mRNA_A-nodosum_M_contig8267.2.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig8267.2.1
Unique NamemRNA_A-nodosum_M_contig8267.2.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8267.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8267contigA-nodosum_M_contig8267:15767..16375 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size386
Hectar predicted targeting categoryother localisation
Exons2
Cds size300
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870161.8967195-UTR-A-nodosum_M_contig8267:15766..158501680870161.8967195-UTR-A-nodosum_M_contig8267:15766..15850Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig8267 15767..15850 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870161.9101694-CDS-A-nodosum_M_contig8267:15850..160721680870161.9101694-CDS-A-nodosum_M_contig8267:15850..16072Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8267 15851..16072 -
1680870161.9238267-CDS-A-nodosum_M_contig8267:16297..163751680870161.9238267-CDS-A-nodosum_M_contig8267:16297..16375Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8267 16298..16375 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8267.2.1prot_A-nodosum_M_contig8267.2.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig8267 15851..16375 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig8267.2.1

>prot_A-nodosum_M_contig8267.2.1 ID=prot_A-nodosum_M_contig8267.2.1|Name=mRNA_A-nodosum_M_contig8267.2.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=100bp
RLLVQWKALALYDTRDDLVVWLPRLERGRHACVTYIESFPAPRIRRGRQR
RWRQRFFVFQRLQRPEVSHRRNIIVIVGSSLPVGFVSQLHCVHTFLTAV*
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mRNA from alignment at A-nodosum_M_contig8267:15767..16375-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig8267.2.1 ID=mRNA_A-nodosum_M_contig8267.2.1|Name=mRNA_A-nodosum_M_contig8267.2.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=609bp|location=Sequence derived from alignment at A-nodosum_M_contig8267:15767..16375- (Ascophyllum nodosum dioecious)
CGTCTCCTAGTTCAATGGAAAGCTCTAGCGCTGTACGATACGAGAGACGA
TTTGGTCGTATGGCTTCCCCGTCTTGAGGTAATCAGTATTTCGTCACGGA
ACGCTCGCGCGCTATCGTAGGCTAATATCAGTGTCAATATCAATATCAGT
ATCAGTATCAGTATCAGAACACAAGCAAACCTGACCACAATCCCAACGCG
TTCTCGCGCCCTGCGCTTCGTTACCCCCCCCCCCCCCCCCCCACATCGCC
GCGGTGATCTCTATGTCCATGGTTCTTCGCGCTCACGACCTGGTGGGCGT
AAGCGTGGAAGACATGCTTGTGTTACTTACATCGAAAGCTTTCCAGCCCC
CAGGATACGGCGAGGACGGCAGCGGCGGTGGCGCCAGCGCTTCTTCGTGT
TTCAGCGCCTCCAACGGCCTGAGGTTTCACACCGTCGCAACATAATCGTT
ATTGTAGGGTCATCCCTCCCCGTCGGTTTCGTCTCCCAGCTGCATTGTGT
ACACACGTTTTTGACTGCAGTATAGTACCGTGTGGTGATGCACTTGGCCG
TTAACGTTAACGGTTTGGACATTGTTGATGGAACCCTGTTGATGGTTTTG
TAGGTGTTG
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Coding sequence (CDS) from alignment at A-nodosum_M_contig8267:15767..16375-

>mRNA_A-nodosum_M_contig8267.2.1 ID=mRNA_A-nodosum_M_contig8267.2.1|Name=mRNA_A-nodosum_M_contig8267.2.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=300bp|location=Sequence derived from alignment at A-nodosum_M_contig8267:15767..16375- (Ascophyllum nodosum dioecious)
CGTCTCCTAGTTCAATGGAAAGCTCTAGCGCTGTACGATACGAGAGACGA
TTTGGTCGTATGGCTTCCCCGTCTTGAGCGTGGAAGACATGCTTGTGTTA
CTTACATCGAAAGCTTTCCAGCCCCCAGGATACGGCGAGGACGGCAGCGG
CGGTGGCGCCAGCGCTTCTTCGTGTTTCAGCGCCTCCAACGGCCTGAGGT
TTCACACCGTCGCAACATAATCGTTATTGTAGGGTCATCCCTCCCCGTCG
GTTTCGTCTCCCAGCTGCATTGTGTACACACGTTTTTGACTGCAGTATAG
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