mRNA_A-nodosum_M_contig8256.3.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig8256.3.1
Unique NamemRNA_A-nodosum_M_contig8256.3.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig8256.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig8256contigA-nodosum_M_contig8256:2678..6837 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size195
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size171
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870161.2798276-UTR-A-nodosum_M_contig8256:2677..27011680870161.2798276-UTR-A-nodosum_M_contig8256:2677..2701Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig8256 2678..2701 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870161.2906897-CDS-A-nodosum_M_contig8256:2701..27721680870161.2906897-CDS-A-nodosum_M_contig8256:2701..2772Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8256 2702..2772 -
1680870161.3040328-CDS-A-nodosum_M_contig8256:6737..68371680870161.3040328-CDS-A-nodosum_M_contig8256:6737..6837Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig8256 6738..6837 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig8256.3.1prot_A-nodosum_M_contig8256.3.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig8256 2702..6837 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig8256.3.1

>prot_A-nodosum_M_contig8256.3.1 ID=prot_A-nodosum_M_contig8256.3.1|Name=mRNA_A-nodosum_M_contig8256.3.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=57bp
MLTNFYKSRLGALVHGRRWISIIWKSAAVTVEVAVLCSQGKLGMGTEEPE
GDCQDK*
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mRNA from alignment at A-nodosum_M_contig8256:2678..6837-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig8256.3.1 ID=mRNA_A-nodosum_M_contig8256.3.1|Name=mRNA_A-nodosum_M_contig8256.3.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=4160bp|location=Sequence derived from alignment at A-nodosum_M_contig8256:2678..6837- (Ascophyllum nodosum dioecious)
ATGTTGACGAACTTCTACAAGTCTCGTCTCGGCGCTTTGGTTCACGGCAG
ACGCTGGATCTCGATCATCTGGAAAAGCGCTGCGGTTACGGTGGAAGTAG
GTGAGAGTGATGATCTTCACGACCTCGTCTTCGCAAATCTTGGTGTTTCT
GCTCCCGTCTCTCGAAATAATTTAACATAGGAAACCCAGGATGGCGAGCC
CGCGTAGCAGCGAGTCCTACATTGGCGAAAACAAACTCCTACTTGTAGCC
AGAACCGAGAGGAAGTCGCAGCCGTTCAGGACCTAAGCCAGGACACGTAG
AGCGGTATTTGTACCGTCGTCAAGCCAGGACGAAAGCTCCGCAGGCAAAC
CCCGTTGGTCTTCGCTATTTCTTGACGACGCTCTCGCGAGGTATACCCGG
TCCACGTCCATGTATTTCGTTGAGTGAGCCCTTCCCACGCTGAAGCTGCG
GTTACATGTACTAGTACTGCGGATGGTCCATCGGGGACGATGCATCTAGT
TCCCATCGCAAGAAGCAAAAAGTATCCACTAGTCCACGTCGAAGGAAATC
GTGAGCCATTTCGACAGCCGCACTCCATCCACCAAGTAACAGCGGTAGTT
GACTACAAAAGATCGGAAGCCATCTCTCCTCTCTTATGCAGGGGTCGAGC
TACCCATTCCACCCTTTACCCAGGAGACGACCCCGTTCGATGAGGAGGAC
ACTGTTTATAGGAGGCGTCGTCCCCTCAGCTGGTGATGCCGTGCGGCCGT
CGCGATCAAATGTCGTTCCTGTCCCTCCTCTGCATTCTCCCTATCTGCCG
CGGCCGTCATCGCAGTAACTTGACGGCCTTGTGTACCGAAACCAACCGTT
GAAAGCGATGGTCGGTGAATCTGTACGGGTGAGGATGTCGGGGTGTCAGA
GAACGAGGTCGCGGATTTCCAGCGCTTTTAGGTATCGGTTACCACCGGCT
TGCAGCAAGTACTGGACACCTTCAGCTCGAAGGGGCTCGCAGAATTGGAT
AAATAGAATGAAACCTCGCTCGCGCCCATCCTCTCCGTCCTACCGGACTG
AGTCCATGCCTTGATGCTGGCCTCAACACGAGAGGAGTAATCGTACGAGT
AGCCCCCGTTGATAGCTTTTATCTTCACCCGGCCATCTCGACCCCTTATC
ACGTATGTATGTGTGTATGTATGTATAGCCATCACTTACAACAGAGTAAG
GATCAACCGGGTAAGGTTGCCAATCCTGCTCGTGGTCAGCTCAACAGGGA
AAATATGTTTTCGCTTTTTTCCCTGTCCCCGTTCGCGCATGAGAATTTGG
TCTCGCGAGACAGGTTTGGCCGTCCCGTCCCGCGTCAGCCTGCTCATTCT
TCACACTAAGGCTGAATCTGGTGGTTATTCACGGGATTCCTCCCGCTTTC
CACGGCGGCGTTCATTTTACACCGCTCATCACCATTGGGTCAGTCCTTAG
TTTATCAAGGTCACGCAACTGCGTATCGAGGGCTAGTCGTTCTTGATCCT
GTCGAAATGTGCCTACACAAGAACCAAACCGTCCTCCGACAAAATCTCGG
CACCGGGTTCGCGGTGGATCTCTCTCATGCCATCGGCGGCGGCATCTCGT
ATTTTGTGCGTCAGACGCAACTTTGAAGTCGTCGGGACATACTCTTGCAA
GGAGGCTGAAGGGAGGGGCGAAGGGTGGGGGGGGCGCAGCCCGGCAGACT
CATCCCATGTTTACGCATATGTTGCCGTCTTGAGAATTGAGGGTGACAGA
GAATAAGGGTGGTTGGCCGGTAAGACGTACCTTGTACGGGGAACGGCTAT
ACAGAGGGAGGGCGCCCCTGCTGTTTAGATTAGCCGCTGTGGCGTTGCTG
TGCGTAGCGCATGGCGGTTCATCGATGCCCACCCCCACCTGATGAAAACG
CCTTTCACCCCCCCCCGTCCTTAACGAAGGCAGCACTAGAGAGGTAGGGT
AGGGGGAATAGTGGGGGCGATATAATCTTTTTGGGCAAAAAAACGGAGAC
GACGCCAATGCGCACCCAGACTAAACAAATCACAAACAAGGAAACAATAT
ACGGAAAAGGAAGTTTTGCTATTTGCGCAGCAACAAGTTATGAAAAAACT
AAGAACTTAATGTTGAAAAATATTTTATGGAACTCAATACGAACGCCGTG
CACGCGAAGACGGTGGAAGCAATCGCTCCCTCCAACACAGTCCTTACCTG
ATCAAACATCCGTCATGGCCTGGGGAACAACCACGCCAGCCCTCGTCATC
TGACTTTAGACTGTCTCCTGCGAGGCGCTTGCAAAATATCCGAGGATGCG
AGTGAGAACAGCGTCAAGCTCCCGCGTACCATTGCCGGTGCTTCTCAGCT
TCTGGTGAATGACGTTCGGCTTCCACTCTTCGTTTACCGTCTTTGTCTGT
TGTGGGGCCGGAGGCAAAGGCTTCCATAAGATTTTAGGAGGCCCTGCTCA
GCTTTGTCGTACAACACCGAATTCCTCACGACATTGCCGAATGTTTTCGC
GTTTTTTTTTTTAAATGCGCGGGGTTTCTCAGCGTTTTTGATAATTTTAT
TTCTTCTATCGCGGGCGCTGAGGGTATGACTCGGCGGCAAATTTAGACCC
TCAGAGCACCAAAATAATTACTTCTTCTGTGTGAGAGTTACTCGATGTAT
GGTAAAATGCTGCCAGATTACCCTACTGGTGAAAAGGAGCATTAGTATTG
GGGTACGTTGGATTTACGTTATTACACAGGGGACTGGTTTAATATTCCCC
TGGTATCTAGGGTGAACAGTCCCACTATTTTAGTGTCTAAGAGTGTACTA
GCGTGTACCACATTATATGATGTATGCATGAGAGTGGTATGAGATTGGTA
CAAGTGTGTTTGTCAAATACAGGACGTGTGTTAGAGTCCTTACCAATGTG
TTCTGGGGCACTGGGGCACCAATGTTATAATAATATATCGGGTTCTACGC
AAGTATGTATGTATGTACCAGGTATGAATGTATCGCCATCACATGTACAG
TAGCAGAGTATGGACCAACCGGGTAAGGTTGCTAATCCTGCTCGTGGTCA
GTTGAACAGGGAAAATGGATATTTCTCTGTCCCCGTACGTACGCGCCTGA
GAATTTGGTCTCGCGAGACGGGTTCGGCCGTTCCGTCCCCTGTCAGCCTG
CTCATTCTCTATACTCATGCTGAATCTGGTGCTTACTGACGGGATTCCTC
CCGATTTTCGCGGCGGCGTCCATTTGTTTATATTCGTTTGTGAGTTTCAT
GATCATCTCGAGCCTGCATCAACCACCACACCCACAGAATCACCCTCCCG
TGTAAGACCTGTCAACGCTGAGACTTCCGATCATACTATAAATAGTGTCA
AGAGTACCGCTCGCTTAGCGAGGTATCAAGGATTGTCTTGAGCTAGGGCT
ACGACTGGAGGCTGTTGTCTTGTGTGTTGAAAAATTGGGGTTTCTGGTAA
ATCACCTACCAGTACAGGAAGCAGATAGCTTTGAAGATTACCGACTGAAT
ACAAAGCGTCACCTACTTAAGGAGAGCAGGAAAGACAACAACTATCGAGA
GAGTGCTAGGGAGAGTGCGAGCATCAGCGCCAGTGCCAAGAGGGACGCCA
ACCAAGAGGATGCGAGTTGTAAACACTGCGTTCTAATATGGCGATAACCT
TGGCGAAAATTAATTTCACCGAGCACGACGTAATTGCGATGCATGCAGAG
TTGGCTGCAACTCGTGAGCACGTGCACAAGCTTATTCAGGTTAGGGAAAT
TGCCGCATCACACAACTTGGACTAAATGCACCATTTCCGACTGTTAGAAA
GGCTTACAGCCTGAAGGAGAAACAATGGTTTCGATAGGAGTGAGGTACTG
ACTGAGAGGCAGCGCAAGATTCAGGGGCGAGTGTATTCGGTCGATGATCC
CAAACACTGCGTAATCGAAGTAGATTTTGACCCTCTTCTCAAAAATGTAC
TAGAAGTATGTCGGCGGAGATGAACCGGCTAAGGCAGGGAGTCTTGCCGC
CACACTTGCCGCCGGCGTACGATTTTCCCCCGTGATGATCGTCTGCATGA
TCACCATCACATCAGCCGTATTATGTTCCCAGGGGAAACTAGGCATGGGC
ACGGAGGAGCCTGAAGGAGATTGCCAGGACAAGTAAGGGAAATTCCGCTC
ACACAAGCGT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig8256:2678..6837-

>mRNA_A-nodosum_M_contig8256.3.1 ID=mRNA_A-nodosum_M_contig8256.3.1|Name=mRNA_A-nodosum_M_contig8256.3.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=171bp|location=Sequence derived from alignment at A-nodosum_M_contig8256:2678..6837- (Ascophyllum nodosum dioecious)
ATGTTGACGAACTTCTACAAGTCTCGTCTCGGCGCTTTGGTTCACGGCAG
ACGCTGGATCTCGATCATCTGGAAAAGCGCTGCGGTTACGGTGGAAGTAG
CCGTATTATGTTCCCAGGGGAAACTAGGCATGGGCACGGAGGAGCCTGAA
GGAGATTGCCAGGACAAGTAA
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