCG
CGGGCTGCTGATATTGCGGCTGATGTGCGGTTGTTGCTGCTGATGCCACG
GCTGATACTGCTGTTGTTGCGGCTGTTGCTGCTGATGTTGCGGCTGTTGC
TGCTGATGTTGCGGCTGCCGTTGATTCGGCGGGCGACCTTTACCGTCGCG
CTTGCCGCGTCCGCTGCCATTGTGGCCTCCACGTCCCCCGCTCCGCCCGC
CGCTTCTGGCTTTGAAACCAGCGGCCAAGGCATGGTTGCCGTCGGTCCCG
TCCGAGCTCCTGTTAAGCTCCTCCACGCGAACGAGACCACCCTCCAGGTC
GGCTAGAGAAAAATCTGTTTTTAACGCAAAGTTCCTCTTCTCGGGAGCAT
ACGAGGGGGGGAGACCATTGAGAACTCTGCGGCTGATCTCTTGATCGGTT
ACCTCGACGTCATGGTACTGTACATTGAGGGCTAGTGACTTTGCGCGAGC
AATGTATTCTTTCATACTTTCGGCACTGTCCATACTCAAACCTTCGAAGT
TTTTCTTGGCCTGCTCTTTTGCCCGATCGCTACTGTCATCCTCAACCATG
CTTTTCAGTATTTTCCATGCCTCTGATGGAGCTTTGGCTCGCACCACGAG
GTCTGCAATCGACCGATCCTTCTCAACAGCTTTTGTTAGGCCGGTCCATA
CGGTTAGTGACTGCGCCACAATCTGTCTACCGTACTCAATCTCCAGCTCT
CTGCGTGATTTGTCTCCAGTCAAGATAACAGGACGACTGTGGCTAAGCGC
GTCCTCCGACCGGGACGATAAAGCCCATGCGTGAAATTGGTTCAGAAACC
TAGATAGGCTACTGCGTTCCCCAGAGTACGTGGGGATCGGGAATGTTCCC
GCCTGCTGGTTTGGTGTGGGCAGTGTCGAGTTTCGCTCGACTTGTCTTCT
CAAATCTGCAAGATCACTTTCGTAGCGACTACCAGTACGATCGACTGCAT
CAAACCTTCTGTTGATTTCTTCGATCTCGAATTTCAGGAGTTGAACGTCC
TTCATTGTGCCGTCCCTGATCTCGGCCATGTCATTCTCCAGCTGCGACAA
TCTATCGCCAAATGCTGTGGCTCGTGCTTGGGGACTCGTGGCTCCATCCT
TTGGGCCCGACCCTGTCGGTCTCCTCGCAGCCATACGAATTTTTGAGAAT
TCTTGAGATGGGGACTTGATGCAACACAACCCTAGCTTTACTGCAAGCTC
ACCACGTCTGAAGCTCACACTTTTCCGCTAGCGTAATGAGTTATTTCAGG
GCGTGATGAT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig827:243940..247699-

>mRNA_A-nodosum_M_contig827.4.1 ID=mRNA_A-nodosum_M_contig827.4.1|Name=mRNA_A-nodosum_M_contig827.4.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=138bp|location=Sequence derived from alignment at A-nodosum_M_contig827:243940..247699- (Ascophyllum nodosum dioecious)
GTCGGCAGATCCGGCGAGTCCTTGGAGGCGCCATATTGGCGAACAATCTC
ACTGGTTGCTTCGCCTCTTGCCAGCATTGACACCATACTTTACTGCAAGC
TCACCACGTCTGAAGCTCACACTTTTCCGCTAGCGTAA
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