mRNA_A-nodosum_M_contig823.55.1 (mRNA) Ascophyllum nodosum dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_A-nodosum_M_contig823.55.1
Unique NamemRNA_A-nodosum_M_contig823.55.1
TypemRNA
OrganismAscophyllum nodosum dioecious (Ascophyllum nodosum dioecious (Feamainn bhuX, rockweed, Norwegian kelp, knotted kelp, knotted wrack or egg wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_A-nodosum_M_contig823.55.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A-nodosum_M_contig823contigA-nodosum_M_contig823:305706..308348 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ascophyllum nodosum dioecious OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size186
Hectar predicted targeting categoryother localisation
Exons2
Cds size180
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870152.1142478-UTR-A-nodosum_M_contig823:305705..3057111680870152.1142478-UTR-A-nodosum_M_contig823:305705..305711Ascophyllum nodosum dioeciousUTRA-nodosum_M_contig823 305706..305711 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680870152.1259837-CDS-A-nodosum_M_contig823:305711..3057401680870152.1259837-CDS-A-nodosum_M_contig823:305711..305740Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig823 305712..305740 +
1680870152.139224-CDS-A-nodosum_M_contig823:308197..3083481680870152.139224-CDS-A-nodosum_M_contig823:308197..308348Ascophyllum nodosum dioeciousCDSA-nodosum_M_contig823 308198..308348 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_A-nodosum_M_contig823.55.1prot_A-nodosum_M_contig823.55.1Ascophyllum nodosum dioeciouspolypeptideA-nodosum_M_contig823 305712..308348 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_A-nodosum_M_contig823.55.1

>prot_A-nodosum_M_contig823.55.1 ID=prot_A-nodosum_M_contig823.55.1|Name=mRNA_A-nodosum_M_contig823.55.1|organism=Ascophyllum nodosum dioecious|type=polypeptide|length=60bp
MQGRGVLDSWLHLKNQPYTDDEDKHPLPEASHLSVPRNQELCEETNDSKA
DRSGRRGGKS
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mRNA from alignment at A-nodosum_M_contig823:305706..308348+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_A-nodosum_M_contig823.55.1 ID=mRNA_A-nodosum_M_contig823.55.1|Name=mRNA_A-nodosum_M_contig823.55.1|organism=Ascophyllum nodosum dioecious|type=mRNA|length=2643bp|location=Sequence derived from alignment at A-nodosum_M_contig823:305706..308348+ (Ascophyllum nodosum dioecious)
TCGATTATGCAGGGCCGAGGAGTATTGGACTCGTGGTGATTAAGTTTCCC
CTTGTGTCGAGCAGCGGTTCAAGAGTGTAAGCTTACAGCTTAGTACTTGT
TAAATCATCCCGTCTTGTGACAGGTTATGTAACGGTACATTGGAGTACAG
TAGTAGAACCGTTACATGTACCGGGGAGTTGTCAGCATTGATACGTGTTA
TTCCCCGGGGGAAGAGGCTTAATACCCCCCGTCTAGATTATCATATCAGT
ACGGTACACTCTGGTTCAGTTGTCCAAGGTTCTCCAAGGTTGTCCATTAA
ACCACTGTTGTATTTGTACCTCGTCTCTGTACGGTACTTAGTACCCTAGA
CTATGTATTGGACGCTCACAATGAATAATATATAAAATACGTCTGCCTCT
ACACTTCCGGCCCCTAAATCGCCCCAACATGAAGCACTCCCACACCCGAC
CGTCTTAAAGCTCTGGCCCAACCGAACCCGGCTTGAGGTCAACTGAACAC
GCTAAGCGTGAGGAATCCTTGCACTGGGCTTAAGGACTTCGGGATGTACG
GGTGTACGAGGGAACTTGAAGACAGCGTCACCACAACACAGCACCGCACG
AACAGCCCAGGGGCCTTGAAAATAAAAGCAGGTGTAAAAACTCGTGAGCA
CGATTCTCGCCGCGAGCACCGCATGTCAAGAGAGCCGCCTGGGTACTTTT
TCGGGATGAGGGTATTATTCCCCGAATGCTCGTGCGGATGGCCTTCCTTG
GAACGACGTGCTGTCCATTTTGACTTCTCCTATGGGGCTGCATCTACAGG
GATGAGCTGGAATTTCTGTTTCTGAGGACAAGACTGTATACTGTACGAAG
CTACTACTGGAGCGAGCAGAACGAGACGGAGAAACCATCCGATGAGCCGC
CCACCGATCGAGAGCACAGGCCTGGAGCTCGAGCTGACCAAGCGAACCGA
TCGCGAGGAGCACCATCTTCTACGGCTGGCCTTTCGTTGGTGATCACTTT
TCGGTTCTGTTGTATGTTTTTATAATAGCTCTAATATTCTAAGTAGTACG
GAGTATTTTCTTCTTATAACAGTAGTGATTTGAACTGTCGTAAGACAGCA
GCCTGCTGATTGTACTGAAATGCACTGTGTTGAAAAATTACTTGCTCAAG
CGACGTTTGTTTGTAAGCAAGTATACGCTTATCAATTCAGAATTTCCGAT
TTCTATCATGATGACCAGTAATAAACGAATGGTAACTCAATCAAGTAAGC
CGTTAAAGAAACCCTTAACTTTGCTTTCATCTGTTTGTAGGCAGATCGTT
TCCGCTGAACTCAACGCTTGATAGCATCGTTGGAGTAGCAGAGCCTAGTT
GGCTGCGGGCGTAAAAGCATTGATTGGTAATAAGAGGTGACAACGATCGT
TGCTTGATTCGAAAAGGTAGCTAATACCGTGTCACGACCACCGCTGTCGT
GATTCGACTGGTTCCAAAATACACAACGGAAAAATCGTTAACGTCGCGTA
TCATCTATAAAGCAGTAATGAAGTGAATTTTCCATAGTGGCAATTGTTCG
TTTTTGGGAAAAAGAAGGATAGATTAAGTCATCATCGCATGCAGAACTGA
ATGGAATTTATAGAACGATAAAATAACTAGTTGAGCCTTTAAGAGCACTG
TGCCGAATGATCTTCTTTCTCTTCTACAACATCCGTGAGGAAGGAAAAAT
TCCCTCGGTTGAAGGATGTGTGATTGAAGTTGCTAGAGAGATGCCGGTCA
TGGTCTGGAGTGAAACAGGTAGTGCTCCCACCATCGAACTGGATCTGTCG
CGACGAAGAGGGGAAATAGGTATGCCCTCGATATCTCCTCAAAAAGAAGA
TGAATAATTAGATATGGAAATGAATGTTTTAAGATCGAAGCCATGCTTTC
TATTTGACTCTACTAGCAGTTTTTGACCTCTGTAATTCCGTTTGATCGCG
ATACCTTGATAACTGAACCACCTTTTGGTCCCAATTTCTGACAATGCATG
ATGAATTGCTCTGATGTGCAACTTCGATTAAGTCAGAATAATATTGCCTG
CATTAGTTTGAAATGTCGACATTGAGTCAGATATCAGCAGCCGGTGTTGG
TAGGACGATATGATAAAAATTTCATGTGTTTGCAAGAGTTGTTGGGACGG
TGTTTTCCAAACAGTTTGCAATACTTTGATCAAGATATGGGATTTTATGC
GTATGTACGTATCACTAAAGCCCAAAGTGGTGATCATTACTTGATCGTTG
TAGTACTGGCAATCATACGCGATGGATGCTCGGCCCCTAAATCTGCCCCA
ACATGAAGCAAAGCGATTAGGTCAACTAGATAACATTGGTATAATGCCTC
TACATACATCTACTAAAATTACAAAACCTTTTGGTCGTTCTTTACCCTAC
TGCTAGACTCTATTCTGACGGTTCTATATCCTGATGGAGTGTGATCCTTT
AATTTCATTCAACATCGACGTATTGTGACTATTCAATCACAGGCTGCATT
TAAAGAATCAGCCATACACCGACGACGAAGACAAGCATCCACTACCTGAA
GCATCACACCTTAGCGTTCCCAGAAACCAGGAGCTATGCGAGGAAACTAA
CGATTCTAAGGCTGATAGGAGCGGACGAAGGGGTGGAAAGTCT
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Coding sequence (CDS) from alignment at A-nodosum_M_contig823:305706..308348+

>mRNA_A-nodosum_M_contig823.55.1 ID=mRNA_A-nodosum_M_contig823.55.1|Name=mRNA_A-nodosum_M_contig823.55.1|organism=Ascophyllum nodosum dioecious|type=CDS|length=180bp|location=Sequence derived from alignment at A-nodosum_M_contig823:305706..308348+ (Ascophyllum nodosum dioecious)
ATGCAGGGCCGAGGAGTATTGGACTCGTGGCTGCATTTAAAGAATCAGCC
ATACACCGACGACGAAGACAAGCATCCACTACCTGAAGCATCACACCTTA
GCGTTCCCAGAAACCAGGAGCTATGCGAGGAAACTAACGATTCTAAGGCT
GATAGGAGCGGACGAAGGGGTGGAAAGTCT
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