mRNA_A-nodosum_M_contig8267.5.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig8267.5.1
Unique NamemRNA_A-nodosum_M_contig8267.5.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
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BLAST of mRNA_A-nodosum_M_contig8267.5.1 vs. uniprot
Match: A0A6H5KLM1_9PHAE (Lipase_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLM1_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 2.350e-9
Identity = 30/37 (81.08%), Postives = 33/37 (89.19%), Query Frame = 3 
Query:  195 ALLLLYWMTRGLGTAGGKRDPAPAAIVPERRYITTIL 305
            A LLLYWMTRG G AGG+RDPAP+AIVPERRYIT +L
Sbjct:  299 AFLLLYWMTRGFGGAGGERDPAPSAIVPERRYITMLL 335
[Close]
BLAST of mRNA_A-nodosum_M_contig8267.5.1 vs. uniprot
Match: D7G482_ECTSI (Lipase domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G482_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 2.360e-9
Identity = 30/37 (81.08%), Postives = 33/37 (89.19%), Query Frame = 3 
Query:  195 ALLLLYWMTRGLGTAGGKRDPAPAAIVPERRYITTIL 305
            A LLLYWMTRG G AGG+RDPAP+AIVPERRYIT +L
Sbjct:  307 AFLLLYWMTRGFGGAGGERDPAPSAIVPERRYITMLL 343
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8267.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KLM1_9PHAE2.350e-981.08Lipase_3 domain-containing protein n=1 Tax=Ectocar... [more]
D7G482_ECTSI2.360e-981.08Lipase domain protein n=1 Tax=Ectocarpus siliculos... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8267contigA-nodosum_M_contig8267:20901..21616 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size716
Hectar predicted targeting categoryother localisation
Exons1
Cds size537
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870162.0076857-UTR-A-nodosum_M_contig8267:20900..210181680870162.0076857-UTR-A-nodosum_M_contig8267:20900..21018Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig8267 20901..21018 -
1680870162.033071-UTR-A-nodosum_M_contig8267:21555..216161680870162.033071-UTR-A-nodosum_M_contig8267:21555..21616Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig8267 21556..21616 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870162.0216336-CDS-A-nodosum_M_contig8267:21018..215551680870162.0216336-CDS-A-nodosum_M_contig8267:21018..21555Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8267 21019..21555 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8267.5.1prot_A-nodosum_M_contig8267.5.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig8267 21019..21555 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig8267.5.1

>prot_A-nodosum_M_contig8267.5.1 ID=prot_A-nodosum_M_contig8267.5.1|Name=mRNA_A-nodosum_M_contig8267.5.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=179bp
MMTSMYKMQFSHTIKLLCFNNFGNYFVINAVAVAITATKNEKIKGVIVAV
LDDSRAGHGGGQARPSPSGNRPRKALYHYDTFENCIQYKIRGSSEPLGTQ
GLFKKSCRLFVTVWSTSSRPVPFLAHPTNVSRFVPGGIIIVVDCLFIIYT
YCINMCVCAVRYLPRAAAAVGATHVAES*
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mRNA from alignment at A-nodosum_M_contig8267:20901..21616-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig8267.5.1 ID=mRNA_A-nodosum_M_contig8267.5.1|Name=mRNA_A-nodosum_M_contig8267.5.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=716bp|location=Sequence derived from alignment at A-nodosum_M_contig8267:20901..21616- (Ascophyllum nodosum dioecious)
TGTTAGCTGACCACGAGCAGGATTGGCAACCTTACCCGGTTGATCCTTAT
TTTTGCTATATATGATGACAAGCATGTACAAAATGCAATTCTCCCACACG
ATAAAATTACTGTGTTTTAATAACTTCGGGAACTATTTCGTGATAAACGC
CGTTGCCGTCGCCATCACCGCCACCAAAAATGAAAAAATAAAAGGCGTTA
TTGTTGCTGTACTGGATGACTCGAGGGCTGGGCACGGCGGGGGGCAAGCG
AGACCCAGCCCCAGCGGCAATCGTCCCCGAAAGGCGCTATATCACTACGA
TACTTTCGAAAACTGCATACAGTATAAGATTCGTGGTTCCAGTGAGCCAC
TCGGAACGCAAGGTCTTTTTAAAAAATCTTGCCGTTTATTTGTGACCGTG
TGGTCGACCTCGTCCCGTCCTGTCCCGTTTCTTGCCCATCCAACAAATGT
ATCACGATTTGTACCTGGTGGTATTATTATTGTAGTTGATTGCCTTTTTA
TTATATATACATATTGTATTAATATGTGTGTATGTGCGGTACGATATCTC
CCCCGCGCAGCTGCTGCTGTTGGGGCTACTCATGTGGCAGAATCCTAATC
CCATACTGTACTGTACTGTACTGGCGGTGGAGGAGTGGACACCGGGAGGC
TTCGGAGACGGCGTCTACGGTTGGGCCAGGCTGGCCAGGAACCTCTGCCA
GTTCGTCGGGATTCAG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig8267:20901..21616-

>mRNA_A-nodosum_M_contig8267.5.1 ID=mRNA_A-nodosum_M_contig8267.5.1|Name=mRNA_A-nodosum_M_contig8267.5.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=537bp|location=Sequence derived from alignment at A-nodosum_M_contig8267:20901..21616- (Ascophyllum nodosum dioecious)
ATGATGACAAGCATGTACAAAATGCAATTCTCCCACACGATAAAATTACT
GTGTTTTAATAACTTCGGGAACTATTTCGTGATAAACGCCGTTGCCGTCG
CCATCACCGCCACCAAAAATGAAAAAATAAAAGGCGTTATTGTTGCTGTA
CTGGATGACTCGAGGGCTGGGCACGGCGGGGGGCAAGCGAGACCCAGCCC
CAGCGGCAATCGTCCCCGAAAGGCGCTATATCACTACGATACTTTCGAAA
ACTGCATACAGTATAAGATTCGTGGTTCCAGTGAGCCACTCGGAACGCAA
GGTCTTTTTAAAAAATCTTGCCGTTTATTTGTGACCGTGTGGTCGACCTC
GTCCCGTCCTGTCCCGTTTCTTGCCCATCCAACAAATGTATCACGATTTG
TACCTGGTGGTATTATTATTGTAGTTGATTGCCTTTTTATTATATATACA
TATTGTATTAATATGTGTGTATGTGCGGTACGATATCTCCCCCGCGCAGC
TGCTGCTGTTGGGGCTACTCATGTGGCAGAATCCTAA
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